Variant report

Variant	nsv1029668
Chromosome Location	chr9:26486471-26531692
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 798 )
Associated
traits (count: 117 )

Variant overlapped rSNPs/rCNVs (count:798 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577255551	chr9:26491621-26491622	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs181345077	chr9:26491665-26491666	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs541423292	chr9:26491666-26491667	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs116762352	chr9:26491674-26491675	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs112531317	chr9:26491697-26491698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs547537370	chr9:26491703-26491704	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs565927825	chr9:26491706-26491707	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs533687689	chr9:26491714-26491715	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs147417765	chr9:26491725-26491726	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs139669821	chr9:26491748-26491749	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs576785859	chr9:26491779-26491780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs537815009	chr9:26491808-26491809	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs556507920	chr9:26491815-26491816	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs149999702	chr9:26491846-26491847	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs144294397	chr9:26491854-26491855	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs559734556	chr9:26491855-26491856	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs560427416	chr9:26491858-26491859	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs75520732	chr9:26491866-26491867	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs114516429	chr9:26491876-26491877	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs185088791	chr9:26491939-26491940	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs201290737	chr9:26491942-26491943	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs531623788	chr9:26491959-26491960	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs542911023	chr9:26491981-26491982	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs148709978	chr9:26491997-26491998	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs561154432	chr9:26492005-26492006	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs369837549	chr9:26492017-26492018	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs142288273	chr9:26492020-26492021	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs547669554	chr9:26492048-26492049	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs549708785	chr9:26492049-26492050	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs190013309	chr9:26492050-26492051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs372248924	chr9:26492060-26492061	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs533542589	chr9:26492066-26492067	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs370605006	chr9:26492097-26492098	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs115421582	chr9:26492101-26492102	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs556242922	chr9:26492102-26492103	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs146873844	chr9:26492103-26492104	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs7038517	chr9:26492106-26492107	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs372761190	chr9:26492107-26492108	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs554084752	chr9:26492108-26492109	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs572166529	chr9:26492152-26492153	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs545948175	chr9:26492168-26492169	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs557978458	chr9:26492189-26492190	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs576434172	chr9:26492190-26492191	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs543505847	chr9:26492194-26492195	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs140744305	chr9:26492203-26492204	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs7038758	chr9:26492211-26492212	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs12553602	chr9:26492216-26492217	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs559584358	chr9:26492219-26492220	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs533373966	chr9:26492226-26492227	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs62544111	chr9:26492229-26492230	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:117)

Disease	PMID	Source
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Hodgkin''s lymphoma	18179710	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Pancreatic cancer	21811587	CNVD
Barrett''s syndrome	19417022	CNVD
Myelofibrosis	22110671	CNVD
Urothelial cell carcinoma	18451213	CNVD
polycythaemia	22829968	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	21525872	CNVD
Renal cell carcinoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26491600-26493200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:26502000-26502600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:26502200-26502400	Enhancers	Fetal Muscle Leg	muscle
4	chr9:26502400-26505600	Weak transcription	Fetal Muscle Leg	muscle
5	chr9:26504000-26504400	Enhancers	Fetal Lung	lung
6	chr9:26505600-26506000	Enhancers	Fetal Muscle Leg	muscle
7	chr9:26510800-26511000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:26511200-26511400	Enhancers	Fetal Kidney	kidney
9	chr9:26511400-26512400	Weak transcription	Fetal Kidney	kidney
10	chr9:26512400-26512600	Enhancers	Fetal Kidney	kidney
11	chr9:26516600-26517400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:26516800-26517200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:26517000-26517800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:26519400-26519600	Enhancers	Lung	lung
15	chr9:26519600-26519800	Enhancers	Fetal Lung	lung
16	chr9:26519600-26520000	Enhancers	Fetal Stomach	stomach
17	chr9:26520000-26520400	Weak transcription	Fetal Stomach	stomach
18	chr9:26520200-26523600	Weak transcription	Fetal Lung	lung
19	chr9:26520400-26520600	Enhancers	Fetal Stomach	stomach
20	chr9:26520600-26522800	Weak transcription	Fetal Stomach	stomach
21	chr9:26522800-26526400	Enhancers	Fetal Stomach	stomach
22	chr9:26523000-26525000	Enhancers	Brain Germinal Matrix	brain
23	chr9:26523000-26525400	Enhancers	Colon Smooth Muscle	Colon
24	chr9:26523200-26524200	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:26523200-26525400	Enhancers	Rectal Smooth Muscle	rectum
26	chr9:26523600-26525400	Enhancers	Fetal Muscle Leg	muscle
27	chr9:26523600-26525800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr9:26523600-26526000	Enhancers	Fetal Lung	lung
29	chr9:26523800-26524400	Enhancers	Fetal Brain Female	brain
30	chr9:26523800-26525200	Enhancers	Fetal Kidney	kidney
31	chr9:26524000-26524400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr9:26524000-26525200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:26524200-26524600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr9:26524200-26524600	Flanking Active TSS	Stomach Smooth Muscle	stomach
35	chr9:26524200-26525600	Enhancers	Fetal Brain Male	brain
36	chr9:26524400-26524800	Weak transcription	Fetal Brain Female	brain
37	chr9:26524600-26525400	Enhancers	Stomach Smooth Muscle	stomach
38	chr9:26524800-26525000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr9:26524800-26525200	Enhancers	Fetal Brain Female	brain
40	chr9:26525600-26525800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links