Variant report

Variant	nsv1031882
Chromosome Location	chr6:167625330-167795901
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2675)
CpG islands
(count:4828)
Chromatin interactive
region (count:32)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2675 , 50 per page) page: 1 2 3 4 5 6 7 ... 54

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:167632046-167632420	HepG2	liver:	n/a	n/a
2	ARID3A	chr6:167704338-167705733	HepG2	liver:	n/a	n/a
3	ARID3A	chr6:167637599-167638030	HepG2	liver:	n/a	n/a
4	ARID3A	chr6:167754780-167756165	HepG2	liver:	n/a	n/a
5	ARID3A	chr6:167629887-167630151	HepG2	liver:	n/a	n/a
6	ARID3A	chr6:167762709-167763005	HepG2	liver:	n/a	n/a
7	ARID3A	chr6:167655013-167655211	HepG2	liver:	n/a	n/a
8	ARID3A	chr6:167633428-167633974	HepG2	liver:	n/a	n/a
9	ARID3A	chr6:167628930-167629130	HepG2	liver:	n/a	n/a
10	ARID3A	chr6:167702230-167702578	HepG2	liver:	n/a	n/a
11	ARID3A	chr6:167722138-167722657	HepG2	liver:	n/a	n/a
12	ARID3A	chr6:167699867-167700232	HepG2	liver:	n/a	n/a
13	ARID3A	chr6:167652605-167653007	HepG2	liver:	n/a	n/a
14	ARID3A	chr6:167682223-167682912	HepG2	liver:	n/a	n/a
15	ARID3A	chr6:167629415-167629646	HepG2	liver:	n/a	n/a
16	ARID3A	chr6:167645950-167646149	HepG2	liver:	n/a	n/a
17	ARID3A	chr6:167651727-167651738	HepG2	liver:	n/a	n/a
18	ARID3A	chr6:167723215-167724601	HepG2	liver:	n/a	n/a
19	ATF1	chr6:167702337-167702425	K562	blood:	n/a	n/a
20	ATF1	chr6:167727339-167727444	K562	blood:	n/a	n/a
21	ATF2	chr6:167764830-167765266	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr6:167625939-167626508	GM12878	blood:	n/a	n/a
23	ATF2	chr6:167651500-167652487	H1-hESC	embryonic stem cell:	n/a	n/a
24	ATF2	chr6:167641333-167641936	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF2	chr6:167764810-167765270	H1-hESC	embryonic stem cell:	n/a	n/a
26	ATF2	chr6:167626020-167626431	GM12878	blood:	n/a	n/a
27	ATF2	chr6:167641353-167641826	H1-hESC	embryonic stem cell:	n/a	n/a
28	BACH1	chr6:167764960-167765154	H1-hESC	embryonic stem cell:	n/a	n/a
29	BACH1	chr6:167637370-167637829	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr6:167754224-167754403	H1-hESC	embryonic stem cell:	n/a	n/a
31	BACH1	chr6:167702257-167702472	H1-hESC	embryonic stem cell:	n/a	n/a
32	BACH1	chr6:167641591-167641850	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr6:167631950-167632087	H1-hESC	embryonic stem cell:	n/a	n/a
34	BATF	chr6:167765430-167765771	GM12878	blood:	n/a	n/a
35	BATF	chr6:167726053-167726251	GM12878	blood:	n/a	n/a
36	BATF	chr6:167764807-167765183	GM12878	blood:	n/a	n/a
37	BATF	chr6:167631870-167632155	GM12878	blood:	n/a	n/a
38	BATF	chr6:167625794-167626502	GM12878	blood:	n/a	n/a
39	BATF	chr6:167726056-167726329	GM12878	blood:	n/a	n/a
40	BATF	chr6:167785311-167785621	GM12878	blood:	n/a	n/a
41	BATF	chr6:167765440-167765736	GM12878	blood:	n/a	n/a
42	BATF	chr6:167625959-167626402	GM12878	blood:	n/a	n/a
43	BATF	chr6:167702166-167702414	GM12878	blood:	n/a	n/a
44	BCL11A	chr6:167626130-167626424	GM12878	blood:	n/a	n/a
45	BCL3	chr6:167710341-167710705	GM12878	blood:	n/a	n/a
46	BCLAF1	chr6:167764829-167765189	GM12878	blood:	n/a	chr6:167764879-167764888 chr6:167765036-167765044
47	BHLHE40	chr6:167691769-167691891	K562	blood:	n/a	chr6:167691854-167691867
48	BHLHE40	chr6:167702270-167702451	K562	blood:	n/a	n/a
49	BHLHE40	chr6:167755635-167755964	HepG2	liver:	n/a	n/a
50	BHLHE40	chr6:167631891-167632258	HepG2	liver:	n/a	n/a

