Variant report

Variant	nsv1032149
Chromosome Location	chr6:1848148-2006021
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1211)
CpG islands
(count:855)
Chromatin interactive
region (count:58)
LncRNA
region (count:128)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1211 , 50 per page) page: 1 2 3 4 5 6 7 ... 25

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr6:1982164-1982168	HepG2	liver:	n/a	n/a
2	ATF1	chr6:1901867-1902183	K562	blood:	n/a	n/a
3	ATF1	chr6:1878613-1879176	K562	blood:	n/a	n/a
4	ATF2	chr6:1869133-1869524	GM12878	blood:	n/a	n/a
5	BACH1	chr6:1872963-1873216	H1-hESC	embryonic stem cell:	n/a	n/a
6	BATF	chr6:1927285-1927683	GM12878	blood:	n/a	n/a
7	BCL3	chr6:1881868-1882170	GM12878	blood:	n/a	n/a
8	BCL3	chr6:1942004-1942404	GM12878	blood:	n/a	chr6:1942039-1942047
9	BHLHE40	chr6:1890392-1890690	GM12878	blood:	n/a	n/a
10	BHLHE40	chr6:1856601-1856945	GM12878	blood:	n/a	n/a
11	BHLHE40	chr6:1940816-1940864	GM12878	blood:	n/a	n/a
12	BHLHE40	chr6:1904199-1904406	K562	blood:	n/a	chr6:1904318-1904327 chr6:1904318-1904327
13	BRCA1	chr6:1952824-1953560	Hela-S3	cervix:	n/a	n/a
14	CBX3	chr6:1952791-1953456	HCT-116	colon:	n/a	n/a
15	CEBPB	chr6:1973206-1973574	HepG2	liver:	n/a	chr6:1973400-1973411 chr6:1973350-1973361
16	CEBPB	chr6:1944955-1945134	Hela-S3	cervix:	n/a	chr6:1945071-1945082 chr6:1945072-1945083
17	CEBPB	chr6:1945812-1946020	H1-hESC	embryonic stem cell:	n/a	n/a
18	CEBPB	chr6:1940554-1941012	ECC-1	luminal epithelium:	n/a	n/a
19	CEBPB	chr6:1929661-1929962	IMR90	lung:	n/a	chr6:1929769-1929780
20	CEBPB	chr6:1929694-1929943	A549	lung:	n/a	chr6:1929769-1929780
21	CEBPB	chr6:1929672-1929953	HepG2	liver:	n/a	chr6:1929769-1929780
22	CEBPB	chr6:1949907-1950266	HepG2	liver:	n/a	chr6:1950099-1950110
23	CEBPB	chr6:1944922-1945253	K562	blood:	n/a	chr6:1945071-1945082 chr6:1945072-1945083
24	CEBPB	chr6:1872880-1873700	IMR90	lung:	n/a	chr6:1873484-1873501
25	CEBPB	chr6:1973240-1973440	H1-hESC	embryonic stem cell:	n/a	chr6:1973400-1973411 chr6:1973350-1973361
26	CEBPB	chr6:1911798-1912049	IMR90	lung:	n/a	n/a
27	CEBPB	chr6:1949983-1950175	A549	lung:	n/a	chr6:1950099-1950110
28	CEBPB	chr6:1973311-1973530	K562	blood:	n/a	chr6:1973400-1973411 chr6:1973350-1973361
29	CEBPB	chr6:1973267-1973496	A549	lung:	n/a	chr6:1973400-1973411 chr6:1973350-1973361
30	CEBPB	chr6:1993383-1993750	IMR90	lung:	n/a	n/a
31	CEBPB	chr6:1940502-1941063	ECC-1	luminal epithelium:	n/a	chr6:1940506-1940519
32	CEBPB	chr6:1952816-1953439	IMR90	lung:	n/a	n/a
33	CEBPB	chr6:1949462-1950279	Hela-S3	cervix:	n/a	chr6:1949680-1949693 chr6:1949677-1949694 chr6:1950099-1950110 chr6:1950261-1950272
34	CEBPB	chr6:1923869-1924069	HepG2	liver:	n/a	chr6:1923977-1923988
35	CEBPB	chr6:1869296-1869440	H1-hESC	embryonic stem cell:	n/a	n/a
36	CEBPB	chr6:1973235-1973539	IMR90	lung:	n/a	chr6:1973400-1973411 chr6:1973350-1973361
37	CEBPB	chr6:1973230-1973567	Hela-S3	cervix:	n/a	chr6:1973400-1973411 chr6:1973350-1973361
38	CEBPB	chr6:1944940-1945213	A549	lung:	n/a	chr6:1945071-1945082 chr6:1945072-1945083
39	CEBPB	chr6:1854688-1854821	HepG2	liver:	n/a	n/a
40	CEBPB	chr6:1861475-1861609	HepG2	liver:	n/a	n/a
41	CEBPB	chr6:1917901-1918386	Hela-S3	cervix:	n/a	n/a
42	CEBPB	chr6:1953069-1953376	A549	lung:	n/a	n/a
43	CEBPB	chr6:1973274-1973465	HepG2	liver:	n/a	chr6:1973400-1973411 chr6:1973350-1973361
44	CEBPB	chr6:1949811-1950265	IMR90	lung:	n/a	chr6:1950099-1950110
45	CEBPB	chr6:1952949-1953457	Hela-S3	cervix:	n/a	n/a
46	CEBPB	chr6:1901869-1902242	IMR90	lung:	n/a	n/a
47	CEBPB	chr6:1944919-1945247	HepG2	liver:	n/a	chr6:1945071-1945082 chr6:1945072-1945083
