Variant report

Variant	nsv1029357
Chromosome Location	chr6:26432815-26464789
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:715)
CpG islands
(count:1099)
Chromatin interactive
region (count:39)
LncRNA
region (count:14)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

(count:715 , 50 per page) page: 1 2 3 4 5 6 7 ... 15

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:26440731-26440735	K562	blood:	n/a	n/a
2	ARID3A	chr6:26440421-26441008	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:26457836-26458207	HepG2	liver:	n/a	n/a
4	ATF1	chr6:26457908-26458286	K562	blood:	n/a	n/a
5	ATF1	chr6:26440527-26440834	K562	blood:	n/a	n/a
6	ATF2	chr6:26446081-26446917	GM12878	blood:	n/a	n/a
7	ATF2	chr6:26446043-26446908	GM12878	blood:	n/a	n/a
8	BATF	chr6:26446083-26446930	GM12878	blood:	n/a	n/a
9	BATF	chr6:26446580-26446863	GM12878	blood:	n/a	n/a
10	BATF	chr6:26446214-26446536	GM12878	blood:	n/a	n/a
11	BCL11A	chr6:26446136-26446582	GM12878	blood:	n/a	n/a
12	BCL11A	chr6:26446237-26446481	GM12878	blood:	n/a	n/a
13	BCL3	chr6:26446139-26446570	GM12878	blood:	n/a	n/a
14	BCLAF1	chr6:26446005-26446607	GM12878	blood:	n/a	n/a
15	BHLHE40	chr6:26440473-26441150	GM12878	blood:	n/a	n/a
16	BHLHE40	chr6:26446145-26446565	GM12878	blood:	n/a	n/a
17	BHLHE40	chr6:26457962-26458226	HepG2	liver:	n/a	n/a
18	BHLHE40	chr6:26458552-26458563	K562	blood:	n/a	n/a
19	BHLHE40	chr6:26440568-26440767	K562	blood:	n/a	n/a
20	BHLHE40	chr6:26457940-26458334	K562	blood:	n/a	n/a
21	BHLHE40	chr6:26457911-26458325	GM12878	blood:	n/a	n/a
22	BRCA1	chr6:26457937-26458234	Hela-S3	cervix:	n/a	n/a
23	BRCA1	chr6:26440558-26440819	Hela-S3	cervix:	n/a	n/a
24	BRCA1	chr6:26458311-26458434	HepG2	liver:	n/a	n/a
25	CBX3	chr6:26433966-26434229	K562	blood:	n/a	n/a
26	CBX3	chr6:26433888-26434282	K562	blood:	n/a	n/a
27	CBX3	chr6:26457315-26458711	K562	blood:	n/a	n/a
28	CCNT2	chr6:26458339-26458524	K562	blood:	n/a	n/a
29	CCNT2	chr6:26438012-26438147	K562	blood:	n/a	n/a
30	CEBPB	chr6:26459312-26459525	HepG2	liver:	n/a	chr6:26459425-26459438 chr6:26459426-26459437
31	CEBPB	chr6:26440119-26441091	GM12878	blood:	n/a	chr6:26440696-26440704
32	CEBPB	chr6:26440442-26440755	Hela-S3	cervix:	n/a	chr6:26440696-26440704
33	CEBPB	chr6:26438406-26438484	IMR90	lung:	n/a	chr6:26438430-26438441
34	CEBPB	chr6:26438275-26438595	K562	blood:	n/a	chr6:26438430-26438441
35	CEBPB	chr6:26437424-26437559	K562	blood:	n/a	chr6:26437482-26437493 chr6:26437481-26437492 chr6:26437483-26437492
36	CEBPB	chr6:26438295-26438597	HepG2	liver:	n/a	chr6:26438430-26438441
37	CEBPB	chr6:26433012-26433365	HepG2	liver:	n/a	n/a
38	CEBPB	chr6:26437378-26437610	A549	lung:	n/a	chr6:26437482-26437493 chr6:26437481-26437492 chr6:26437483-26437492
39	CEBPB	chr6:26459435-26459456	K562	blood:	n/a	n/a
40	CEBPB	chr6:26446124-26446753	GM12878	blood:	n/a	n/a
41	CEBPB	chr6:26432745-26433059	Hela-S3	cervix:	n/a	n/a
42	CEBPB	chr6:26433120-26433394	IMR90	lung:	n/a	n/a
43	CEBPB	chr6:26438125-26438588	K562	blood:	n/a	chr6:26438430-26438441
44	CEBPB	chr6:26440441-26440608	HepG2	liver:	n/a	n/a
45	CEBPB	chr6:26459274-26459575	IMR90	lung:	n/a	chr6:26459425-26459438 chr6:26459426-26459437
46	CEBPB	chr6:26437331-26437604	HepG2	liver:	n/a	chr6:26437482-26437493 chr6:26437481-26437492 chr6:26437483-26437492
47	CHD1	chr6:26446192-26446347	GM12878	blood:	n/a	n/a
48	CHD1	chr6:26458251-26458394	GM12878	blood:	n/a	n/a
49	CHD2	chr6:26457716-26457960	HepG2	liver:	n/a	n/a
50	CHD2	chr6:26458294-26458429	HepG2	liver:	n/a	n/a