(count:4828 , 50 per page) page: 1 2 3 4 5 6 7 ... 97

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:167653982-167654032	GM12891	blood:	n/a
2	chr6:167704188-167704238	HCPEpiC	choroid plexus:	n/a
3	chr6:167717313-167717363	SK-N-SH_RA	brain:	n/a
4	chr6:167655053-167655103	NB4	blood:	n/a
5	chr6:167695026-167695076	U87	brain:	n/a
6	chr6:167705253-167705303	ECC-1	luminal epithelium:	n/a
7	chr6:167765110-167765160	Hepatocyte	liver:	n/a
8	chr6:167649256-167649306	SK-N-SH	brain:	n/a
9	chr6:167762783-167762833	Jurkat	blood:	n/a
10	chr6:167653982-167654032	GM12891	blood:	n/a
11	chr6:167704188-167704238	HCPEpiC	choroid plexus:	n/a
12	chr6:167717313-167717363	SK-N-SH_RA	brain:	n/a
13	chr6:167655053-167655103	NB4	blood:	n/a
14	chr6:167695026-167695076	U87	brain:	n/a
15	chr6:167705253-167705303	ECC-1	luminal epithelium:	n/a
16	chr6:167765110-167765160	Hepatocyte	liver:	n/a
17	chr6:167649256-167649306	SK-N-SH	brain:	n/a
18	chr6:167762783-167762833	Jurkat	blood:	n/a
19	chr6:167649539-167649589	U87	brain:	n/a
20	chr6:167717196-167717246	HRPEpiC	eye:	n/a
21	chr6:167653957-167654007	NH-A	brain:	n/a
22	chr6:167649539-167649589	HepG2	liver:	n/a
23	chr6:167709720-167709770	PrEC	prostate:	n/a
24	chr6:167786059-167786109	MCF10A-Er-Src	breast:	n/a
25	chr6:167633955-167634005	GM12878	blood:	n/a
26	chr6:167791024-167791074	Jurkat	blood:	n/a
27	chr6:167704808-167704858	HPAEpiC	pulmonary alveolar:	n/a
28	chr6:167703591-167703641	AoSMC	blood vessel:	n/a
29	chr6:167705750-167705800	MCF10A-Er-Src	breast:	n/a
30	chr6:167653907-167653957	RPTEC	kidney:	n/a
31	chr6:167700000-167700050	Hela-S3	cervix:	n/a
32	chr6:167634139-167634189	HEK293	kidney:	embryo
33	chr6:167709237-167709287	U87	brain:	n/a
34	chr6:167703894-167703944	ECC-1	luminal epithelium:	n/a
35	chr6:167717196-167717246	SAEC	small airway:	n/a
36	chr6:167637331-167637381	NH-A	brain:	n/a
37	chr6:167655290-167655340	GM12891	blood:	n/a
38	chr6:167761204-167761254	NH-A	brain:	n/a
39	chr6:167632873-167632923	SK-N-MC	brain:	n/a
40	chr6:167792181-167792231	MCF10A-Er-Src	breast:	n/a
41	chr6:167705253-167705303	HEEpiC	esophagus:	n/a
42	chr6:167791024-167791074	Hepatocyte	liver:	n/a
43	chr6:167649336-167649386	Hela-S3	cervix:	n/a
44	chr6:167710360-167710410	HEK293	kidney:	embryo
45	chr6:167764523-167764573	HPAEpiC	pulmonary alveolar:	n/a
46	chr6:167763975-167764025	HRCEpiC	kidney:	n/a
47	chr6:167738425-167738475	GM19239	blood:	n/a
48	chr6:167764620-167764670	NHDF-neo	bronchial:	n/a
49	chr6:167738592-167738642	BJ	skin:	n/a
50	chr6:167727700-167727750	HCF	heart:	n/a

