Variant report
Variant | nsv1030546 |
---|---|
Chromosome Location | chr6:162748287-163475085 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:2867)
- CpG islands (count:2506)
- Chromatin interactive region (count:69)
- LncRNA region (count:21)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr6:162910482-162910786 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr6:162857639-162857816 | HepG2 | liver: | n/a | n/a |
3 | ARID3A | chr6:163102512-163102850 | HepG2 | liver: | n/a | n/a |
4 | ARID3A | chr6:163148619-163149118 | HepG2 | liver: | n/a | n/a |
5 | ARID3A | chr6:163304083-163304357 | HepG2 | liver: | n/a | n/a |
6 | ARID3A | chr6:162794306-162794665 | HepG2 | liver: | n/a | n/a |
7 | ARID3A | chr6:163148702-163148902 | K562 | blood: | n/a | n/a |
8 | ATF1 | chr6:162812215-162812339 | K562 | blood: | n/a | n/a |
9 | ATF1 | chr6:162812647-162812847 | K562 | blood: | n/a | n/a |
10 | ATF1 | chr6:162782228-162782581 | K562 | blood: | n/a | n/a |
11 | ATF1 | chr6:163148753-163149159 | K562 | blood: | n/a | n/a |
12 | ATF1 | chr6:162784797-162785113 | K562 | blood: | n/a | n/a |
13 | ATF1 | chr6:163037119-163037243 | K562 | blood: | n/a | n/a |
14 | ATF1 | chr6:163183429-163183540 | K562 | blood: | n/a | n/a |
15 | ATF2 | chr6:163148704-163149149 | GM12878 | blood: | n/a | chr6:163148957-163148968 |
16 | ATF2 | chr6:163042363-163042635 | GM12878 | blood: | n/a | n/a |
17 | ATF2 | chr6:163422341-163422769 | GM12878 | blood: | n/a | n/a |
18 | ATF2 | chr6:163148726-163149178 | H1-hESC | embryonic stem cell: | n/a | chr6:163148957-163148968 |
19 | ATF2 | chr6:163148705-163149166 | GM12878 | blood: | n/a | chr6:163148957-163148968 |
20 | ATF2 | chr6:163148711-163149191 | H1-hESC | embryonic stem cell: | n/a | chr6:163148957-163148968 |
21 | ATF3 | chr6:163148498-163149119 | HepG2 | liver: | n/a | chr6:163148957-163148968 chr6:163148970-163148979 chr6:163148959-163148967 chr6:163148957-163148970 chr6:163148955-163148970 chr6:163148957-163148968 chr6:163148959-163148970 chr6:163148958-163148978 chr6:163148956-163148969 chr6:163148848-163148857 chr6:163148959-163148969 |
22 | ATF3 | chr6:163303885-163304152 | H1-hESC | embryonic stem cell: | n/a | n/a |
23 | ATF3 | chr6:163148729-163149180 | H1-hESC | embryonic stem cell: | n/a | chr6:163148957-163148968 chr6:163148970-163148979 chr6:163148959-163148967 chr6:163148957-163148970 chr6:163148955-163148970 chr6:163148957-163148968 chr6:163148959-163148970 chr6:163148958-163148978 chr6:163148956-163148969 chr6:163148848-163148857 chr6:163148959-163148969 |
24 | ATF3 | chr6:163148789-163149068 | H1-hESC | embryonic stem cell: | n/a | chr6:163148957-163148968 chr6:163148970-163148979 chr6:163148959-163148967 chr6:163148957-163148970 chr6:163148955-163148970 chr6:163148957-163148968 chr6:163148959-163148970 chr6:163148958-163148978 chr6:163148956-163148969 chr6:163148848-163148857 chr6:163148959-163148969 |
25 | ATF3 | chr6:163148710-163149085 | K562 | blood: | n/a | chr6:163148957-163148968 chr6:163148970-163148979 chr6:163148959-163148967 chr6:163148957-163148970 chr6:163148955-163148970 chr6:163148957-163148968 chr6:163148959-163148970 chr6:163148958-163148978 chr6:163148956-163148969 chr6:163148848-163148857 chr6:163148959-163148969 |
26 | ATF3 | chr6:163303817-163304198 | H1-hESC | embryonic stem cell: | n/a | n/a |
27 | ATF3 | chr6:163148738-163149179 | K562 | blood: | n/a | chr6:163148957-163148968 chr6:163148970-163148979 chr6:163148959-163148967 chr6:163148957-163148970 chr6:163148955-163148970 chr6:163148957-163148968 chr6:163148959-163148970 chr6:163148958-163148978 chr6:163148956-163148969 chr6:163148848-163148857 chr6:163148959-163148969 |