(count:1099 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26459986-26460036	HRCEpiC	kidney:	n/a
2	chr6:26459986-26460036	HRCEpiC	kidney:	n/a
3	chr6:26457928-26457978	Jurkat	blood:	n/a
4	chr6:26457353-26457403	HepG2	liver:	n/a
5	chr6:26440101-26440151	LNCaP	prostate:	n/a
6	chr6:26456230-26456280	AG09319	gingival:	n/a
7	chr6:26442290-26442340	SKMC	muscle:	n/a
8	chr6:26456230-26456280	HCM	heart:	n/a
9	chr6:26458213-26458263	BJ	skin:	n/a
10	chr6:26442290-26442340	HCPEpiC	choroid plexus:	n/a
11	chr6:26458013-26458063	SAEC	small airway:	n/a
12	chr6:26457928-26457978	U87	brain:	n/a
13	chr6:26457353-26457403	K562	blood:	n/a
14	chr6:26457928-26457978	HCM	heart:	n/a
15	chr6:26457984-26458034	GM06990	blood:	n/a
16	chr6:26458213-26458263	ProgFib	skin:	n/a
17	chr6:26440610-26440660	AG09309	skin:	n/a
18	chr6:26457928-26457978	HAEpiC	amniotic membrane:	n/a
19	chr6:26456230-26456280	NH-A	brain:	n/a
20	chr6:26457353-26457403	LNCaP	prostate:	n/a
21	chr6:26452680-26452730	NH-A	brain:	n/a
22	chr6:26440610-26440660	HRPEpiC	eye:	n/a
23	chr6:26440101-26440151	AG10803	skin:	n/a
24	chr6:26442290-26442340	BE2_C	brain:	n/a
25	chr6:26457984-26458034	NH-A	brain:	n/a
26	chr6:26457353-26457403	ProgFib	skin:	n/a
27	chr6:26458326-26458376	RPTEC	kidney:	n/a
28	chr6:26458489-26458539	HMEC	breast:	n/a
29	chr6:26452680-26452730	GM19239	blood:	n/a
30	chr6:26440101-26440151	NT2-D1	testis:	n/a
31	chr6:26456230-26456280	AG04449	skin:	fetal
32	chr6:26456230-26456280	AG04450	lung:	fetal
33	chr6:26459986-26460036	SK-N-SH_RA	brain:	n/a
34	chr6:26457984-26458034	SAEC	small airway:	n/a
35	chr6:26452680-26452730	Hela-S3	cervix:	n/a
36	chr6:26440101-26440151	NHDF-neo	bronchial:	n/a
37	chr6:26440340-26440390	SK-N-SH_RA	brain:	n/a
38	chr6:26458326-26458376	HEK293	kidney:	embryo
39	chr6:26458013-26458063	K562	blood:	n/a
40	chr6:26458189-26458239	HCF	heart:	n/a
41	chr6:26440610-26440660	A549	lung:	n/a
42	chr6:26457928-26457978	SK-N-SH	brain:	n/a
43	chr6:26457353-26457403	GM06990	blood:	n/a
44	chr6:26442290-26442340	HEK293	kidney:	embryo
45	chr6:26440101-26440151	HRE	kidney:	n/a
46	chr6:26442290-26442340	A549	lung:	n/a
47	chr6:26458213-26458263	HCF	heart:	n/a
48	chr6:26458189-26458239	PrEC	prostate:	n/a
49	chr6:26458093-26458143	HPAEpiC	pulmonary alveolar:	n/a
50	chr6:26458093-26458143	Caco-2	colon:	n/a