48	CEBPB	chr6:1944912-1945241	IMR90	lung:	n/a	chr6:1945071-1945082 chr6:1945072-1945083
49	CEBPB	chr6:1945540-1945684	HepG2	liver:	n/a	n/a
50	CEBPB	chr6:1873440-1873639	K562	blood:	n/a	chr6:1873484-1873501

(count:855 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:1901423-1901473	Jurkat	blood:	n/a
2	chr6:1901423-1901473	Jurkat	blood:	n/a
3	chr6:1994056-1994106	HIPEpiC	eye:	n/a
4	chr6:1873540-1873590	HPAEpiC	pulmonary alveolar:	n/a
5	chr6:1901423-1901473	HIPEpiC	eye:	n/a
6	chr6:1873540-1873590	PFSK-1	brain:	n/a
7	chr6:1871551-1871601	CMK	blood:	n/a
8	chr6:1896512-1896562	Caco-2	colon:	n/a
9	chr6:1901298-1901348	AG10803	skin:	n/a
10	chr6:2001134-2001184	RPTEC	kidney:	n/a
11	chr6:1909853-1909903	GM12891	blood:	n/a
12	chr6:1970710-1970760	SK-N-SH_RA	brain:	n/a
13	chr6:1901298-1901348	HEK293	kidney:	embryo
14	chr6:1901423-1901473	HEEpiC	esophagus:	n/a
15	chr6:1953086-1953136	NB4	blood:	n/a
16	chr6:1901423-1901473	SK-N-SH	brain:	n/a
17	chr6:1987269-1987319	HPAEpiC	pulmonary alveolar:	n/a
18	chr6:1994056-1994106	HepG2	liver:	n/a
19	chr6:1994056-1994106	GM12891	blood:	n/a
20	chr6:2001134-2001184	HIPEpiC	eye:	n/a
21	chr6:1917931-1917981	U87	brain:	n/a
22	chr6:1909853-1909903	NT2-D1	testis:	n/a
23	chr6:1901298-1901348	HIPEpiC	eye:	n/a
24	chr6:1873540-1873590	BE2_C	brain:	n/a
25	chr6:1901298-1901348	K562	blood:	n/a
26	chr6:1917931-1917981	BE2_C	brain:	n/a
27	chr6:1953086-1953136	AoSMC	blood vessel:	n/a
28	chr6:1873540-1873590	IMR90	lung:	fetal
29	chr6:1994056-1994106	MCF10A-Er-Src	breast:	n/a
30	chr6:1987269-1987319	Hepatocyte	liver:	n/a
31	chr6:1873540-1873590	AoSMC	blood vessel:	n/a
32	chr6:2001134-2001184	HCF	heart:	n/a
33	chr6:2001134-2001184	H1-hESC	embryonic stem cell:	embryo
34	chr6:1994056-1994106	PFSK-1	brain:	n/a
35	chr6:1970710-1970760	Jurkat	blood:	n/a
36	chr6:1930446-1930496	Hepatocyte	liver:	n/a
37	chr6:1994056-1994106	SK-N-SH	brain:	n/a
38	chr6:1909853-1909903	ECC-1	luminal epithelium:	n/a
39	chr6:1930446-1930496	HRPEpiC	eye:	n/a
40	chr6:1994056-1994106	RPTEC	kidney:	n/a
41	chr6:1930446-1930496	HUVEC	blood vessel:	n/a
42	chr6:2001134-2001184	HCM	heart:	n/a
43	chr6:1871551-1871601	RPTEC	kidney:	n/a
44	chr6:1909853-1909903	Jurkat	blood:	n/a
45	chr6:1896512-1896562	PANC-1	pancreas:	n/a
46	chr6:1873540-1873590	HAEpiC	amniotic membrane:	n/a
47	chr6:1994056-1994106	HCT-116	colon:	n/a
48	chr6:1901298-1901348	CMK	blood:	n/a
49	chr6:1930446-1930496	PrEC	prostate:	n/a
50	chr6:1953086-1953136	MCF-7	breast:	n/a

(count:58 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:1892981..1894808-chr6:1898634..1901101,2	K562	blood:
2	chr6:1845499..1849284-chr6:1851999..1854046,3	K562	blood:
3	chr6:1901619..1903388-chr6:1908460..1910593,2	MCF-7	breast:
4	chr6:1995618..1998504-chr6:2001883..2003856,2	MCF-7	breast:
5	chr6:1964049..1966917-chr6:1973161..1976024,2	MCF-7	breast:
6	chr6:1892981..1894808-chr6:1898634..1901101,2	K562	blood:
7	chr6:1861369..1863684-chr6:1864416..1866242,2	K562	blood:
8	chr6:1641666..1642175-chr6:1997946..1998735,2	MCF-7	breast:
9	chr6:1941619..1944152-chr6:2244261..2246273,2	MCF-7	breast:
10	chr6:2005493..2008020-chr6:2019551..2022122,2	K562	blood:
11	chr6:1996917..1999046-chr6:2003121..2005556,2	MCF-7	breast:
12	chr6:1839372..1842046-chr6:1850595..1852706,2	MCF-7	breast:
13	chr6:1940855..1943499-chr6:1944442..1946843,2	MCF-7	breast:
14	chr6:1918511..1920955-chr6:1921418..1923384,2	K562	blood:
15	chr6:1858177..1860635-chr6:1865077..1867804,2	MCF-7	breast:
16	chr6:1860563..1862869-chr6:1864416..1866746,2	K562	blood:
17	chr6:1993624..1996051-chr6:2001806..2003962,2	MCF-7	breast:
18	chr6:1868113..1870293-chr6:1878428..1880757,2	MCF-7	breast:
19	chr6:1879945..1882331-chr6:1886412..1889066,2	K562	blood:
20	chr6:1858177..1860635-chr6:1865077..1867804,2	MCF-7	breast:
21	chr6:1948965..1951899-chr6:1951907..1953697,2	MCF-7	breast:
22	chr6:1893216..1895870-chr6:1897285..1899194,2	MCF-7	breast:
23	chr6:1612582..1614145-chr6:1846859..1849142,2	MCF-7	breast:
24	chr6:1893216..1895870-chr6:1897285..1899194,2	MCF-7	breast:
25	chr6:1856826..1858830-chr6:1861067..1863033,2	MCF-7	breast:
26	chr6:1961516..1963757-chr6:1966305..1967942,2	MCF-7	breast:
27	chr6:1868113..1870293-chr6:1878428..1880757,2	MCF-7	breast:
28	chr6:1964426..1965970-chr6:1968700..1971465,2	K562	blood:
29	chr6:1909308..1911195-chr6:1919277..1921722,2	K562	blood:
30	chr6:1909308..1911195-chr6:1919277..1921722,2	K562	blood:
31	chr6:1993624..1996051-chr6:2001806..2003962,2	MCF-7	breast:
32	chr6:1876778..1878814-chr6:1880634..1882553,2	K562	blood:
33	chr6:1964426..1965970-chr6:1968700..1971465,2	K562	blood:
34	chr6:1856826..1858830-chr6:1861067..1863033,2	MCF-7	breast:
35	chr6:1609450..1612431-chr6:1929248..1931252,2	MCF-7	breast:
36	chr6:1918511..1920955-chr6:1921418..1923384,2	K562	blood:
37	chr6:1608996..1611183-chr6:1948987..1951585,2	MCF-7	breast:
38	chr6:1964049..1966917-chr6:1973161..1976024,2	MCF-7	breast:
39	chr6:1687705..1689318-chr6:1909899..1912443,2	K562	blood:
40	chr6:1861369..1863684-chr6:1864416..1866242,2	K562	blood:
41	chr6:1901619..1903388-chr6:1908460..1910593,2	MCF-7	breast:
42	chr6:1940855..1943499-chr6:1944442..1946843,2	MCF-7	breast:
43	chr6:1876778..1878814-chr6:1880634..1882553,2	K562	blood:
44	chr6:1961516..1963757-chr6:1966305..1967942,2	MCF-7	breast:
45	chr6:1948965..1951899-chr6:1951907..1953697,2	MCF-7	breast:
46	chr6:1833159..1835523-chr6:1854062..1855942,2	K562	blood:
47	chr6:1608691..1612262-chr6:1889207..1891694,3	MCF-7	breast:
48	chr6:1843508..1846277-chr6:1850765..1853357,2	MCF-7	breast:
49	chr6:1608029..1610545-chr6:1915416..1919377,4	MCF-7	breast:
50	chr6:1995618..1998504-chr6:2001883..2003856,2	MCF-7	breast:

(count:128 , 50 per page) page: 1 2 3

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXC1-11	chr6:1991811-1991882	NONHSAT106574
2	lnc-C6orf195-32	chr6:1934075-1934415	NONHSAT106564
3	lnc-FOXC1-10	chr6:1940434-1940479	NONHSAT106561
4	lnc-C6orf195-31	chr6:1948760-1949249	NONHSAT106569
5	lnc-FOXC1-11	chr6:1976469-1976625	NONHSAT106574
6	lnc-FOXC1-11	chr6:1991811-1991882	NONHSAT106575
7	lnc-FOXC1-9	chr6:1889051-1889142	NONHSAT106556
8	lnc-C6orf195-25	chr6:1988509-1988849	NONHSAT106582
9	lnc-FOXC1-9	chr6:1888535-1888595	NONHSAT106553
10	lnc-FOXC1-9	chr6:1887520-1887676	NONHSAT106552
11	lnc-FOXC1-11	chr6:1977962-1978063	NONHSAT106575
12	lnc-FOXC1-9	chr6:1888716-1888829	NONHSAT106554
13	lnc-FOXC1-11	chr6:1977665-1977778	NONHSAT106575
14	lnc-FOXC1-11	chr6:1976469-1976625	NONHSAT106576
15	lnc-FOXC1-9	chr6:1888320-1888411	NONHSAT106553
16	lnc-FOXC1-9	chr6:1889266-1889326	NONHSAT106555
17	lnc-FOXC1-9	chr6:1889744-1889845	NONHSAT106556
18	lnc-FOXC1-10	chr6:1928088-1928201	NONHSAT106561
19	lnc-FOXC1-11	chr6:1992403-1992646	NONHSAT106576
20	lnc-FOXC1-10	chr6:1927907-1927967	NONHSAT106561
21	lnc-FOXC1-9	chr6:1904182-1906085	NONHSAT106555
22	lnc-FOXC1-10	chr6:1927516-1927576	NONHSAT106561
23	lnc-FOXC1-9	chr6:1888716-1888829	NONHSAT106552
24	lnc-FOXC1-11	chr6:1977484-1977544	NONHSAT106576
25	lnc-C6orf195-27	chr6:1971122-1971355	NONHSAT106573
26	lnc-FOXC1-9	chr6:1902860-1902931	NONHSAT106552
27	lnc-FOXC1-11	chr6:1992403-1994306	NONHSAT106575
28	lnc-FOXC1-9	chr6:1888535-1888595	NONHSAT106552