28 | ATF3 | chr6:163042298-163042684 | HCT-116 | colon: | n/a | n/a |
29 | ATF3 | chr6:162784742-162785052 | K562 | blood: | n/a | n/a |
30 | BACH1 | chr6:163148603-163148838 | H1-hESC | embryonic stem cell: | n/a | n/a |
31 | BACH1 | chr6:163149073-163149266 | K562 | blood: | n/a | n/a |
32 | BACH1 | chr6:163209996-163210055 | K562 | blood: | n/a | n/a |
33 | BACH1 | chr6:162975725-162976098 | K562 | blood: | n/a | n/a |
34 | BACH1 | chr6:163277893-163278240 | H1-hESC | embryonic stem cell: | n/a | n/a |
35 | BATF | chr6:163422337-163422713 | GM12878 | blood: | n/a | chr6:163422593-163422603 |
36 | BATF | chr6:163042347-163042655 | GM12878 | blood: | n/a | chr6:163042519-163042530 |
37 | BATF | chr6:163042398-163042636 | GM12878 | blood: | n/a | chr6:163042519-163042530 |
38 | BATF | chr6:163422365-163422747 | GM12878 | blood: | n/a | chr6:163422593-163422603 |
39 | BCL11A | chr6:163422413-163422668 | GM12878 | blood: | n/a | n/a |
40 | BCL11A | chr6:163422425-163422741 | GM12878 | blood: | n/a | n/a |
41 | BCL3 | chr6:163295660-163296500 | GM12878 | blood: | n/a | n/a |
42 | BCL3 | chr6:163295916-163296614 | GM12878 | blood: | n/a | n/a |
43 | BCLAF1 | chr6:163148707-163149054 | GM12878 | blood: | n/a | chr6:163148747-163148760 |
44 | BHLHE40 | chr6:162899266-162899534 | GM12878 | blood: | n/a | n/a |
45 | BHLHE40 | chr6:163148582-163149115 | K562 | blood: | n/a | chr6:163148747-163148763 |
46 | BHLHE40 | chr6:163102590-163102846 | HepG2 | liver: | n/a | n/a |
47 | BHLHE40 | chr6:163148554-163149138 | HepG2 | liver: | n/a | chr6:163148747-163148763 |
48 | BHLHE40 | chr6:163042376-163042676 | GM12878 | blood: | n/a | n/a |
49 | BHLHE40 | chr6:163304111-163304430 | HepG2 | liver: | n/a | n/a |
50 | BHLHE40 | chr6:163148697-163149088 | GM12878 | blood: | n/a | chr6:163148747-163148763 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:163289702-163289752 | GM12892 | blood: | n/a |
2 | chr6:163148718-163148768 | HCF | heart: | n/a |
3 | chr6:163149453-163149503 | HCT-116 | colon: | n/a |
4 | chr6:163148777-163148827 | T-47D | breast: | n/a |
5 | chr6:163148762-163148812 | MCF10A-Er-Src | breast: | n/a |
6 | chr6:163289702-163289752 | GM12892 | blood: | n/a |
7 | chr6:163148718-163148768 | HCF | heart: | n/a |
8 | chr6:163149453-163149503 | HCT-116 | colon: | n/a |
9 | chr6:163148777-163148827 | T-47D | breast: | n/a |
10 | chr6:163148762-163148812 | MCF10A-Er-Src | breast: | n/a |
11 | chr6:163321305-163321355 | HIPEpiC | eye: | n/a |
12 | chr6:163149167-163149217 | NHBE | bronchial: | n/a |
13 | chr6:162831837-162831887 | GM19239 | blood: | n/a |
14 | chr6:163275980-163276030 | CMK | blood: | n/a |
15 | chr6:163362155-163362205 | HRPEpiC | eye: | n/a |
16 | chr6:163275980-163276030 | RPTEC | kidney: | n/a |
17 | chr6:163149453-163149503 | BE2_C | brain: | n/a |
18 | chr6:163321157-163321207 | SKMC | muscle: | n/a |
19 | chr6:163273217-163273267 | HAEpiC | amniotic membrane: | n/a |
20 | chr6:163147737-163147787 | HPAEpiC | pulmonary alveolar: | n/a |
21 | chr6:163149453-163149503 | Hepatocyte | liver: | n/a |
22 | chr6:163275952-163276002 | BJ | skin: | n/a |
23 | chr6:163024624-163024674 | GM12892 | blood: | n/a |
24 | chr6:163199983-163200033 | NHBE | bronchial: | n/a |
25 | chr6:163149169-163149219 | HMEC | breast: | n/a |
26 | chr6:163148022-163148072 | NHBE | bronchial: | n/a |
27 | chr6:163148777-163148827 | GM06990 | blood: | n/a |
28 | chr6:163147999-163148049 | SK-N-SH_RA | brain: | n/a |