(count:39 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26436944..26439158-chr6:26458061..26459676,2	MCF-7	breast:
2	chr6:26204630..26206245-chr6:26437360..26439322,2	K562	blood:
3	chr6:26462941..26465022-chr6:26475685..26477185,2	K562	blood:
4	chr6:26429586..26431412-chr6:26436567..26439801,3	K562	blood:
5	chr6:26435741..26437513-chr6:26437862..26439731,2	MCF-7	breast:
6	chr6:26457960..26461047-chr6:26519488..26522400,3	MCF-7	breast:
7	chr11:62609075..62609632-chr6:26457866..26458649,2	NB4	blood:
8	chr6:26202174..26206210-chr6:26451824..26455536,3	K562	blood:
9	chr6:26408794..26411203-chr6:26449353..26451664,2	K562	blood:
10	chr6:26449553..26453974-chr6:26454911..26459271,5	K562	blood:
11	chr6:26410362..26412070-chr6:26433170..26434704,2	K562	blood:
12	chr6:26170156..26172522-chr6:26452443..26454404,2	K562	blood:
13	chr6:26432568..26435135-chr6:26469851..26472610,2	K562	blood:
14	chr6:26445132..26448422-chr6:26449156..26450907,3	MCF-7	breast:
15	chr6:26441674..26444658-chr6:26456493..26459926,5	K562	blood:
16	chr6:26419994..26421593-chr6:26434253..26437135,2	K562	blood:
17	chr6:26203411..26206130-chr6:26436411..26439322,2	K562	blood:
18	chr6:26435741..26437513-chr6:26437862..26439731,2	MCF-7	breast:
19	chr6:26445132..26448422-chr6:26449156..26450907,3	MCF-7	breast:
20	chr6:26421705..26424532-chr6:26436910..26439772,3	MCF-7	breast:
21	chr6:26158231..26160273-chr6:26456660..26458707,2	K562	blood:
22	chr6:26447799..26450389-chr6:26451131..26452755,2	K562	blood:
23	chr6:26420361..26423136-chr6:26455979..26458036,3	MCF-7	breast:
24	chr6:26194454..26196635-chr6:26433638..26435615,2	K562	blood:
25	chr6:26440449..26443327-chr6:26444566..26448075,3	K562	blood:
26	chr6:26449858..26453821-chr6:26456459..26459528,5	K562	blood:
27	chr6:26456959..26459749-chr6:26461329..26463001,2	MCF-7	breast:
28	chr6:26158283..26160740-chr6:26434619..26436280,2	K562	blood:
29	chr6:26433270..26434795-chr6:26457086..26458602,2	MCF-7	breast:
30	chr6:26431968..26434782-chr6:26519398..26522131,2	MCF-7	breast:
31	chr6:26341644..26342483-chr6:26450003..26451206,4	MCF-7	breast:
32	chr6:26436348..26437965-chr6:26445260..26447291,2	K562	blood:
33	chr6:26284595..26286782-chr6:26439423..26441341,2	K562	blood:
34	chr6:26365087..26367638-chr6:26438423..26440461,2	K562	blood:
35	chr6:26449553..26453974-chr6:26454911..26459271,5	K562	blood:
36	chr6:26204619..26206615-chr6:26455801..26457917,2	K562	blood:
37	chr6:26440449..26443327-chr6:26444566..26448075,3	K562	blood:
38	chr6:26419843..26421610-chr6:26453709..26456222,2	K562	blood:
39	chr6:26382632..26385246-chr6:26444412..26446084,2	K562	blood:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BTN3A3-1	chr6:26447901-26448486	l_3143_chr6:26439933-26448332_testes
2	lnc-BTN2A1-2	chr6:26449465-26449916	NONHSAT108282
3	lnc-HIST1H4H-4	chr6:26439052-26439291	l_3142_chr6:26432914-26440114_testes
4	lnc-BTN3A3-1	chr6:26439934-26440114	l_3143_chr6:26439933-26448332_testes
5	lnc-BTN2A1-3	chr6:26443798-26444167	NONHSAT108280
6	lnc-BTN3A3-1	chr6:26442281-26442343	l_3143_chr6:26439933-26448332_testes
7	lnc-BTN2A1-3	chr6:26440738-26440876	NONHSAT108281
8	lnc-BTN2A1-3	chr6:26443610-26443670	NONHSAT108280
9	lnc-BTN2A1-3	chr6:26443610-26444032	NONHSAT108281
10	lnc-HIST1H4H-4	chr6:26437217-26437294	l_3142_chr6:26432914-26440114_testes
11	lnc-HIST1H4H-4	chr6:26432915-26433370	l_3142_chr6:26432914-26440114_testes
12	lnc-HIST1H4H-4	chr6:26439934-26440114	l_3142_chr6:26432914-26440114_testes
13	lnc-BTN2A1-2	chr6:26450335-26450442	NONHSAT108282
14	lnc-BTN2A1-3	chr6:26440721-26440876	NONHSAT108280

