Variant report

Variant	nsv103008
Chromosome Location	chr16:77206739-77210805
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:77206067..77208430-chr16:77215088..77217473,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 78 )

Variant overlapped rSNPs/rCNVs (count:46 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529005333	chr16:77206748-77206749	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs534419019	chr16:77206770-77206771	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs7499780	chr16:77206801-77206802	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs80003109	chr16:77206838-77206839	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs201702789	chr16:77206839-77206840	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs78929425	chr16:77206841-77206842	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs112043441	chr16:77206853-77206854	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs531472984	chr16:77206854-77206855	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs58365638	chr16:77206855-77206856	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs577479278	chr16:77206864-77206865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs180673843	chr16:77206905-77206906	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs542338661	chr16:77206920-77206921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs60295729	chr16:77206934-77206935	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs186447080	chr16:77206935-77206936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs562139753	chr16:77206938-77206939	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs531245047	chr16:77206968-77206969	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs545244017	chr16:77206976-77206977	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs565055803	chr16:77207002-77207003	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs527450078	chr16:77207014-77207015	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs547260499	chr16:77207017-77207018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs189698127	chr16:77207053-77207054	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs555063572	chr16:77207056-77207057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs7190814	chr16:77207072-77207073	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs139077646	chr16:77207085-77207086	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs564258729	chr16:77207099-77207100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs533119178	chr16:77207114-77207115	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs370925546	chr16:77207115-77207116	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs549798453	chr16:77207184-77207185	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs149477889	chr16:77207202-77207203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs548576690	chr16:77207214-77207215	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs568586141	chr16:77207221-77207222	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs376743056	chr16:77207245-77207246	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs181222617	chr16:77207257-77207258	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs547678472	chr16:77207316-77207317	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs371300809	chr16:77207374-77207375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs571022017	chr16:77207461-77207462	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs539786090	chr16:77207462-77207463	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs556416841	chr16:77207530-77207531	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs375467979	chr16:77207543-77207544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs186199412	chr16:77207546-77207547	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs143893181	chr16:77207599-77207600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs368452092	chr16:77207654-77207655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs554901502	chr16:77207668-77207669	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs571809141	chr16:77207687-77207688	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs541115139	chr16:77207741-77207742	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs375216049	chr16:77207785-77207786	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:78)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	22958593	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16702952	CNVD
Medulloblastoma	16968546	CNVD
Prostate cancer	19242612	CNVD
Cancer	22429812	CNVD
Ewing''s sarcoma	21437220	CNVD
Ewing''s sarcoma	22429812	CNVD
Melanoma	18172304	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Multiple myeloma	21628407	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	17001317	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	17603634	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	17245344	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21806811	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Melanoma	22183965	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Poland''s syndrome	22110015	CNVD
Neuroblastoma	21899760	CNVD
Liver carcinoma	19366792	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Lung cancer	18438408	CNVD
Prostate cancer	19156837	CNVD
Acute myeloid leukemia	17377590	CNVD
Breast cancer	20409316	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	21509527	CNVD
Lung cancer	24585490	CNVD
Cancer	20164920	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Cancer	20581869	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
early-passage human iPS cells	21368824	CNVD
Melanoma	17363583	CNVD
Ovarian cancer	21720365	CNVD
Bipolar disorder	19114987	CNVD

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:77206000-77207600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr16:77206200-77207800	Enhancers	HUVEC	blood vessel
3	chr16:77206800-77207200	Enhancers	Cortex derived primary cultured neurospheres	brain

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