Variant report

Variant	nsv1031586
Chromosome Location	chr6:162193559-162394864
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
2	chr6:162216587..162218691-chr6:162225101..162227602,2	K562	blood:
3	chr6:162211723..162213448-chr6:162215614..162217575,2	K562	blood:
4	chr6:162258117..162258784-chr6:162338530..162339165,2	MCF-7	breast:
5	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
6	chr6:162216587..162218691-chr6:162225101..162227602,2	K562	blood:
7	chr6:162274815..162277621-chr6:162282085..162283805,2	K562	blood:
8	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
9	chr6:162207547..162209957-chr6:162210445..162213994,3	K562	blood:
10	chr6:162307888..162309501-chr6:162310852..162312650,2	K562	blood:
11	chr6:162291697..162293198-chr6:162305600..162307370,2	K562	blood:
12	chr6:162313026..162315357-chr6:162317264..162319780,2	K562	blood:
13	chr6:162212614..162214396-chr6:162214709..162217609,2	MCF-7	breast:
14	chr6:162207547..162209957-chr6:162210445..162213994,3	K562	blood:
15	chr6:162291697..162293198-chr6:162305600..162307370,2	K562	blood:
16	chr6:162232298..162233805-chr6:162237071..162239613,2	K562	blood:
17	chr6:162372183..162373880-chr6:162375416..162378006,2	K562	blood:
18	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
19	chr6:162232298..162233805-chr6:162237071..162239613,2	K562	blood:
20	chr6:162258117..162258784-chr6:162338530..162339165,2	MCF-7	breast:
21	chr6:162347118..162349182-chr6:162351860..162355211,3	K562	blood:
22	chr6:162350457..162353351-chr6:162353923..162356207,2	K562	blood:
23	chr6:162307888..162309501-chr6:162310852..162312650,2	K562	blood:
24	chr6:162211723..162213448-chr6:162215614..162217575,2	K562	blood:
25	chr6:162380873..162382939-chr6:162388150..162390123,2	K562	blood:
26	chr6:162274815..162277621-chr6:162282085..162283805,2	K562	blood:
27	chr6:162313026..162315357-chr6:162317264..162319780,2	K562	blood:
28	chr6:162212614..162214396-chr6:162214709..162217609,2	MCF-7	breast:
29	chr6:162258059..162258779-chr6:162552660..162553528,2	MCF-7	breast:

No data

Extended variants
information (count: 8656 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:8656 , 50 per page) page: 1 2 3 4 5 6 7 ... 174

