Variant report

Variant	nsv1032529
Chromosome Location	chr9:3254763-3319778
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr9:3261560-3261752	H1-hESC	embryonic stem cell:	n/a	n/a
2	BATF	chr9:3263225-3263487	GM12878	blood:	n/a	chr9:3263379-3263388
3	BATF	chr9:3299884-3300198	GM12878	blood:	n/a	n/a
4	BATF	chr9:3281448-3281693	GM12878	blood:	n/a	n/a
5	BATF	chr9:3281402-3281735	GM12878	blood:	n/a	n/a
6	BATF	chr9:3274410-3274648	GM12878	blood:	n/a	n/a
7	BATF	chr9:3299902-3300171	GM12878	blood:	n/a	n/a
8	BCL11A	chr9:3299966-3300234	GM12878	blood:	n/a	chr9:3300058-3300067
9	BCLAF1	chr9:3299829-3300317	GM12878	blood:	n/a	chr9:3300058-3300067
10	BHLHE40	chr9:3299961-3300253	GM12878	blood:	n/a	n/a
11	BHLHE40	chr9:3257916-3257925	GM12878	blood:	n/a	n/a
12	BRCA1	chr9:3312306-3312402	GM12878	blood:	n/a	n/a
13	CEBPB	chr9:3258936-3259232	HepG2	liver:	n/a	chr9:3259056-3259067
14	CEBPB	chr9:3306693-3307004	IMR90	lung:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306855 chr9:3306844-3306853
15	CEBPB	chr9:3281926-3282134	HepG2	liver:	n/a	chr9:3282041-3282052 chr9:3282041-3282050
16	CEBPB	chr9:3306690-3307017	HepG2	liver:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
17	CEBPB	chr9:3257081-3257085	A549	lung:	n/a	n/a
18	CEBPB	chr9:3288996-3289072	HepG2	liver:	n/a	n/a
19	CEBPB	chr9:3306799-3306969	K562	blood:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
20	CEBPB	chr9:3256609-3257250	IMR90	lung:	n/a	n/a
21	CEBPB	chr9:3281870-3282210	IMR90	lung:	n/a	chr9:3282041-3282052 chr9:3282041-3282050
22	CEBPB	chr9:3258925-3259226	IMR90	lung:	n/a	chr9:3259056-3259067
23	CEBPB	chr9:3258929-3259187	Hela-S3	cervix:	n/a	chr9:3259056-3259067
24	CEBPB	chr9:3306774-3307000	A549	lung:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
25	CEBPB	chr9:3306790-3307016	Hela-S3	cervix:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
26	CEBPB	chr9:3258978-3259229	A549	lung:	n/a	chr9:3259056-3259067
27	CEBPB	chr9:3256616-3256833	K562	blood:	n/a	n/a
28	CEBPB	chr9:3258942-3259174	K562	blood:	n/a	chr9:3259056-3259067
29	CEBPB	chr9:3306688-3306885	H1-hESC	embryonic stem cell:	n/a	chr9:3306844-3306853 chr9:3306842-3306853 chr9:3306844-3306853 chr9:3306842-3306855 chr9:3306844-3306853 chr9:3306844-3306855 chr9:3306844-3306853 chr9:3306842-3306855
30	CEBPB	chr9:3261380-3261412	H1-hESC	embryonic stem cell:	n/a	n/a
31	CTCF	chr9:3314457-3314504	Spleen_OC	spleen:	n/a	n/a
32	CTCF	chr9:3293260-3293410	AoAF	blood vessel:	n/a	n/a
33	CTCF	chr9:3272610-3272659	GM13976	blood:	n/a	n/a
34	CTCF	chr9:3312811-3312839	Spleen_OC	spleen:	n/a	n/a
35	CUX1	chr9:3299909-3300241	GM12878	blood:	n/a	n/a
36	CUX1	chr9:3281475-3281891	GM12878	blood:	n/a	n/a
37	E2F4	chr9:3303335-3303578	MCF10A-Er-Src	breast:	n/a	n/a
38	E2F4	chr9:3268834-3269182	MCF10A-Er-Src	breast:	n/a	n/a
39	EBF1	chr9:3281499-3281769	GM12878	blood:	n/a	n/a
40	EBF1	chr9:3261531-3261846	GM12878	blood:	n/a	n/a
41	ELK1	chr9:3277250-3277287	GM12878	blood:	n/a	n/a
42	EP300	chr9:3277218-3277304	GM12878	blood:	n/a	n/a
43	EP300	chr9:3299887-3300368	GM12878	blood:	n/a	chr9:3300058-3300072
44	EP300	chr9:3285411-3285635	SK-N-SH_RA	brain:	n/a	n/a
45	EP300	chr9:3285215-3286333	SK-N-SH	brain:	n/a	chr9:3285236-3285250 chr9:3286144-3286158
46	EP300	chr9:3281425-3281709	GM12878	blood:	n/a	n/a
47	EP300	chr9:3299923-3300258	GM12878	blood:	n/a	chr9:3300058-3300072
48	EP300	chr9:3281407-3281847	GM12878	blood:	n/a	n/a
49	EP300	chr9:3263326-3263372	GM12878	blood:	n/a	n/a
50	EP300	chr9:3268253-3268779	SK-N-SH_RA	brain:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:3305273-3305323	LNCaP	prostate:	n/a
2	chr9:3305273-3305323	SK-N-SH	brain:	n/a
3	chr9:3305273-3305323	A549	lung:	n/a
4	chr9:3305273-3305323	PANC-1	pancreas:	n/a
5	chr9:3305273-3305323	HIPEpiC	eye:	n/a
6	chr9:3305273-3305323	HepG2	liver:	n/a
7	chr9:3305273-3305323	HRCEpiC	kidney:	n/a
8	chr9:3305273-3305323	HRE	kidney:	n/a
9	chr9:3305273-3305323	HAEpiC	amniotic membrane:	n/a