29 | chr6:163321435-163321485 | HCM | heart: | n/a |
30 | chr6:163321157-163321207 | HAEpiC | amniotic membrane: | n/a |
31 | chr6:163149167-163149217 | HL-60 | blood: | n/a |
32 | chr6:162831837-162831887 | NT2-D1 | testis: | n/a |
33 | chr6:163321157-163321207 | A549 | lung: | n/a |
34 | chr6:163200038-163200088 | GM12878 | blood: | n/a |
35 | chr6:163149674-163149724 | HCM | heart: | n/a |
36 | chr6:163148022-163148072 | GM12891 | blood: | n/a |
37 | chr6:163148853-163148903 | PANC-1 | pancreas: | n/a |
38 | chr6:162831837-162831887 | U87 | brain: | n/a |
39 | chr6:163321305-163321355 | CMK | blood: | n/a |
40 | chr6:163276038-163276088 | BJ | skin: | n/a |
41 | chr6:163199983-163200033 | HIPEpiC | eye: | n/a |
42 | chr6:163321435-163321485 | HCT-116 | colon: | n/a |
43 | chr6:163148762-163148812 | NHDF-neo | bronchial: | n/a |
44 | chr6:163146217-163146267 | GM19239 | blood: | n/a |
45 | chr6:163148290-163148340 | GM19239 | blood: | n/a |
46 | chr6:163147733-163147783 | SK-N-MC | brain: | n/a |
47 | chr6:163110854-163110904 | ECC-1 | luminal epithelium: | n/a |
48 | chr6:163362155-163362205 | NHBE | bronchial: | n/a |
49 | chr6:162865258-162865308 | PANC-1 | pancreas: | n/a |
50 | chr6:163276038-163276088 | AG09309 | skin: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:162799485..162803733-chr6:162804296..162807777,5 | K562 | blood: | |
2 | chr6:163258403..163260425-chr6:163266356..163268701,2 | K562 | blood: | |
3 | chr6:163103043..163104996-chr6:163109382..163111025,2 | K562 | blood: | |
4 | chr6:163130642..163133409-chr6:163136938..163139480,2 | K562 | blood: | |
5 | chr6:163080104..163081787-chr6:163082227..163083951,2 | K562 | blood: | |
6 | chr6:162960178..162962006-chr6:162962880..162965078,2 | K562 | blood: | |
7 | chr6:163312379..163314050-chr6:163315693..163317902,2 | K562 | blood: | |
8 | chr6:162820265..162823089-chr6:162827852..162829559,2 | K562 | blood: | |
9 | chr6:163080104..163081787-chr6:163082227..163083951,2 | K562 | blood: | |
10 | chr6:163111769..163114753-chr6:163116374..163118174,2 | K562 | blood: | |
11 | chr6:162902802..162905070-chr6:162905406..162907332,2 | K562 | blood: | |
12 | chr6:163117200..163118947-chr6:163123211..163125034,2 | K562 | blood: | |
13 | chr6:163320477..163321997-chr6:163470936..163472773,2 | K562 | blood: | |
14 | chr6:163077595..163080176-chr6:163085064..163087575,2 | K562 | blood: | |
15 | chr6:163002877..163005708-chr6:163021910..163024946,3 | K562 | blood: | |
16 | chr6:163135428..163138047-chr6:163139216..163143407,3 | K562 | blood: | |
17 | chr6:162863816..162864618-chr6:163271757..163272511,2 | MCF-7 | breast: | |
18 | chr6:163146966..163150271-chr6:163157232..163160053,3 | K562 | blood: | |
19 | chr6:163238180..163239692-chr6:163244197..163245718,2 | K562 | blood: | |
20 | chr6:163312379..163314050-chr6:163315693..163317902,2 | K562 | blood: | |
21 | chr6:163100762..163102270-chr6:163108804..163111519,2 | K562 | blood: | |
22 | chr6:162863367..162864320-chr6:163157771..163158572,4 | MCF-7 | breast: | |
23 | chr6:163458107..163459739-chr6:163463183..163466142,2 | K562 | blood: | |
24 | chr6:162768506..162770213-chr6:162786241..162788330,2 | K562 | blood: | |
25 | chr6:163135428..163138047-chr6:163139216..163143407,3 | K562 | blood: | |
26 | chr6:163426091..163427659-chr6:163429418..163431049,2 | K562 | blood: | |
27 | chr6:162902802..162905070-chr6:162905406..162907332,2 | K562 | blood: | |
28 | chr6:163131701..163133797-chr6:163141922..163143768,2 | K562 | blood: | |
29 | chr6:162960178..162962006-chr6:162962880..162965078,2 | K562 | blood: | |
