Variant report
| Variant | nsv1030064 |
|---|---|
| Chromosome Location | chr9:21455760-21524674 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:783)
- CpG islands (count:0)
- Chromatin interactive region (count:8)
- LncRNA region (count:15)
- Mature miRNA region (count: 2)
- miRNA target sites (count:0)
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | ARID3A | chr9:21461370-21461829 | HepG2 | liver: | n/a | n/a |
| 2 | BCL3 | chr9:21503475-21506429 | A549 | lung: | n/a | chr9:21506204-21506213 |
| 3 | BCL3 | chr9:21508689-21509632 | A549 | lung: | n/a | n/a |
| 4 | BCL3 | chr9:21501331-21508410 | A549 | lung: | n/a | chr9:21506204-21506213 |
| 5 | BCL3 | chr9:21501977-21502583 | A549 | lung: | n/a | n/a |
| 6 | BCL3 | chr9:21519608-21520690 | A549 | lung: | n/a | chr9:21519928-21519937 |
| 7 | BCL3 | chr9:21500520-21501100 | A549 | lung: | n/a | n/a |
| 8 | BCL3 | chr9:21506616-21507704 | A549 | lung: | n/a | n/a |
| 9 | BCL3 | chr9:21498490-21499615 | A549 | lung: | n/a | n/a |
| 10 | BCL3 | chr9:21499752-21501285 | A549 | lung: | n/a | n/a |
| 11 | BCL3 | chr9:21499921-21500395 | A549 | lung: | n/a | n/a |
| 12 | CBX3 | chr9:21465829-21466378 | HCT-116 | colon: | n/a | n/a |
| 13 | CBX3 | chr9:21522147-21524471 | HCT-116 | colon: | n/a | n/a |
| 14 | CBX3 | chr9:21519763-21526025 | HCT-116 | colon: | n/a | n/a |
| 15 | CBX3 | chr9:21520811-21522028 | HCT-116 | colon: | n/a | n/a |
| 16 | CEBPB | chr9:21519556-21521968 | HCT-116 | colon: | n/a | n/a |
| 17 | CEBPB | chr9:21513524-21513835 | IMR90 | lung: | n/a | n/a |
| 18 | CEBPB | chr9:21495278-21495540 | IMR90 | lung: | n/a | n/a |
| 19 | CEBPB | chr9:21495286-21495543 | HepG2 | liver: | n/a | n/a |
| 20 | CEBPB | chr9:21495325-21495569 | A549 | lung: | n/a | n/a |
| 21 | CEBPB | chr9:21519283-21525730 | HCT-116 | colon: | n/a | n/a |
| 22 | CEBPB | chr9:21506801-21507249 | Hela-S3 | cervix: | n/a | n/a |
| 23 | CEBPB | chr9:21506792-21507249 | IMR90 | lung: | n/a | n/a |
| 24 | CEBPB | chr9:21461343-21461732 | HepG2 | liver: | n/a | chr9:21461511-21461522 |
| 25 | CEBPB | chr9:21501197-21501480 | A549 | lung: | n/a | n/a |
| 26 | CEBPB | chr9:21506492-21507694 | HCT-116 | colon: | n/a | chr9:21507245-21507257 |
| 27 | CEBPB | chr9:21493662-21493841 | A549 | lung: | n/a | n/a |
| 28 | CEBPB | chr9:21478670-21478870 | A549 | lung: | n/a | chr9:21478675-21478688 |
| 29 | CTCF | chr9:21466060-21466210 | GM12871 | blood: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 30 | CTCF | chr9:21466060-21466210 | MCF-7 | breast: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 31 | CTCF | chr9:21466040-21466190 | GM12872 | blood: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 32 | CTCF | chr9:21466040-21466190 | HRPEpiC | eye: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 33 | CTCF | chr9:21473360-21473510 | AoAF | blood vessel: | n/a | chr9:21473366-21473387 |
| 34 | CTCF | chr9:21466020-21466170 | HepG2 | liver: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 35 | CTCF | chr9:21465878-21466284 | MCF-7 | breast: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 36 | CTCF | chr9:21479260-21479410 | HMF | breast: | n/a | n/a |
| 37 | CTCF | chr9:21466020-21466170 | NB4 | blood: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 38 | CTCF | chr9:21466000-21466150 | NHEK | skin: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 39 | CTCF | chr9:21473340-21473490 | GM12865 | blood: | n/a | chr9:21473366-21473387 |
| 40 | CTCF | chr9:21491803-21492065 | T-47D | breast: | n/a | chr9:21491933-21491954 |
| 41 | CTCF | chr9:21465961-21466252 | Spleen_OC | spleen: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 42 | CTCF | chr9:21473320-21473470 | SAEC | small airway: | n/a | chr9:21473366-21473387 |
| 43 | CTCF | chr9:21491900-21492050 | HBMEC | blood vessel: | n/a | chr9:21491933-21491954 |
| 44 | CTCF | chr9:21465931-21465978 | ProgFib | skin: | n/a | n/a |
| 45 | CTCF | chr9:21466060-21466210 | HMF | breast: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 46 | CTCF | chr9:21491840-21491990 | BJ | skin: | n/a | chr9:21491933-21491954 |