10	chr9:3305273-3305323	HCPEpiC	choroid plexus:	n/a
11	chr9:3305273-3305323	HPAEpiC	pulmonary alveolar:	n/a
12	chr9:3305273-3305323	SK-N-SH_RA	brain:	n/a
13	chr9:3305273-3305323	HCT-116	colon:	n/a
14	chr9:3305273-3305323	H1-hESC	embryonic stem cell:	embryo
15	chr9:3305273-3305323	Hela-S3	cervix:	n/a
16	chr9:3305273-3305323	NHDF-neo	bronchial:	n/a
17	chr9:3305273-3305323	HCF	heart:	n/a
18	chr9:3305273-3305323	CMK	blood:	n/a
19	chr9:3305273-3305323	HEEpiC	esophagus:	n/a
20	chr9:3305273-3305323	AG04449	skin:	fetal
21	chr9:3305273-3305323	NB4	blood:	n/a
22	chr9:3305273-3305323	BE2_C	brain:	n/a
23	chr9:3305273-3305323	NH-A	brain:	n/a
24	chr9:3305273-3305323	PFSK-1	brain:	n/a
25	chr9:3305273-3305323	GM19239	blood:	n/a
26	chr9:3305273-3305323	SKMC	muscle:	n/a
27	chr9:3305273-3305323	IMR90	lung:	fetal
28	chr9:3305273-3305323	Caco-2	colon:	n/a
29	chr9:3305273-3305323	GM12878	blood:	n/a
30	chr9:3305273-3305323	NHBE	bronchial:	n/a
31	chr9:3305273-3305323	ovcar-3	ovarian:	n/a
32	chr9:3305273-3305323	HCM	heart:	n/a
33	chr9:3305273-3305323	HUVEC	blood vessel:	n/a
34	chr9:3305273-3305323	BJ	skin:	n/a
35	chr9:3305273-3305323	NT2-D1	testis:	n/a
36	chr9:3305273-3305323	HMEC	breast:	n/a
37	chr9:3305273-3305323	AG04450	lung:	fetal
38	chr9:3305273-3305323	Hepatocyte	liver:	n/a
39	chr9:3305273-3305323	ProgFib	skin:	n/a
40	chr9:3305273-3305323	GM12892	blood:	n/a
41	chr9:3305273-3305323	PrEC	prostate:	n/a
42	chr9:3305273-3305323	GM12891	blood:	n/a
43	chr9:3305273-3305323	AG10803	skin:	n/a
44	chr9:3305273-3305323	HL-60	blood:	n/a
45	chr9:3305273-3305323	T-47D	breast:	n/a
46	chr9:3305273-3305323	MCF-7	breast:	n/a
47	chr9:3305273-3305323	AG09309	skin:	n/a
48	chr9:3305273-3305323	MCF10A-Er-Src	breast:	n/a
49	chr9:3305273-3305323	U87	brain:	n/a
50	chr9:3305273-3305323	ECC-1	luminal epithelium:	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:3254757..3256417-chr9:3258277..3260050,2	K562	blood:
2	chr9:3296136..3298871-chr9:3302065..3304976,2	K562	blood:
3	chr9:3308299..3310397-chr9:3310647..3312934,2	MCF-7	breast:
4	chr9:3308299..3310397-chr9:3310647..3312934,2	MCF-7	breast:
5	chr9:3263553..3265198-chr9:3266270..3268417,2	K562	blood:
6	chr9:3296136..3298871-chr9:3302065..3304976,2	K562	blood:
7	chr9:3254757..3256417-chr9:3258277..3260050,2	K562	blood:
8	chr9:3263553..3265198-chr9:3266270..3268417,2	K562	blood:
9	chr9:3218527..3221399-chr9:3268473..3270542,2	K562	blood:

Variant related genes	Relation type
RFX3	TF binding region
RFX3	CpG island

Extended variants
information (count: 2969 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:2969 , 50 per page) page: 1 2 3 4 5 6 7 ... 60

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs180809388	chr9:3254763-3254764	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs186459147	chr9:3254768-3254769	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs570026769	chr9:3254810-3254811	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs538818048	chr9:3254895-3254896	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs191284020	chr9:3254902-3254903	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs551027963	chr9:3254917-3254918	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs565394756	chr9:3254937-3254938	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs113586979	chr9:3254954-3254955	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs570972188	chr9:3254959-3254960	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs375654874	chr9:3254964-3254965	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs567658620	chr9:3254970-3254971	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs183063821	chr9:3255034-3255035	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574379988	chr9:3255040-3255041	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs688017	chr9:3255096-3255097	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs529699782	