29	lnc-FOXC1-9	chr6:1901219-1901287	NONHSAT106554
30	lnc-FOXC1-9	chr6:1901061-1901106	NONHSAT106554
31	lnc-FOXC1-11	chr6:1991811-1991882	NONHSAT106576
32	lnc-FOXC1-9	chr6:1904182-1904425	NONHSAT106556
33	lnc-C6orf195-28	chr6:1967473-1967962	NONHSAT106572
34	lnc-FOXC1-9	chr6:1888251-1888407	NONHSAT106556
35	lnc-FOXC1-9	chr6:1889051-1889142	NONHSAT106557
36	lnc-FOXC1-11	chr6:1977484-1977544	NONHSAT106575
37	lnc-FOXC1-10	chr6:1943309-1943369	NONHSAT106568
38	lnc-FOXC1-9	chr6:1901791-1901836	NONHSAT106557
39	lnc-FOXC1-11	chr6:1976469-1976625	NONHSAT106575
40	lnc-FOXC1-9	chr6:1903590-1903661	NONHSAT106557
41	lnc-FOXC1-9	chr6:1888320-1888411	NONHSAT106554
42	lnc-FOXC1-9	chr6:1889447-1889560	NONHSAT106556
43	lnc-FOXC1-9	chr6:1888144-1888204	NONHSAT106553
44	lnc-C6orf195-26	chr6:1979260-1979473	NONHSAT106577
45	lnc-FOXC1-11	chr6:1977093-1977153	NONHSAT106575
46	lnc-FOXC1-9	chr6:1903452-1903695	NONHSAT106552
47	lnc-FOXC1-11	chr6:1995530-1995609	NONHSAT106574
48	lnc-FOXC1-11	chr6:1977269-1977360	NONHSAT106575
49	lnc-C6orf195-29	chr6:1950463-1950696	NONHSAT106571
50	lnc-FOXC1-10	chr6:1961744-1961823	NONHSAT106568

No data

Variant related genes	Relation type
GMDS	TF binding region
GMDS	CpG island
ENSG00000250903	chromatin interactions
ENSG00000112699	chromatin interactions
ENSG00000054598	chromatin interactions

Extended variants
information (count: 6113 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:6113 , 50 per page) page: 1 2 3 4 5 6 7 ... 123

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs3778539	chr6:1848148-1848149	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs554542045	chr6:1848190-1848191	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs17771371	chr6:1848205-1848206	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs372741483	chr6:1848206-1848207	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs75512313	chr6:1848215-1848216	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs549397856	chr6:1848227-1848228	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs568407264	chr6:1848242-1848243	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs533832503	chr6:1848264-1848265	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs553961213	chr6:1848265-1848266	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs570576910	chr6:1848328-1848329	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs77046608	chr6:1848342-1848343	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs374025631	chr6:1848371-1848372	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs555850592	chr6:1848372-1848373	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs6596857	chr6:1848388-1848389	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs541469926	chr6:1848433-1848434	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs192741386	chr6:1848435-1848436	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs151235995	chr6:1848436-1848437	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs140534814	chr6:1848459-1848460	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs9503031	chr6:1848467-1848468	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs533374332	chr6:1848489-1848490	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs144257975	chr6:1848501-1848502	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs146588094	chr6:1848547-1848548	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs140339051	chr6:1848570-1848571	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs185129597	chr6:1848612-1848613	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs34127256	