| 47 | CTCF | chr9:21466040-21466190 | NHLF | lung: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 48 | CTCF | chr9:21466020-21466170 | BE2_C | brain: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 49 | CTCF | chr9:21466040-21466190 | AG04449 | skin: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| 50 | CTCF | chr9:21465999-21466218 | GM13977 | blood: | n/a | chr9:21466105-21466123 chr9:21466107-21466128 chr9:21466106-21466122 chr9:21466108-21466121 |
| No data |
(count:8 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:21465480..21466871-chr9:21788898..21790282,6 | MCF-7 | breast: | |
| 2 | chr9:21465639..21466595-chr9:21789434..21790168,4 | MCF-7 | breast: | |
| 3 | chr9:21464451..21467378-chr9:21800569..21802345,2 | MCF-7 | breast: | |
| 4 | chr9:21492643..21493283-chr9:21789425..21789929,2 | MCF-7 | breast: | |
| 5 | chr9:21491433..21492444-chr9:21789127..21790263,7 | MCF-7 | breast: | |
| 6 | chr14:68668658..68669180-chr9:21520044..21520625,2 | HCT-116 | colon: | |
| 7 | chr11:61583818..61584553-chr9:21518322..21519322,2 | HCT-116 | colon: | |
| 8 | chr9:21496297..21498448-chr9:21802383..21804700,2 | MCF-7 | breast: |
(count:15 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-IFNE-1 | chr9:21476873-21477034 | NONHSAT130389 |
| 2 | lnc-IFNE-1 | chr9:21477168-21477291 | NONHSAT130385 |
| 3 | lnc-IFNE-1 | chr9:21455641-21455943 | ENSG00000171889 |
| 4 | lnc-IFNE-1 | chr9:21476898-21477034 | NONHSAT130385 |
| 5 | lnc-IFNE-1 | chr9:21477168-21477292 | NONHSAT130389 |
| 6 | lnc-IFNA1-1 | chr9:21455483-21456048 | NONHSAT130387 |
| 7 | lnc-IFNE-1 | chr9:21477168-21477292 | NONHSAT130388 |
| 8 | lnc-IFNE-1 | chr9:21476898-21477034 | ENSG00000171889 |
| 9 | lnc-IFNE-1 | chr9:21455587-21455943 | NONHSAT130388 |
| 10 | lnc-IFNE-1 | chr9:21476898-21477034 | NONHSAT130388 |
| 11 | lnc-IFNE-1 | chr9:21454267-21455943 | NONHSAT130386 |
| 12 | lnc-IFNE-1 | chr9:21454267-21455943 | NONHSAT130385 |
| 13 | lnc-IFNE-1 | chr9:21476898-21477034 | NONHSAT130386 |
| 14 | lnc-IFNE-1 | chr9:21477168-21477291 | ENSG00000171889 |
| 15 | lnc-IFNE-1 | chr9:21477168-21477291 | NONHSAT130386 |
| miRNA name | Chromosome Location | mirBase accession |
|---|---|---|
| hsa-miR-31-5p | chr9:21512157-21512177 | MIMAT0000089 |
| hsa-miR-31-3p | chr9:21512120-21512141 | MIMAT0004504 |
| No data |
| Variant related genes | Relation type |
|---|---|
| MIR31 | TF binding region |
| ENSG00000264379 | TF binding region |
| IFNE | TF binding region |
| ENSG00000149485 | chromatin interactions |
| ENSG00000099810 | chromatin interactions |
| ENSG00000134824 | chromatin interactions |
| ENSG00000264545 | chromatin interactions |
| MCM2 | Mature miRNA region |
| NUP188 | Mature miRNA region |
| FZD3 | Mature miRNA region |
| EDC3 | Mature miRNA region |
| MCM4 | Mature miRNA region |
| SELE | Mature miRNA region |
| RANGAP1 | Mature miRNA region |
| FOXP3 | Mature miRNA region |
| MET | Mature miRNA region |
| DACT3 | Mature miRNA region |
| NUMB | Mature miRNA region |
| CASR | Mature miRNA region |
| EXOC6 | Mature miRNA region |
| HOXC13 | Mature miRNA region |
| HEATR2 | Mature miRNA region |
| KLF13 | Mature miRNA region |
| LATS2 | Mature miRNA region |
| DDX19A | Mature miRNA region |
| PTPRJ | Mature miRNA region |
| DNAJC5 | Mature miRNA region |
| NFAT5 | Mature miRNA region |
| C2CD5 | Mature miRNA region |
| PPIA | Mature miRNA region |
| PCSK1N | Mature miRNA region |
| HOXA7 | Mature miRNA region |
| PPP2R5C | Mature miRNA region |
| NOP56 | Mature miRNA region |
| LRRC59 | Mature miRNA region |
| RPS7 | Mature miRNA region |
| HIST1H2BJ | Mature miRNA region |
| FAM134C | Mature miRNA region |
| ATP2A2 | Mature miRNA region |
| ETS1 | Mature miRNA region |
| TRRAP | Mature miRNA region |
| CXCL12 | Mature miRNA region |
| DKK1 | Mature miRNA region |
| RPS4Y1 | Mature miRNA region |
| PPIL2 | Mature miRNA region |
| NUS1 | Mature miRNA region |
| ZC3H12C | Mature miRNA region |
| ZNF275 | Mature miRNA region |
| STOML2 | Mature miRNA region |
| RHOA | Mature miRNA region |
| DMD | Mature miRNA region |
| XK | Mature miRNA region |
| NDFIP2 | Mature miRNA region |
