Variant report

Variant	nsv1029047
Chromosome Location	chr8:5950611-5966081
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANGPT2-3	chr8:5957850-5957973	ENSG00000253880

Extended variants
information (count: 566 )
Associated
traits (count: 120 )

Variant overlapped rSNPs/rCNVs (count:566 , 50 per page) page: 1 2 3 4 5 6 7 ... 12

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs141277132	chr8:5952602-5952603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs575480630	chr8:5952609-5952610	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs10503353	chr8:5952616-5952617	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs561460142	chr8:5952621-5952622	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs528848793	chr8:5952625-5952626	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs548727960	chr8:5952658-5952659	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188845474	chr8:5952662-5952663	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs528207696	chr8:5952667-5952668	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs551544963	chr8:5952669-5952670	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs146928331	chr8:5952707-5952708	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs181690742	chr8:5952722-5952723	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs550815056	chr8:5952730-5952731	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs560926676	chr8:5952732-5952733	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs574379641	chr8:5952737-5952738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs536600625	chr8:5952764-5952765	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs373560319	chr8:5952770-5952771	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs553101318	chr8:5952772-5952773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs149272646	chr8:5952776-5952777	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs17076021	chr8:5952805-5952806	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs137940899	chr8:5952809-5952810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs577751225	chr8:5952823-5952824	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs13268498	chr8:5952834-5952835	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs76271383	chr8:5952860-5952861	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs555217923	chr8:5952864-5952865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs62494445	chr8:5952885-5952886	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs542572066	chr8:5952889-5952890	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs559078959	chr8:5952908-5952909	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs528118154	chr8:5952914-5952915	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs111933595	chr8:5952941-5952942	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs10503354	chr8:5952944-5952945	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
31	rs546029541	chr8:5952947-5952948	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs550504278	chr8:5952991-5952992	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs141563397	chr8:5953006-5953007	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs529937368	chr8:5953015-5953016	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs527770010	chr8:5953023-5953024	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs547602091	chr8:5953037-5953038	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs375184538	chr8:5953039-5953040	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs558237258	chr8:5953042-5953043	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs536217261	chr8:5953056-5953057	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs190213997	chr8:5953094-5953095	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs558593813	chr8:5953123-5953124	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs182417932	chr8:5953133-5953134	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs547490326	chr8:5953147-5953148	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs185854081	chr8:5953167-5953168	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs76175337	chr8:5953231-5953232	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs377682101	chr8:5953234-5953235	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs575020851	chr8:5953238-5953239	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs540545707	chr8:5953241-5953242	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs554536750	chr8:5953244-5953245	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs572840327	chr8:5953248-5953249	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:120)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
abnormal development	18461090	CNVD
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Epilepsy	22083797	CNVD
Acute myeloid leukemia	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Cancer	20164920	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Non-small cell lung cancer	21829676	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Prostate cancer	17217626	CNVD
Developmental delay	19128483	CNVD
Neuroticism	17667963	CNVD
Leukoplakia	24403051	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Urothelial carcinoma	21177765	CNVD
Lung cancer	18438408	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16774939	CNVD
Breast cancer	21364760	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Cancer	20164919	CNVD
Medulloblastoma	16783165	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Melanoma	20688739	CNVD

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:5952600-5953000	Enhancers	Fetal Brain Female	brain
2	chr8:5952800-5954400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:5953000-5954000	Weak transcription	Fetal Brain Female	brain
4	chr8:5953400-5954200	Enhancers	Brain Substantia Nigra	brain
5	chr8:5953600-5954000	Enhancers	Brain Cingulate Gyrus	brain
6	chr8:5954000-5954200	Enhancers	Fetal Brain Male	brain
7	chr8:5954200-5954400	Enhancers	Fetal Brain Female	brain
8	chr8:5954200-5955400	Weak transcription	Fetal Brain Male	brain
9	chr8:5962200-5979000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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