chr6:1848613-1848614	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs78614970	chr6:1848619-1848620	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs188958244	chr6:1848704-1848705	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs181868279	chr6:1848809-1848810	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs76239235	chr6:1848822-1848823	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs77702119	chr6:1848836-1848837	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs549316444	chr6:1848854-1848855	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs539259546	chr6:1848902-1848903	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs555936257	chr6:1848906-1848907	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs145496781	chr6:1848946-1848947	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs576470803	chr6:1848952-1848953	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs535163485	chr6:1848962-1848963	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs62388421	chr6:1849086-1849087	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs115442389	chr6:1849137-1849138	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs138039744	chr6:1849156-1849157	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs186429588	chr6:1849190-1849191	Weak transcription Enhancers Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs578195414	chr6:1849225-1849226	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs570272330	chr6:1849231-1849232	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs544072735	chr6:1849290-1849291	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs563859680	chr6:1849355-1849356	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs528946734	chr6:1849366-1849367	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs529439668	chr6:1849447-1849448	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs543165479	chr6:1849461-1849462	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs188095541	chr6:1849506-1849507	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs528487773	chr6:1849511-1849512	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs13197291	chr6:1849579-1849580	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Prader-willi syndrome	20588305	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Developmental delay	19490664	CNVD
Cancer	21183584	CNVD
Multiple Epiphyseal Dysplasia	20877625	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Glaucoma	18694899	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	17603634	CNVD
Cancer	20164920	CNVD
Colorectal cancer	21297112	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Follicular lymphoma	20505157	CNVD
Glioblastoma multiforme	21080181	CNVD
Ewing''s sarcoma	21437220	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Leukemia	21518781	CNVD
Cancer	21637783	CNVD
Facial dysmorphism	22105932	CNVD
Medulloblastoma	21979893	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Bladder cancer	19088036	CNVD
Wilms tumour	21544195	CNVD
Uveal melanoma	21693616	CNVD
Biliary cancer	19435499	CNVD
Malaria	21533027	CNVD
Retinoblastoma	19183342	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Prostate cancer	18632612	CNVD
Myelodysplastic syndrome	21251322	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Lung cancer	18438408	CNVD
Bladder cancer	21909424	CNVD
Multiple myeloma	17550852	CNVD
Ewing''s sarcoma	17952124	CNVD
Cancer	20164919	CNVD
Gastric cancer	16891809	CNVD
Ovarian cancer	21781307	CNVD
small cell lung cancer	20016488	CNVD
Autism	22495311	CNVD