| HIST1H2BK | Mature miRNA region |
| MMP16 | Mature miRNA region |
| RICTOR | Mature miRNA region |
| TRIB3 | Mature miRNA region |
| HIF1AN | Mature miRNA region |
| AGO1 | Mature miRNA region |
| TIAM1 | Mature miRNA region |
| MLH1 | Mature miRNA region |
| MED12 | Mature miRNA region |
| NFATC2IP | Mature miRNA region |
| AKAP8L | Mature miRNA region |
| PEX19 | Mature miRNA region |
| TNKS2 | Mature miRNA region |
| TXNDC5 | Mature miRNA region |
| MYO1D | Mature miRNA region |
| ICAM1 | Mature miRNA region |
| GLI2 | Mature miRNA region |
| RPL37A | Mature miRNA region |
| CIPC | Mature miRNA region |
| EXOSC5 | Mature miRNA region |
| SMEK2 | Mature miRNA region |
| JAZF1 | Mature miRNA region |
| PPP2R2A | Mature miRNA region |
| STK40 | Mature miRNA region |
| GYG1 | Mature miRNA region |
| CDK1 | Mature miRNA region |
| ARL6IP5 | Mature miRNA region |
| RASA1 | Mature miRNA region |
| TNRC6B | Mature miRNA region |
| RET | Mature miRNA region |
| SRRM2 | Mature miRNA region |
| MPRIP | Mature miRNA region |
| ITGA5 | Mature miRNA region |
| GHITM | Mature miRNA region |
| SATB2 | Mature miRNA region |
| RDX | Mature miRNA region |
| ZC3H18 | Mature miRNA region |
| CREG1 | Mature miRNA region |
| PRKCE | Mature miRNA region |
| HIST1H2BI | Mature miRNA region |
| SFXN1 | Mature miRNA region |
| ARPC5 | Mature miRNA region |
| ACADVL | Mature miRNA region |
| C1orf198 | Mature miRNA region |
| INHBA | Mature miRNA region |
| RAN | Mature miRNA region |
| YY1 | Mature miRNA region |
| NOL9 | Mature miRNA region |
| UBA6 | Mature miRNA region |
| DBR1 | Mature miRNA region |
| FLNA | Mature miRNA region |
| SLC9A6 | Mature miRNA region |
| CYP27B1 | Mature miRNA region |
| ILF2 | Mature miRNA region |
| RPA1 | Mature miRNA region |
| EEF1A1 | miRNA target sites |
| RPP40 | miRNA target sites |
| RAB14 | miRNA target sites |
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs376094296 | chr9:21455763-21455764 | Weak transcription Genic enhancers Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs556175530 | chr9:21455804-21455805 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs10965002 | chr9:21455814-21455815 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 4 | rs116295480 | chr9:21455815-21455816 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 5 | rs539883894 | chr9:21455831-21455832 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 6 | rs560161707 | chr9:21455845-21455846 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 7 | rs534359317 | chr9:21455853-21455854 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 8 | rs199680563 | chr9:21455869-21455870 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 9 | rs569744130 | chr9:21455914-21455915 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 10 | rs532215822 | chr9:21455915-21455916 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 11 | rs531830407 | chr9:21455975-21455976 | Weak transcription Strong transcription Genic enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 12 | rs147801927 | chr9:21456003-21456004 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 13 | rs565473230 | chr9:21456015-21456016 | Weak transcription Strong transcription | lncRNA | n/a | Overlapped CNVs | n/a |
| 14 | rs189956801 | chr9:21456060-21456061 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs141289848 | chr9:21456120-21456121 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs56106002 | chr9:21456204-21456205 | Weak transcription Strong transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 17 | rs535760725 | chr9:21456216-21456217 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs146984170 | chr9:21456234-21456235 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs113010660 | chr9:21456237-21456238 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs536751267 | chr9:21456242-21456243 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs550336361 | chr9:21456245-21456246 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs183803620 | chr9:21456247-21456248 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs538069418 | chr9:21456248-21456249 