30 | chr6:163316641..163319996-chr6:163320032..163324686,4 | K562 | blood: | |
31 | chr4:72393798..72394589-chr6:163273105..163273631,2 | MCF-7 | breast: | |
32 | chr6:163467143..163469243-chr6:163471356..163474324,2 | K562 | blood: | |
33 | chr6:163117200..163118947-chr6:163123211..163125034,2 | K562 | blood: | |
34 | chr6:163111769..163114753-chr6:163116374..163118174,2 | K562 | blood: | |
35 | chr6:163132663..163134210-chr6:163147086..163148664,2 | K562 | blood: | |
36 | chr6:162863816..162864618-chr6:163271757..163272511,2 | MCF-7 | breast: | |
37 | chr6:163138657..163141393-chr6:163146602..163148183,2 | MCF-7 | breast: | |
38 | chr6:163429068..163430008-chrX:51497389..51498171,2 | MCF-7 | breast: | |
39 | chr6:163426091..163427659-chr6:163429418..163431049,2 | K562 | blood: | |
40 | chr6:162799485..162803733-chr6:162804296..162807777,5 | K562 | blood: | |
41 | chr6:163077595..163080176-chr6:163085064..163087575,2 | K562 | blood: | |
42 | chr6:162820265..162823089-chr6:162827852..162829559,2 | K562 | blood: | |
43 | chr6:162763017..162765353-chr6:162767098..162769301,2 | K562 | blood: | |
44 | chr6:163204105..163206331-chr6:163210537..163212839,2 | K562 | blood: | |
45 | chr12:104252627..104253426-chr6:163440642..163441162,2 | MCF-7 | breast: | |
46 | chr6:162671180..162673472-chr6:162808694..162811227,2 | K562 | blood: | |
47 | chr6:162768506..162770213-chr6:162786241..162788330,2 | K562 | blood: | |
48 | chr6:163142325..163145868-chr6:163146633..163149200,3 | K562 | blood: | |
49 | chr6:163002877..163005708-chr6:163021910..163024946,3 | K562 | blood: | |
50 | chr6:163332495..163335026-chr6:163337698..163339412,2 | K562 | blood: |
(count:21 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-AL078585.1-1 | chr6:163467616-163467715 | ENSG00000225437.1 |
2 | lnc-AL078585.1-1 | chr6:163465681-163465778 | ENSG00000225437.1 |
3 | lnc-AL078585.1-1 | chr6:163472292-163473064 | ENSG00000225437.1 |
4 | lnc-AL078585.1-1 | chr6:163463589-163463729 | ENSG00000225437.1 |
5 | lnc-AL078585.1-1 | chr6:163464012-163464201 | ENSG00000225437.1 |
6 | lnc-AL078585.1-13 | chr6:163384002-163384191 | ucscGeneNc_uc003qud_1 |
7 | lnc-AL078585.1-14 | chr6:163378290-163378580 | NONHSAT115947 |
8 | lnc-AL078585.1-1 | chr6:163471578-163473064 | NONHSAT115951 |
9 | lnc-AL078585.1-1 | chr6:163467647-163467715 | NONHSAT115951 |
10 | lnc-AL078585.1-1 | chr6:163467616-163467715 | ENSG00000225437.1 |
11 | lnc-AL078585.1-1 | chr6:163464011-163464201 | ENSG00000225437.1 |
12 | lnc-AL078585.1-1 | chr6:163467616-163467717 | ENSG00000225437.1 |
13 | lnc-AL078585.1-13 | chr6:163387606-163387705 | ucscGeneNc_uc003qud_1 |
14 | lnc-AL078585.1-1 | chr6:163472292-163472446 | ENSG00000225437.1 |
15 | lnc-AL078585.1-13 | chr6:163392282-163393054 | ucscGeneNc_uc003qud_1 |
16 | lnc-AL078585.1-1 | chr6:163474957-163475173 | NONHSAT115951 |
17 | lnc-QKI-10 | chr6:163307016-163311030 | NONHSAT115946 |
18 | lnc-AL078585.1-1 | chr6:163465681-163465778 | ENSG00000225437.1 |
19 | lnc-AL078585.1-1 | chr6:163474957-163475193 | ENSG00000225437.1 |
20 | lnc-AL078585.1-13 | chr6:163394947-163395183 | ucscGeneNc_uc003qud_1 |
21 | lnc-AL078585.1-1 | chr6:163464086-163464201 | ENSG00000225437.1 |
No data |
No data |
Variant related genes | Relation type |
---|---|
KRT8P44 | TF binding region |
ENSG00000225437 | TF binding region |
PACRG | TF binding region |
ENSG00000217557 | TF binding region |
PARK2 | TF binding region |
KRT8P44 | CpG island |
ENSG00000225437 | CpG island |
PACRG | CpG island |
ENSG00000217557 | CpG island |
PARK2 | CpG island |