(count:32 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:167187967..167188932-chr6:167764453..167765086,2	K562	blood:
2	chr6:167662535..167665478-chr6:167668701..167671430,2	K562	blood:
3	chr6:167715327..167717333-chr6:167717541..167719931,2	MCF-7	breast:
4	chr6:167623945..167626187-chr6:168297648..168300373,2	K562	blood:
5	chr6:167734899..167737753-chr6:167743376..167745822,2	MCF-7	breast:
6	chr6:167744023..167747282-chr6:167750789..167753119,3	K562	blood:
7	chr6:167615262..167616947-chr6:167733556..167735117,2	MCF-7	breast:
8	chr6:167662535..167665478-chr6:167668701..167671430,2	K562	blood:
9	chr6:167744023..167747282-chr6:167750789..167753119,3	K562	blood:
10	chr6:167631565..167632072-chr6:167702069..167702692,3	K562	blood:
11	chr6:167668192..167671777-chr6:167684157..167687082,3	K562	blood:
12	chr6:167662732..167663315-chr6:167819023..167819880,2	K562	blood:
13	chr6:167636874..167638495-chr6:167694115..167696567,2	K562	blood:
14	chr6:167631751..167632287-chr6:167701939..167702527,2	MCF-7	breast:
15	chr6:167734899..167737753-chr6:167743376..167745822,2	MCF-7	breast:
16	chr6:167620399..167623068-chr6:167623897..167626646,2	K562	blood:
17	chr6:167623779..167626117-chr6:167629928..167632260,2	MCF-7	breast:
18	chr6:167702039..167702568-chr6:167764606..167765474,2	MCF-7	breast:
19	chr6:167736614..167738249-chr6:167740426..167742938,2	K562	blood:
20	chr6:167702039..167702568-chr6:167764606..167765474,2	MCF-7	breast:
21	chr6:167703616..167705764-chr6:167717598..167719278,2	MCF-7	breast:
22	chr6:167623779..167626117-chr6:167629928..167632260,2	MCF-7	breast:
23	chr6:167669951..167671777-chr6:167683631..167687000,3	K562	blood:
24	chr6:167743283..167745523-chr6:167751106..167753120,2	K562	blood:
25	chr6:167743283..167745523-chr6:167751106..167753120,2	K562	blood:
26	chr6:167736614..167738249-chr6:167740426..167742938,2	K562	blood:
27	chr6:167631565..167632072-chr6:167702069..167702692,3	K562	blood:
28	chr6:167699179..167702166-chr6:167703091..167705361,2	K562	blood:
29	chr6:167631751..167632287-chr6:167701939..167702527,2	MCF-7	breast:
30	chr6:167636874..167638495-chr6:167694115..167696567,2	K562	blood:
31	chr1:28836187..28837925-chr6:167694572..167696254,2	K562	blood:
32	chr6:167715327..167717333-chr6:167717541..167719931,2	MCF-7	breast:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCP10-1	chr6:167787839-167789289	NONHSAT116097
2	lnc-UNC93A-1	chr6:167655379-167655453	XLOC_005540
3	lnc-UNC93A-3	chr6:167764293-167764966	NONHSAT116095
4	lnc-UNC93A-2	chr6:167760960-167761541	NONHSAT116094
5	lnc-GPR31-1	chr6:167653636-167653833	XLOC_005921
6	lnc-UNC93A-1	chr6:167659275-167659404	XLOC_005540
7	lnc-GPR31-1	chr6:167650996-167651293	XLOC_005921
8	lnc-GPR31-1	chr6:167653688-167653968	XLOC_005921
9	lnc-GPR31-1	chr6:167651156-167651293	XLOC_005921
10	lnc-TCP10-1	chr6:167786578-167786848	NONHSAT116097
11	lnc-UNC93A-3	chr6:167764976-167765446	NONHSAT116095