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs189116196 | chr9:21456254-21456255 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs371348519 | chr9:21456256-21456257 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs577878526 | chr9:21456288-21456289 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 27 | rs568595166 | chr9:21456303-21456304 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 28 | rs533754206 | chr9:21456314-21456315 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 29 | rs148059181 | chr9:21456366-21456367 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 30 | rs191466944 | chr9:21456374-21456375 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 31 | rs556799013 | chr9:21456394-21456395 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 32 | rs112012137 | chr9:21456491-21456492 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 33 | rs183684387 | chr9:21456492-21456493 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 34 | rs562269689 | chr9:21456513-21456514 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 35 | rs187809788 | chr9:21456619-21456620 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 36 | rs150188495 | chr9:21456641-21456642 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 37 | rs565545084 | chr9:21456661-21456662 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 38 | rs115498944 | chr9:21456677-21456678 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 39 | rs575100202 | chr9:21456678-21456679 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 40 | rs191634531 | chr9:21456691-21456692 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 41 | rs138735455 | chr9:21456697-21456698 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 42 | rs530161616 | chr9:21456699-21456700 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 43 | rs539246767 | chr9:21456721-21456722 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 44 | rs116700521 | chr9:21456752-21456753 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 45 | rs184146506 | chr9:21456763-21456764 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 46 | rs111633772 | chr9:21456768-21456769 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 47 | rs573272990 | chr9:21456772-21456773 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 48 | rs10491569 | chr9:21456776-21456777 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | mRNA abundance |
| 49 | rs534394252 | chr9:21456797-21456798 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
| 50 | rs571472361 | chr9:21456799-21456800 | Weak transcription Strong transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:159)
| Disease | PMID | Source |
|---|---|---|
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Cervical cancer | 21063398 | CNVD |
| Retinoblastoma | 22278416 | CNVD |
| Splenic marginal zone lymphoma | 18492102 | CNVD |
| Melanoma | 18172304 | CNVD |
| Biliary cancer | 19435499 | CNVD |
| Gastric cancer | 21586687 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Myopathy | 18421352 | CNVD |
| Neuroblastoma | 18664255 | CNVD |
| Acute lymphoblastic leukemia | 18957548 | CNVD |
| Myeloproliferative neoplasm | 17564968 | CNVD |
| Malignant meningioma | 17937814 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Glioma | 21971842 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Oligodendroglial tumors | 17285580 | CNVD |
| Cutaneous squamous cell carcinomas | 19131950 | CNVD |
| Small bowel adenocarcinoma | 21586687 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Chordoma | 18071362 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Chordoma | 21602918 | CNVD |
| Renal cell carcinoma | 18592004 | CNVD |
| Developmental delay | 19490664 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| microdeletion syndrome | 16199537 | CNVD |
| Non-syndromic sensorineural hearing loss | 21987784 | CNVD |
| Cancer | 20164919 | CNVD |
| Ovarian cancer | 21720365 | CNVD |
| Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Oral cancer | 21386901 | CNVD |
| lymphocytic leukemia | 21291569 | CNVD |