Autism	21448237	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-small cell lung cancer	16651412	CNVD
Tetralogy of Fallot	22912587	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:1669 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1829800-1856600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:1833400-1856600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:1833600-1849600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:1838200-1862200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:1842200-1852200	Weak transcription	Thymus	Thymus
6	chr6:1842400-1850200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:1842800-1851000	Weak transcription	Pancreas	Pancrea
8	chr6:1842800-1872400	Weak transcription	Gastric	stomach
9	chr6:1845600-1861200	Weak transcription	Aorta	Aorta
10	chr6:1846200-1850200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:1846400-1848400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:1846400-1856800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:1846600-1850200	Weak transcription	Fetal Intestine Small	intestine
14	chr6:1847000-1849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:1847200-1849800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:1847800-1849600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:1848000-1848600	Strong transcription	HepG2	liver
18	chr6:1848400-1849200	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:1848600-1856800	Weak transcription	HepG2	liver
20	chr6:1849000-1849400	Enhancers	Fetal Thymus	thymus
21	chr6:1849200-1850200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:1849200-1851200	Enhancers	Primary hematopoietic stem cells	blood
23	chr6:1849400-1851000	Weak transcription	Fetal Thymus	thymus
24	chr6:1849600-1850800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr6:1849600-1851000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:1849600-1851200	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr6:1849800-1850800	Enhancers	Primary B cells from cord blood	blood
28	chr6:1849800-1851200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:1850000-1850400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr6:1850000-1850600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:1850000-1850800	Enhancers	Primary B cells from peripheral blood	blood
32	chr6:1850000-1850800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:1850000-1851000	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr6:1850200-1850600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:1850200-1850600	Bivalent Enhancer	Fetal Lung	lung
36	chr6:1850200-1850800	Enhancers	Brain Germinal Matrix	brain
37	chr6:1850200-1850800	Enhancers	Duodenum Mucosa	Duodenum
38	chr6:1850200-1851200	Enhancers	Fetal Kidney	kidney
39	chr6:1850200-1851400	Enhancers	Fetal Intestine Small	intestine
40	chr6:1850200-1851400	Enhancers	Ovary	ovary
41	chr6:1850200-1851400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr6:1850200-1851400	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr6:1850400-1850800	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr6:1850400-1851000	Enhancers	Fetal Brain Female	brain
45	chr6:1850400-1851400	Enhancers	Stomach Mucosa	stomach
46	chr6:1850400-1852600	Enhancers	Dnd41	blood
47	chr6:1850800-1851000	Flanking Active TSS	Duodenum Mucosa	Duodenum
48	chr6:1850800-1851000	Enhancers	Fetal Muscle Leg	muscle
49	chr6:1850800-1852400	Enhancers	Small Intestine	intestine
50	chr6:1850800-1853800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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