ENSG00000112530 | chromatin interactions |
ENSG00000225437 | chromatin interactions |
ENSG00000270419 | chromatin interactions |
ENSG00000185345 | chromatin interactions |
ENSG00000112531 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs185570568 | chr6:162748309-162748310 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs143108489 | chr6:162748377-162748378 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs561208310 | chr6:162748385-162748386 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs112168971 | chr6:162748392-162748393 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs115854366 | chr6:162748397-162748398 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs190476326 | chr6:162748404-162748405 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs558804756 | chr6:162748448-162748449 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs114323888 | chr6:162748501-162748502 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs538908702 | chr6:162748521-162748522 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs558481979 | chr6:162748541-162748542 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs568486687 | chr6:162748549-162748550 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs9458524 | chr6:162748555-162748556 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
13 | rs181036290 | chr6:162748559-162748560 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs112274139 | chr6:162748595-162748596 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs113796909 | chr6:162748607-162748608 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs62430692 | chr6:162748613-162748614 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs138726217 | chr6:162748629-162748630 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs372092499 | chr6:162748630-162748631 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs184374952 | chr6:162748639-162748640 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs62430693 | chr6:162748649-162748650 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs62430694 | chr6:162748661-162748662 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs62430695 | chr6:162748667-162748668 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs67927985 | chr6:162748678-162748679 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs577082195 | chr6:162748728-162748729 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs546090943 | chr6:162748792-162748793 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs562749018 | chr6:162748805-162748806 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs148525328 | chr6:162748846-162748847 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs544606019 | chr6:162748850-162748851 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs73600117 | chr6:162748863-162748864 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs530089821 | chr6:162748908-162748909 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs547184751 | chr6:162748918-162748919 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs574879353 | chr6:162748927-162748928 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs113475865 | chr6:162748948-162748949 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs532690055 | chr6:162748952-162748953 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs79473416 | chr6:162748976-162748977 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs75642238 | chr6:162748977-162748978 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs6905464 | chr6:162748993-162748994 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