No data

Variant related genes	Relation type
UNC93A	TF binding region
TCP10	TF binding region
ENSG00000228648	TF binding region
TTLL2	TF binding region
ENSG00000231720	TF binding region
ENSG00000216966	TF binding region
ENSG00000217447	TF binding region
UNC93A	CpG island
TCP10	CpG island
ENSG00000228648	CpG island
TTLL2	CpG island
ENSG00000231720	CpG island
ENSG00000216966	CpG island
ENSG00000217447	CpG island
ENSG00000112494	chromatin interactions
ENSG00000180198	chromatin interactions
ENSG00000216966	chromatin interactions
CYBASC3	miRNA target sites
CYB5R4	miRNA target sites

Extended variants
information (count: 8169 )
Associated
traits (count: 86 )

Variant overlapped rSNPs/rCNVs (count:8169 , 50 per page) page: 1 2 3 4 5 6 7 ... 164

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9366106	chr6:167625330-167625331	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs533611623	chr6:167625334-167625335	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs536052172	chr6:167625354-167625355	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs551884784	chr6:167625358-167625359	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs146977264	chr6:167625392-167625393	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs550952841	chr6:167625406-167625407	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs549405966	chr6:167625430-167625431	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs189371775	chr6:167625432-167625433	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs554118268	chr6:167625452-167625453	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs576869887	chr6:167625457-167625458	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs557082426	chr6:167625483-167625484	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs568942578	chr6:167625491-167625492	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs539276954	chr6:167625496-167625497	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs148016236	chr6:167625512-167625513	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs533498326	chr6:167625544-167625545	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs375289182	chr6:167625548-167625549	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs574241390	chr6:167625557-167625558	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs531476227	chr6:167625562-167625563	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs141676565	chr6:167625569-167625570	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs150521812	chr6:167625609-167625610	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs578217586	chr6:167625611-167625612	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs59317722	chr6:167625638-167625639	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs111801090	chr6:167625653-167625654	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs527786865	chr6:167625654-167625655	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs180851399	chr6:167625676-167625677	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs112867611	chr6:167625692-167625693	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs563287393	chr6:167625706-167625707	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs572396275	chr6:167625711-167625712	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs531764943	chr6:167625741-167625742	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs550577939	chr6:167625778-167625779	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs569180162	chr6:167625805-167625806	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs539238965	chr6:167625822-167625823	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs551165860	chr6:167625827-167625828	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs146383816	chr6:167625829-167625830	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs186551713	chr6:167625832-167625833	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs148696182	chr6:167625854-167625855	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs533658666	chr6:167625861-167625862	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs6900849	chr6:167625869-167625870	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
39	rs9366107	chr6:167625890-167625891	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs537895059	chr6:167625895-167625896	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs562214680	chr6:167625922-167625923	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs112245564	chr6:167625951-167625952	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs115558751	chr6:167625966-167625967	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs545568846	chr6:167626035-167626036	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs2183930	chr6:167626037-167626038	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs572536970	chr6:167626041-167626042	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs2183929	chr6:167626044-167626045	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs189384882	chr6:167626045-167626046	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs139747004	chr6:167626089-167626090	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs550188962	chr6:167626094-167626095	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:86)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16272173	CNVD