chr9:3255097-3255098	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs577232696	chr9:3255109-3255110	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs148810101	chr9:3255130-3255131	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs72699008	chr9:3255143-3255144	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs559598703	chr9:3255150-3255151	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs142390008	chr9:3255151-3255152	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs541193838	chr9:3255155-3255156	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs568706680	chr9:3255206-3255207	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs536192768	chr9:3255233-3255234	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs187353494	chr9:3255241-3255242	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376877853	chr9:3255268-3255269	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs530007705	chr9:3255316-3255317	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs660374	chr9:3255343-3255344	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs563589254	chr9:3255413-3255414	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs532673566	chr9:3255414-3255415	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs552341362	chr9:3255416-3255417	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs566190734	chr9:3255424-3255425	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs534695038	chr9:3255443-3255444	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs548016900	chr9:3255448-3255449	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs375106933	chr9:3255449-3255450	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs146146770	chr9:3255461-3255462	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs80350456	chr9:3255493-3255494	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs556999601	chr9:3255494-3255495	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs549600381	chr9:3255518-3255519	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs373458103	chr9:3255544-3255545	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs140037906	chr9:3255555-3255556	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs539784838	chr9:3255600-3255601	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs190616448	chr9:3255619-3255620	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs572987845	chr9:3255680-3255681	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542023151	chr9:3255687-3255688	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs561194184	chr9:3255725-3255726	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs10970993	chr9:3255748-3255749	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs543370559	chr9:3255768-3255769	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs34308562	chr9:3255770-3255771	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs58921706	chr9:3255776-3255777	Strong transcription Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs369542966	chr9:3255788-3255789	Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Gastric cancer	16715143	CNVD
Glioblastoma multiforme	22286061	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Intracranial aneurysm	16715129	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Disorders of sex development	22290220	CNVD
Glioblastoma multiforme	21080181	CNVD
Sudden cardiac death	19188705	CNVD
Non-small cell lung cancer	21829676	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Non-small cell lung cancer	21952639	CNVD
Disorders of sex development	21048976	CNVD
Neuroblastoma	18923191	CNVD
Intellectual disability	22102821	CNVD
abnormal development	18461090	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Developmental delay	21147756	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	20531469	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Myelodysplastic syndrome	21251322	CNVD