38 | rs371947217 | chr6:162749023-162749024 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs547873854 | chr6:162749038-162749039 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs568151136 | chr6:162749040-162749041 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs375086126 | chr6:162749051-162749052 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs71567639 | chr6:162749055-162749056 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs74724292 | chr6:162749067-162749068 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs181246655 | chr6:162749075-162749076 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs185349071 | chr6:162749093-162749094 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs577137924 | chr6:162749132-162749133 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs539626660 | chr6:162749133-162749134 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs188940993 | chr6:162749155-162749156 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs375850136 | chr6:162749162-162749163 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs386409190 | chr6:162749165-162749166 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Ependymoma | 16718352 | CNVD |
Gastric cancer | 17908304 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 16272173 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Malignant melanoma | 18718029 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Breast cancer | 21858162 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 17603634 | CNVD |
Developmental delay | 19490664 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Leukemia | 18688285 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Prostate cancer | 18632612 | CNVD |
Lung cancer | 18438408 | CNVD |
Burkitt''s lymphoma | 19759907 | CNVD |
Esophageal cancer | 21851588 | CNVD |
T-cell acute lymphoblastic leukemia | 18185524 | CNVD |
Breast cancer | 17133270 | CNVD |
Testicular germ cell tumor | 18059402 | CNVD |
Developmental delay | 21147756 | CNVD |
Chordoma | 18071362 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Autism | 22241247 | CNVD |
Breast cancer | 16397240 | CNVD |
Atherosclerosis | 21956041 | CNVD |
Maculopathy | 20981449 | CNVD |
Retinoblastoma | 22278416 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Ovarian cancer | 20844748 | CNVD |
Uveal melanoma | 20484589 | CNVD |
Glioblastoma multiforme | 19435819 | CNVD |
Astrocytoma | 16205629 | CNVD |
Parkinson disease | 17160897 | CNVD |
Cancer | 20164920 | CNVD |
Breast cancer | 22522925 | CNVD |
Schizophrenia | 20838587 | CNVD |
Early-onset parkinson disease | 21993715 | CNVD |
Glioblastoma | 18772890 | CNVD |
Pancreatic cancer | 20981101 | CNVD |
Autism | 21360662 | CNVD |
Melanoma | 20877625 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Parkinson disease | 0 | CNVD |
Cancer | 20164919 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Schizophrenia | 20967226 | CNVD |
Attention deficit hyperactivity disorder | 19546859 | CNVD |
Autism | 22495309 | CNVD |
Glioblastoma multiforme | 21138945 | CNVD |
Ovarian cancer | 22355333 | CNVD |
Schizophrenia | 19805367 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Schizophrenia | 21346763 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
abnormal development | 18461090 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:162728000-162765600 | Weak transcription | Pancreas | Pancrea |
2 | chr6:162747400-162749800 | Weak transcription | Ovary | ovary |
3 | chr6:162749600-162753000 | Weak transcription | Aorta | Aorta |