| Acute lymphoblastic leukemia | 21339820 | CNVD |
| Chronic myeloid leukemia | 21384125 | CNVD |
| Breast cancer | 21785460 | CNVD |
| Esophageal adenocarcinoma | 19417022 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Renal cell carcinoma | 21668985 | CNVD |
| Myelodysplastic syndrome | 21251322 | CNVD |
| Autism | 22495311 | CNVD |
| Hepatocellular carcinoma | 18803288 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Developmental delay | 21147756 | CNVD |
| Pilocytic astrocytoma | 18670637 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Melanoma | 22183965 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Non-small cell lung cancer | 19010865 | CNVD |
| Myoepithelioma | 18604193 | CNVD |
| Cancer | 22183965 | CNVD |
| Glioblastoma multiforme | 21569311 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Ewing''s sarcoma | 22429812 | CNVD |
| Neuroblastoma | 21899760 | CNVD |
| Glioblastoma multiforme | 19435819 | CNVD |
| Acute lymphoblastic leukemia | 21390130 | CNVD |
| Cutaneous T-cell lymphoma | 21881587 | CNVD |
| Glioblastoma multiforme | 22291905 | CNVD |
| Lung cancer | 21911935 | CNVD |
| Primary central nervous system lymphoma | 21088137 | CNVD |
| head and neck squamous cell carcinoma | 21798897 | CNVD |
| Cancer | 21253487 | CNVD |
| Glioblastoma multiforme | 22286061 | CNVD |
| Intracranial ependymoma | 16609018 | CNVD |
| Gastrointestinal stromal cancer | 16982739 | CNVD |
| Glioblastoma multiforme | 21922591 | CNVD |
| Acute lymphoblastic leukemia | 17443227 | CNVD |
| Barrett''s adenocarcinoma | 18663352 | CNVD |
| T-cell acute lymphoblastic leukemia | 19406988 | CNVD |
| Urothelial cell carcinoma | 18451213 | CNVD |
| Glioma | 17123091 | CNVD |
| Mental retardation | 17124404 | CNVD |
| Acute lymphoblastic leukemia | 19100363 | CNVD |
| Acute lymphoblastic leukemia | 18768390 | CNVD |
| Leukemia | 19602459 | CNVD |
| Acute monocytic leukemia | 16498392 | CNVD |
| Esophageal squamous carcinoma | 18405350 | CNVD |
| Malignant mesothelioma | 18160781 | CNVD |
| Pleural malignant mesothelioma | 18160781 | CNVD |
| Leukemia | 18688285 | CNVD |
| T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
| Acute myeloid leukemia | 19651601 | CNVD |
| Coronary Disease | 20032323 | CNVD |
| Squamous cell cancer | 20885788 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Cancer | 21732550 | CNVD |
| Gastric cancer | 22539939 | CNVD |
| Cancer | 21183584 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Diffuse large b-cell lymphoma | 18287131 | CNVD |
| Metastatic melanoma | 18483359 | CNVD |
| Non-small cell lung cancer | 20864512 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Glioblastoma | 17090523 | CNVD |
| Lung cancer | 16773561 | CNVD |
| Adenoid cystic carcinoma | 17372589 | CNVD |
| Colorectal cancer | 16774939 | CNVD |
| Bladder cancer | 19088036 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Melanoma | 16977458 | CNVD |
| Glioblastoma multiforme | 17369134 | CNVD |
| Chagasic megaesophagus | 20163722 | CNVD |
| Melanoma | 19566914 | CNVD |
| Squamous cell cancer | 19047905 | CNVD |
| Lung adenocarcinoma | 19525976 | CNVD |
| Lung cancer | 19525976 | CNVD |
| Hodgkin''s lymphoma | 18179710 | CNVD |
| Glioma | 20126413 | CNVD |
| Melanoma | 17363583 | CNVD |
| Glioblastoma multiforme | 19115005 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| Glioblastoma multiforme | 21138945 | CNVD |
| Adenoid cystic carcinoma | 18332873 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Cancer | 20581869 | CNVD |
| Multiple myeloma | 17550852 | CNVD |
| Intellectual disability | 22102821 | CNVD |
| Oral cancer | 22144094 | CNVD |
| Lung cancer | 21569311 | CNVD |
| Epilepsy | 20502679 | CNVD |
| Barrett''s syndrome | 19417022 | CNVD |
| Pancreatic cancer | 21811587 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Autism | 20858261 | CNVD |
| Epilepsy | 20858261 | CNVD |
| Mental retardation | 20858261 | CNVD |
| Chronic lymphocytic leukemia | 21215367 | CNVD |
| Renal cell carcinoma | 21215367 | CNVD |
| Ovarian cancer | 21781307 | CNVD |
| Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
| Cancer | 20164920 | CNVD |
