Variant report

Variant	nsv1033026
Chromosome Location	chr6:76884959-76904508
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 186 )
Associated
traits (count: 98 )

Variant overlapped rSNPs/rCNVs (count:186 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs6453858	chr6:76884959-76884960	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs545162746	chr6:76884981-76884982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs563646493	chr6:76884994-76884995	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs35125026	chr6:76885055-76885056	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs188711626	chr6:76885255-76885256	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs181550074	chr6:76885270-76885271	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs528457313	chr6:76885300-76885301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs547096855	chr6:76885304-76885305	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs114006172	chr6:76885332-76885333	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs377207260	chr6:76885371-76885372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs570157461	chr6:76885380-76885381	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs146141937	chr6:76885383-76885384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs141955076	chr6:76885399-76885400	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs185977745	chr6:76885486-76885487	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs543743882	chr6:76885512-76885513	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs536590399	chr6:76885519-76885520	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs190324623	chr6:76885543-76885544	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs111459638	chr6:76885548-76885549	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs182262287	chr6:76885569-76885570	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs576487905	chr6:76885601-76885602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs536959189	chr6:76885603-76885604	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557177136	chr6:76885634-76885635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs575420859	chr6:76885675-76885676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs543336655	chr6:76885690-76885691	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs79287055	chr6:76885728-76885729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs528505073	chr6:76885744-76885745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs187311027	chr6:76885747-76885748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs190857093	chr6:76885750-76885751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs529109107	chr6:76885858-76885859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs147838744	chr6:76885879-76885880	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs551086744	chr6:76885880-76885881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs569107014	chr6:76885885-76885886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs529828312	chr6:76885890-76885891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs9447639	chr6:76885936-76885937	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs566614711	chr6:76885973-76885974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs533791940	chr6:76885997-76885998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs558082767	chr6:76886008-76886009	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs570109140	chr6:76886016-76886017	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs537588241	chr6:76886036-76886037	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs79384249	chr6:76886040-76886041	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs575820616	chr6:76886043-76886044	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542822421	chr6:76886045-76886046	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs555256460	chr6:76886054-76886055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs573412725	chr6:76886055-76886056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs141358277	chr6:76886061-76886062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs143533510	chr6:76886115-76886116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs369202455	chr6:76886128-76886129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs532535244	chr6:76886139-76886140	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs148030492	chr6:76886182-76886183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs35674717	chr6:76886192-76886193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:98)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76884600-76885000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:76885000-76885600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:76885600-76888200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:76888200-76888800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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