4 | chr6:162749800-162750000 | Strong transcription | Ovary | ovary |
5 | chr6:162750000-162753800 | Weak transcription | Ovary | ovary |
6 | chr6:162753200-162753600 | Enhancers | Adipose Nuclei | Adipose |
7 | chr6:162753600-162761000 | Weak transcription | Adipose Nuclei | Adipose |
8 | chr6:162755000-162766200 | Weak transcription | Ovary | ovary |
9 | chr6:162757800-162758000 | Enhancers | Gastric | stomach |
10 | chr6:162757800-162758800 | Enhancers | Fetal Heart | heart |
11 | chr6:162758600-162758800 | Enhancers | Gastric | stomach |
12 | chr6:162761400-162761600 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
13 | chr6:162761600-162766000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
14 | chr6:162762600-162763000 | Weak transcription | Adipose Nuclei | Adipose |
15 | chr6:162763400-162763800 | Enhancers | Fetal Lung | lung |
16 | chr6:162763600-162764200 | Enhancers | Stomach Mucosa | stomach |
17 | chr6:162763800-162765200 | Weak transcription | Fetal Lung | lung |
18 | chr6:162764000-162764600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
19 | chr6:162764400-162764800 | Enhancers | Brain Cingulate Gyrus | brain |
20 | chr6:162764400-162765400 | Active TSS | Adipose Nuclei | Adipose |
21 | chr6:162764400-162766200 | Enhancers | Fetal Muscle Leg | muscle |
22 | chr6:162764400-162766400 | Enhancers | NHDF-Ad | bronchial |
23 | chr6:162764400-162766800 | Enhancers | Brain Hippocampus Middle | brain |
24 | chr6:162764400-162767200 | Enhancers | HMEC | breast |
25 | chr6:162764400-162767400 | Enhancers | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
26 | chr6:162764400-162767600 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
27 | chr6:162764600-162765400 | Flanking Active TSS | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
28 | chr6:162764600-162766400 | Enhancers | Fetal Brain Male | brain |
29 | chr6:162764600-162767000 | Enhancers | Fetal Heart | heart |
30 | chr6:162764800-162765400 | Enhancers | Cortex derived primary cultured neurospheres | brain |
31 | chr6:162764800-162766200 | Weak transcription | Brain Cingulate Gyrus | brain |
32 | chr6:162765000-162765400 | Enhancers | HSMM | muscle |
33 | chr6:162765000-162765600 | Enhancers | Brain Inferior Temporal Lobe | brain |
34 | chr6:162765000-162765800 | Enhancers | Skeletal Muscle Male | skeletal muscle |
35 | chr6:162765000-162766200 | Enhancers | Brain Substantia Nigra | brain |
36 | chr6:162765000-162766400 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
37 | chr6:162765000-162766400 | Enhancers | Brain Angular Gyrus | brain |
38 | chr6:162765000-162766400 | Enhancers | Right Atrium | heart |
39 | chr6:162765000-162766800 | Enhancers | Muscle Satellite Cultured Cells | -- |
40 | chr6:162765000-162767200 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
41 | chr6:162765000-162767200 | Enhancers | NHEK | skin |
42 | chr6:162765200-162765600 | Enhancers | Fetal Lung | lung |
43 | chr6:162765200-162766200 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
44 | chr6:162765200-162767000 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
45 | chr6:162765400-162765800 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
46 | chr6:162765400-162765800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
47 | chr6:162765400-162765800 | Enhancers | Adipose Nuclei | Adipose |
48 | chr6:162765400-162765800 | Enhancers | Fetal Brain Female | brain |
49 | chr6:162765400-162765800 | Enhancers | Fetal Muscle Trunk | muscle |
50 | chr6:162765400-162765800 | Weak transcription | HSMM | muscle |