Breast cancer	21785460	CNVD
Prostate cancer	18632612	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21364760	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Myelofibrosis	22110671	CNVD
Developmental delay	21373258	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Hepatocellular carcinoma	18803288	CNVD
Ovarian cancer	22355333	CNVD
Autism	20808228	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Renal cell carcinoma	21215367	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:783 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:3220000-3256600	Weak transcription	Brain Anterior Caudate	brain
2	chr9:3220400-3287400	Weak transcription	Psoas Muscle	Psoas
3	chr9:3221800-3256400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:3222200-3256200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:3222200-3269400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr9:3222400-3254800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:3223200-3254800	Weak transcription	Brain Angular Gyrus	brain
8	chr9:3223200-3277000	Weak transcription	HSMMtube	muscle
9	chr9:3223400-3270200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:3223600-3255400	Weak transcription	Right Ventricle	heart
11	chr9:3223600-3256600	Weak transcription	Thymus	Thymus
12	chr9:3223600-3264400	Weak transcription	Fetal Intestine Small	intestine
13	chr9:3223600-3271600	Weak transcription	Lung	lung
14	chr9:3223600-3284800	Weak transcription	Spleen	Spleen
15	chr9:3224000-3275800	Weak transcription	Gastric	stomach
16	chr9:3225200-3262800	Weak transcription	Esophagus	oesophagus
17	chr9:3225800-3255600	Weak transcription	Fetal Stomach	stomach
18	chr9:3226600-3289600	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:3227400-3256600	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:3232400-3256400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr9:3233600-3256400	Weak transcription	Brain Substantia Nigra	brain
22	chr9:3233600-3292600	Weak transcription	Pancreas	Pancrea
23	chr9:3234000-3256400	Weak transcription	Liver	Liver
24	chr9:3234800-3294400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:3235800-3269800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr9:3236000-3255200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr9:3236200-3271600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:3236800-3254800	Weak transcription	Brain Germinal Matrix	brain
29	chr9:3236800-3254800	Weak transcription	Ovary	ovary
30	chr9:3236800-3256400	Weak transcription	Fetal Brain Female	brain
31	chr9:3236800-3257000	Weak transcription	Aorta	Aorta
32	chr9:3236800-3266600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr9:3238000-3276800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr9:3238200-3254800	Weak transcription	Fetal Brain Male	brain
35	chr9:3238600-3263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:3241400-3278000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr9:3241600-3254800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr9:3241600-3276800	Weak transcription	Placenta	Placenta
39	chr9:3241800-3255200	Weak transcription	Fetal Kidney	kidney
40	chr9:3241800-3256400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr9:3241800-3256600	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr9:3241800-3271200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr9:3242000-3262400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:3242000-3278000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr9:3242200-3261400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr9:3242200-3287800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:3242800-3261600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr9:3243800-3262600	Weak transcription	Dnd41	blood
49	chr9:3243800-3279200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr9:3244000-3262600	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links