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	BTN3A3	hsa-miR-186-5p	chr6:26452722-26452745

Variant related genes	Relation type
BTN2A1	TF binding region
BTN3A3	TF binding region
BTN2A1	CpG island
BTN3A3	CpG island
ENSG00000124549	chromatin interactions
ENSG00000133316	chromatin interactions
ENSG00000217275	chromatin interactions
ENSG00000112763	chromatin interactions
ENSG00000228223	chromatin interactions
ENSG00000026950	chromatin interactions
ENSG00000198518	chromatin interactions
ENSG00000215979	chromatin interactions
ENSG00000199289	chromatin interactions
ENSG00000216331	chromatin interactions
ENSG00000111801	chromatin interactions
ENSG00000124508	chromatin interactions
ENSG00000158406	chromatin interactions
ENSG00000158373	chromatin interactions
ENSG00000186470	chromatin interactions

Extended variants
information (count: 1290 )
Associated
traits (count: 103 )

Variant overlapped rSNPs/rCNVs (count:1290 , 50 per page) page: 1 2 3 4 5 6 7 ... 26

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs576470783	chr6:26432886-26432887	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs191320155	chr6:26432895-26432896	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs181294241	chr6:26432896-26432897	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs79824354	chr6:26432897-26432898	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs184924491	chr6:26432915-26432916	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
6	rs541622882	chr6:26432996-26432997	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
7	rs564799604	chr6:26433017-26433018	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
8	rs533656254	chr6:26433041-26433042	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
9	rs559699168	chr6:26433074-26433075	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
10	rs150816658	chr6:26433086-26433087	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
11	rs7769859	chr6:26433088-26433089	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
12	rs537409870	chr6:26433096-26433097	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
13	rs549222670	chr6:26433100-26433101	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
14	rs112691287	chr6:26433101-26433102	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
15	rs111753870	chr6:26433139-26433140	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
16	rs547184078	chr6:26433180-26433181	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
17	rs570455767	chr6:26433255-26433256	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
18	rs539363925	chr6:26433258-26433259	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	Overlapped CNVs	n/a
19	rs7770339	chr6:26433290-26433291	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs575972753	chr6:26433295-26433296	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
21	rs548166091	chr6:26433317-26433318	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
22	rs145314010	chr6:26433318-26433319	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
23	rs189682277	chr6:26433322-26433323	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
24	rs572151175	chr6:26433326-26433327	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
25	rs1624440	chr6:26433329-26433330	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
26	rs376802625	chr6:26433336-26433337	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	Overlapped CNVs	n/a
27	rs147634839	chr6:26433491-26433492	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs112081767	chr6:26433505-26433506	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs554147440	chr6:26433546-26433547	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs549143797	chr6:26433573-26433574	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs7770699	chr6:26433601-26433602	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs563973292	chr6:26433605-26433606	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs531432023	chr6:26433637-26433638	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs529304924	chr6:26433745-26433746	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs542588611	chr6:26433826-26433827	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs372972982	chr6:26433841-26433842	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs187680829	chr6:26433862-26433863	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs75457218	chr6:26433939-26433940	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	mRNA abundance
39	rs551422221	chr6:26433944-26433945	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs570317619	chr6:26434048-26434049	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs192013212	chr6:26434049-26434050	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs375128103	chr6:26434072-26434073	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs549825733	chr6:26434074-26434075	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs570920714	chr6:26434125-26434126	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs112394255	chr6:26434133-26434134	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs2393655	chr6:26434139-26434140	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
47	rs183555190	chr6:26434193-26434194	Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs2393656	chr6:26434236-26434237	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