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs537501769	chr6:162193559-162193560	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs77369827	chr6:162193564-162193565	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs181735652	chr6:162193565-162193566	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs534524547	chr6:162193578-162193579	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs543711841	chr6:162193646-162193647	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs138754393	chr6:162193651-162193652	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs58242744	chr6:162193653-162193654	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs141951734	chr6:162193731-162193732	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs77067241	chr6:162193766-162193767	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs556441255	chr6:162193768-162193769	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs186960715	chr6:162193793-162193794	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs559825198	chr6:162193827-162193828	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs562143193	chr6:162193841-162193842	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs376850312	chr6:162193854-162193855	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs572095908	chr6:162193902-162193903	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs190404632	chr6:162193924-162193925	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs76170103	chr6:162193927-162193928	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs182227862	chr6:162193975-162193976	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs527475952	chr6:162194070-162194071	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs34570278	chr6:162194076-162194077	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs75735459	chr6:162194078-162194079	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs531455481	chr6:162194113-162194114	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs547954635	chr6:162194126-162194127	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs372342226	chr6:162194136-162194137	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs114023725	chr6:162194144-162194145	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs78127985	chr6:162194145-162194146	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs547370480	chr6:162194146-162194147	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs571172277	chr6:162194161-162194162	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs540104190	chr6:162194162-162194163	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs556741882	chr6:162194248-162194249	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs112282448	chr6:162194288-162194289	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs576541090	chr6:162194326-162194327	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs9456708	chr6:162194328-162194329	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs555572573	chr6:162194345-162194346	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs572152672	chr6:162194393-162194394	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs141761257	chr6:162194411-162194412	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs77408727	chr6:162194419-162194420	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs144525533	chr6:162194428-162194429	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs186019669	chr6:162194444-162194445	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs117899794	chr6:162194451-162194452	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs552283594	chr6:162194481-162194482	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs531389416	chr6:162194485-162194486	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs148481879	chr6:162194492-162194493	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs561770282	chr6:162194496-162194497	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs548813153	chr6:162194500-162194501	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs4084131	chr6:162194512-162194513	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs570434508	chr6:162194522-162194523	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs141301217	chr6:162194575-162194576	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs200765635	chr6:162194577-162194578	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs377129298	chr6:162194583-162194584	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
Renal cell carcinoma	18592004	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Developmental delay	21147756	CNVD
Chordoma	18071362	CNVD
Myelofibrosis	22110671	CNVD
Autism	22241247	CNVD
Breast cancer	16397240	CNVD
Atherosclerosis	21956041	CNVD
Maculopathy	20981449	CNVD
Retinoblastoma	22278416	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Ovarian cancer	20844748	CNVD
Uveal melanoma	20484589	CNVD
Glioblastoma multiforme	19435819	CNVD
Astrocytoma	16205629	CNVD
Parkinson disease	17160897	CNVD
Cancer	20164920	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	20838587	CNVD
Early-onset parkinson disease	21993715	CNVD
Glioblastoma	18772890	CNVD
Pancreatic cancer	20981101	CNVD
Autism	21360662	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Intellectual disability	22102821	CNVD
Parkinson disease	0	CNVD
Bipolar disorder	19114987	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:870 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:162186600-162195000	Weak transcription	Brain Germinal Matrix	brain
2	chr6:162191600-162209200	Weak transcription	Aorta	Aorta
3	chr6:162192600-162194600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:162192800-162195000	Enhancers	Fetal Lung	lung
5	chr6:162193400-162193600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:162193400-162193800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:162193600-162194600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:162193800-162195000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:162194200-162195000	Enhancers	Fetal Brain Female	brain
10	chr6:162194400-162194800	Enhancers	Brain Substantia Nigra	brain
11	chr6:162194600-162194800	Enhancers	Brain Hippocampus Middle	brain
12	chr6:162194600-162195000	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr6:162194600-162195600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:162194600-162195600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:162194800-162195000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:162194800-162195000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:162194800-162195000	Active TSS	Colon Smooth Muscle	Colon
18	chr6:162194800-162195200	Enhancers	Primary hematopoietic stem cells	blood
19	chr6:162194800-162195200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr6:162194800-162195400	Active TSS	Brain Angular Gyrus	brain
21	chr6:162194800-162195400	Active TSS	Stomach Smooth Muscle	stomach
22	chr6:162194800-162195600	Enhancers	Adipose Nuclei	Adipose
23	chr6:162194800-162195600	Flanking Active TSS	Brain Substantia Nigra	brain
24	chr6:162194800-162195600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:162194800-162195600	Enhancers	Rectal Smooth Muscle	rectum
26	chr6:162194800-162195800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:162194800-162195800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:162194800-162195800	Flanking Active TSS	Brain Hippocampus Middle	brain
29	chr6:162194800-162195800	Enhancers	Fetal Heart	heart
30	chr6:162194800-162195800	Enhancers	Fetal Kidney	kidney
31	chr6:162194800-162195800	Enhancers	Ovary	ovary
32	chr6:162194800-162196200	Enhancers	Fetal Brain Male	brain
33	chr6:162194800-162196200	Enhancers	Fetal Stomach	stomach
34	chr6:162195000-162195200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr6:162195000-162195200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:162195000-162195200	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr6:162195000-162195400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr6:162195000-162195400	Active TSS	Brain Anterior Caudate	brain
39	chr6:162195000-162195400	Active TSS	Brain Cingulate Gyrus	brain
40	chr6:162195000-162195400	Flanking Active TSS	Brain Germinal Matrix	brain
41	chr6:162195000-162195400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
42	chr6:162195000-162195400	Flanking Active TSS	Fetal Brain Female	brain
43	chr6:162195000-162195600	Enhancers	Gastric	stomach
44	chr6:162195000-162195600	Enhancers	Spleen	Spleen
45	chr6:162195000-162195800	Flanking Active TSS	Fetal Lung	lung
46	chr6:162195000-162195800	Enhancers	Fetal Muscle Leg	muscle
47	chr6:162195000-162195800	Enhancers	Left Ventricle	heart
48	chr6:162195000-162195800	Enhancers	Right Atrium	heart
49	chr6:162195200-162195400	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr6:162195200-162195600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links