| Non-small cell lung cancer | 16651412 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:21451400-21458800 | Weak transcription | A549 | lung |
| 2 | chr9:21451800-21457600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 3 | chr9:21453200-21456200 | Strong transcription | NH-A | brain |
| 4 | chr9:21453800-21455800 | Genic enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 5 | chr9:21453800-21456000 | Genic enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 6 | chr9:21454400-21456200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 7 | chr9:21454800-21474400 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 8 | chr9:21454800-21481600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 9 | chr9:21455000-21455800 | Strong transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 10 | chr9:21455000-21456800 | Weak transcription | Hela-S3 | cervix |
| 11 | chr9:21455000-21457200 | Strong transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 12 | chr9:21455200-21456000 | Genic enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 13 | chr9:21455200-21456000 | Genic enhancers | NHEK | skin |
| 14 | chr9:21455200-21457200 | Strong transcription | Osteobl | bone |
| 15 | chr9:21455200-21464000 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 16 | chr9:21455200-21481000 | Weak transcription | NHDF-Ad | bronchial |
| 17 | chr9:21455400-21456000 | Strong transcription | HMEC | breast |
| 18 | chr9:21455400-21456400 | Strong transcription | Muscle Satellite Cultured Cells | -- |
| 19 | chr9:21455400-21462600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 20 | chr9:21455600-21455800 | Genic enhancers | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 21 | chr9:21455600-21456000 | Genic enhancers | NHLF | lung |
| 22 | chr9:21455800-21456000 | Strong transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 23 | chr9:21455800-21457000 | Strong transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 24 | chr9:21455800-21481000 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 25 | chr9:21456000-21457200 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 26 | chr9:21456000-21462800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 27 | chr9:21456000-21463200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 28 | chr9:21456000-21465000 | Weak transcription | NHEK | skin |
| 29 | chr9:21456000-21465400 | Weak transcription | HMEC | breast |
| 30 | chr9:21456000-21476600 | Weak transcription | NHLF | lung |
| 31 | chr9:21456200-21461400 | Weak transcription | NH-A | brain |
| 32 | chr9:21456400-21462400 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 33 | chr9:21457000-21462000 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 34 | chr9:21457200-21460400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 35 | chr9:21457200-21462600 | Weak transcription | Osteobl | bone |
| 36 | chr9:21457200-21462800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 37 | chr9:21460400-21461800 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 38 | chr9:21461400-21466200 | Strong transcription | NH-A | brain |
| 39 | chr9:21461800-21462600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 40 | chr9:21462000-21466000 | Strong transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 41 | chr9:21462200-21463000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 42 | chr9:21462400-21464200 | Weak transcription | HUVEC | blood vessel |
| 43 | chr9:21462400-21466000 | Strong transcription | Muscle Satellite Cultured Cells | -- |
| 44 | chr9:21462600-21466000 | Strong transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 45 | chr9:21462600-21466800 | Strong transcription | Osteobl | bone |
| 46 | chr9:21462600-21474600 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 47 | chr9:21462800-21463200 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 48 | chr9:21462800-21463200 | Strong transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 49 | chr9:21463000-21463200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 50 | chr9:21463000-21502200 | Weak transcription | HSMM | muscle |