49	rs534708851	chr6:26434284-26434285	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs557855300	chr6:26434301-26434302	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:103)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
Lung cancer	18438408	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
Autism	21448237	CNVD
Cancer	20164919	CNVD
Melanoma	18172304	CNVD
Breast cancer	22844521	CNVD
HIV/AIDS	22844521	CNVD
Ovarian cancer	22844521	CNVD
Prostate cancer	22844521	CNVD
Psoriasis	22844521	CNVD
Rheumatoid arthritis	22844521	CNVD
Sclerosis systemic	22844521	CNVD
Systemic lupus erythematosus	22844521	CNVD
Breast cancer	22522925	CNVD
Breast cancer	21552322	CNVD
Immune disease	21076436	CNVD
Autoimmune disease	19135723	CNVD
Systemic lupus erythematosus	17953491	CNVD
Recurrent Infections	22737222	CNVD
Systemic lupus erythematosus	21904924	CNVD
Ependymoma	19289631	CNVD
Gestational infection	22844521	CNVD
Head circumference	22844521	CNVD
Infertility	22844521	CNVD
Recurrent birth weight diabetes	22844521	CNVD
Obesity	22844521	CNVD
Recurrent pregnancy loss	22844521	CNVD
Intellectual disability	21811512	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Nasopharyngeal cancer	22815911	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	21115979	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Breast cancer	17133270	CNVD
Autism	22495311	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	16790693	CNVD
Breast cancer	22032731	CNVD
Cervical cancer	21062161	CNVD
Breast cancer	21785460	CNVD
Retinoblastoma	16790693	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Systemic lupus erythematosus	17503323	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
T-cell lymphomas	19863542	CNVD
Urothelial carcinoma	18382360	CNVD
Cancer	21183584	CNVD
small cell lung cancer	20016488	CNVD
Williams-beuren syndrome	16971481	CNVD
Renal cell carcinoma	18765545	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	21569311	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	16397240	CNVD
Metanephric adenoma	20802469	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1932 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26422200-26439800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:26422400-26439400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:26422400-26439400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:26422400-26439600	Weak transcription	Thymus	Thymus
5	chr6:26422600-26434200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:26422600-26434400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:26422600-26434600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:26422600-26439400	Weak transcription	HMEC	breast
9	chr6:26422600-26439600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr6:26422600-26439800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:26422600-26440000	Weak transcription	Psoas Muscle	Psoas
12	chr6:26423000-26433200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:26423200-26440000	Weak transcription	Colonic Mucosa	Colon
14	chr6:26423600-26439400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:26423600-26440400	Weak transcription	Right Ventricle	heart
16	chr6:26423800-26439600	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:26423800-26439800	Weak transcription	Hela-S3	cervix
18	chr6:26424800-26433400	Weak transcription	Esophagus	oesophagus
19	chr6:26425000-26433400	Strong transcription	Fetal Muscle Leg	muscle
20	chr6:26425600-26433400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:26425800-26433400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:26425800-26439600	Weak transcription	Small Intestine	intestine
23	chr6:26426200-26433400	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:26427600-26433000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:26428200-26436000	Weak transcription	K562	blood
26	chr6:26429200-26439800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:26429800-26433000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:26430000-26439400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:26430000-26439400	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:26430000-26439800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:26430200-26439400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr6:26430600-26434400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr6:26431000-26433000	Strong transcription	Dnd41	blood
34	chr6:26431000-26434400	Weak transcription	Placenta	Placenta
35	chr6:26431400-26433000	Genic enhancers	NHDF-Ad	bronchial
36	chr6:26431400-26433400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr6:26431400-26433600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:26431600-26433200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:26431600-26433400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:26431800-26433600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:26431800-26438600	Weak transcription	NHEK	skin
42	chr6:26432000-26433000	Enhancers	Osteobl	bone
43	chr6:26432000-26433200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:26432000-26433400	Enhancers	Muscle Satellite Cultured Cells	--
45	chr6:26432000-26439400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:26432000-26439600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr6:26432000-26440000	Weak transcription	A549	lung
48	chr6:26432200-26433000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:26432200-26433000	Weak transcription	Adipose Nuclei	Adipose
50	chr6:26432200-26433000	Weak transcription	Aorta	Aorta

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