Ependymoma	16718352	CNVD
Gastric cancer	17908304	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16272173	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	17603634	CNVD
Developmental delay	19490664	CNVD
Burkitt''s lymphoma	18698080	CNVD
Neurodevelopmental disorder	22521361	CNVD
small cell lung cancer	20016488	CNVD
Adenoid cystic carcinoma	18698036	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Leukemia	18688285	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Burkitt''s lymphoma	19759907	CNVD
Esophageal cancer	21851588	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Breast cancer	17133270	CNVD
Testicular germ cell tumor	18059402	CNVD
Chordoma	18071362	CNVD
Glioblastoma multiforme	19435819	CNVD
Developmental delay	21147756	CNVD
Ovarian cancer	21720365	CNVD
abnormal development	18461090	CNVD
Epilepsy	22083797	CNVD
Myelofibrosis	22110671	CNVD
chordoma	19801981	CNVD
Myxofibrosarcoma	16751306	CNVD
Autism	17483303	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute myeloid leukemia	19651601	CNVD
Sudden cardiac death	19188705	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164919	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:1754 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167615800-167628800	Weak transcription	Right Atrium	heart
2	chr6:167622400-167626600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr6:167622400-167627200	Enhancers	HepG2	liver
4	chr6:167623000-167629200	Enhancers	Fetal Brain Male	brain
5	chr6:167623600-167628200	Enhancers	Fetal Brain Female	brain
6	chr6:167624200-167625600	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:167624400-167625800	Enhancers	Colon Smooth Muscle	Colon
8	chr6:167624600-167632800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:167624800-167627800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:167625600-167630000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:167625800-167626000	Enhancers	Lung	lung
12	chr6:167625800-167626000	Bivalent Enhancer	GM12878-XiMat	blood
13	chr6:167625800-167626200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:167626000-167626200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr6:167626000-167626800	Enhancers	GM12878-XiMat	blood
16	chr6:167626200-167627800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:167626200-167635000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:167626600-167631000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:167626800-167627600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:167627200-167627600	Weak transcription	HepG2	liver
21	chr6:167627400-167628000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr6:167627600-167628000	Enhancers	Brain Cingulate Gyrus	brain
23	chr6:167627600-167629000	Enhancers	HepG2	liver
24	chr6:167627800-167628000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:167627800-167628000	Enhancers	Brain Substantia Nigra	brain
26	chr6:167627800-167628200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:167627800-167628200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:167627800-167628200	Bivalent Enhancer	Brain Anterior Caudate	brain
29	chr6:167627800-167628200	Enhancers	Brain Germinal Matrix	brain
30	chr6:167627800-167628200	Bivalent Enhancer	Brain Hippocampus Middle	brain
31	chr6:167627800-167628200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr6:167628000-167628200	Bivalent Enhancer	Brain Substantia Nigra	brain
33	chr6:167628000-167630400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr6:167628200-167637200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:167628200-167638600	Weak transcription	Fetal Brain Female	brain
36	chr6:167628800-167630400	Enhancers	Fetal Intestine Large	intestine
37	chr6:167629000-167629400	Flanking Active TSS	HepG2	liver
38	chr6:167629000-167630000	Enhancers	Fetal Intestine Small	intestine
39	chr6:167629000-167630400	Enhancers	Stomach Mucosa	stomach
40	chr6:167629000-167632400	Enhancers	Liver	Liver
41	chr6:167629200-167632200	Weak transcription	Fetal Brain Male	brain
42	chr6:167629400-167630000	Active TSS	HepG2	liver
43	chr6:167630000-167630200	Enhancers	Rectal Smooth Muscle	rectum
44	chr6:167630000-167630400	Flanking Active TSS	HepG2	liver
45	chr6:167630000-167635000	Weak transcription	Fetal Intestine Small	intestine
46	chr6:167630400-167632200	Weak transcription	Fetal Intestine Large	intestine
47	chr6:167630400-167633400	Enhancers	HepG2	liver
48	chr6:167630400-167637200	Weak transcription	Stomach Mucosa	stomach
49	chr6:167631000-167631600	Enhancers	Placenta Amnion	Placenta Amnion
50	chr6:167631600-167631800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links