Variant report

Variant	nsv1033731
Chromosome Location	chr6:77750293-77941524
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
2	chr6:77756209..77758349-chr6:77773587..77775917,2	MCF-7	breast:
3	chr3:129659620..129661352-chr6:77785922..77787442,2	MCF-7	breast:
4	chr6:77789816..77792287-chr6:77876567..77879550,2	K562	blood:
5	chr6:58777416..58779792-chr6:77801547..77804072,2	MCF-7	breast:
6	chr6:77883269..77883819-chr6:78167410..78168146,2	MCF-7	breast:
7	chr6:77789816..77792287-chr6:77876567..77879550,2	K562	blood:
8	chr6:77882123..77883969-chr6:77885835..77887575,2	MCF-7	breast:
9	chr6:77882123..77883969-chr6:77885835..77887575,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MYO6-14	chr6:77861536-77861691	NONHSAT113655
2	lnc-HTR1B-2	chr6:77860918-77860954	XLOC_005768
3	lnc-MYO6-11	chr6:77754733-77754969	l_3207_chr6:77541429-77755145_testes
4	lnc-HTR1B-2	chr6:77822661-77823096	XLOC_005768
5	lnc-MYO6-14	chr6:77860253-77860997	NONHSAT113655
6	lnc-MYO6-11	chr6:77755026-77755145	l_3207_chr6:77541429-77755145_testes
7	lnc-MYO6-15	chr6:77849239-77849469	NONHSAT113650
8	lnc-MYO6-12	chr6:77798170-77801007	NONHSAT113653

No data

Variant related genes	Relation type
PRKD3	miRNA target sites
CHMP2B	miRNA target sites

Extended variants
information (count: 4533 )
Associated
traits (count: 101 )

Variant overlapped rSNPs/rCNVs (count:4533 , 50 per page) page: 1 2 3 4 5 6 7 ... 91

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76047584	chr6:77750294-77750295	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs115426442	chr6:77750316-77750317	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs571165218	chr6:77750317-77750318	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs146224747	chr6:77750348-77750349	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs79069593	chr6:77750367-77750368	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs550417741	chr6:77750390-77750391	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs75316821	chr6:77750412-77750413	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs6917656	chr6:77750416-77750417	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs57722197	chr6:77750417-77750418	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs554270175	chr6:77750420-77750421	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs139217161	chr6:77750450-77750451	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs74569036	chr6:77750470-77750471	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs539861654	chr6:77750471-77750472	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs542181510	chr6:77750483-77750484	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs139823267	chr6:77750524-77750525	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs11267328	chr6:77750528-77750529	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs367735404	chr6:77750534-77750535	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs71749072	chr6:77750536-77750537	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs377309541	chr6:77750554-77750555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs557825788	chr6:77750588-77750589	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs370019129	chr6:77750596-77750597	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs78506992	chr6:77750609-77750610	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs11760092	chr6:77750678-77750679	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs555159365	chr6:77750786-77750787	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs573537190	chr6:77750787-77750788	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs75511227	chr6:77750809-77750810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs559447095	chr6:77750811-77750812	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs142549659	chr6:77750822-77750823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs531257475	chr6:77750847-77750848	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs189117863	chr6:77750859-77750860	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs563106847	chr6:77750875-77750876	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs532057259	chr6:77750920-77750921	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs566239984	chr6:77750952-77750953	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs199588837	chr6:77750967-77750968	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs370216490	chr6:77750968-77750969	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs370431772	chr6:77751005-77751006	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs568748108	chr6:77751007-77751008	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs529557986	chr6:77751034-77751035	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs34822884	chr6:77751057-77751058	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs547665680	chr6:77751136-77751137	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs566172696	chr6:77751185-77751186	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs551503313	chr6:77751232-77751233	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs539503105	chr6:77751233-77751234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs558155501	chr6:77751235-77751236	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs73461481	chr6:77751241-77751242	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs111254459	chr6:77751250-77751251	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs28464600	chr6:77751268-77751269	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs150931650	chr6:77751288-77751289	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs73461482	chr6:77751318-77751319	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs569642397	chr6:77751320-77751321	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:101)

Disease	PMID	Source
Uveal melanoma	21693616	CNVD
Glioblastoma multiforme	21080181	CNVD
Biliary cancer	19435499	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	21448237	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	22495311	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Neuroblastoma	18923191	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Systemic lupus erythematosus	17503323	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Cancer	21637783	CNVD
Colorectal cancer	16272173	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
T-cell lymphomas	19863542	CNVD
Lung cancer	18438408	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Follicular lymphoma	19010834	CNVD
Non-small cell lung cancer	21044232	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Hepatocellular carcinoma	22174799	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21385341	CNVD
Prostate cancer	16705090	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Ependymoma	16718352	CNVD
High-proliferative meningiomas	17937814	CNVD
Intracranial tumor	16823260	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Prostate cancer	16573809	CNVD
Breast cancer	16272173	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Urothelial carcinoma	18382360	CNVD
Ovarian neoplasms	16753589	CNVD
Hepatocellular carcinoma	16750200	CNVD
Wilms tumour	21544195	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Follicular lymphoma	17699855	CNVD
Breast cancer	17133270	CNVD
Leukemia	18688285	CNVD
Prostate cancer	19242612	CNVD
Developmental delay	21147756	CNVD
Glioma	21046410	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Zellweger syndrome	21572526	CNVD
Follicular lymphoma	20505157	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Malignant melanoma	18718029	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Lung adenocarcinoma	21935476	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Salivary gland tumor	18059337	CNVD
Lung cancer	16773561	CNVD
Glioblastoma multiforme	22286061	CNVD
Urothelial cell carcinoma	18451213	CNVD
Prostate cancer	16461572	CNVD
Mental retardation	21045960	CNVD
Obesity	21045960	CNVD
learning difficulties	21045960	CNVD
Prostate cancer	17245344	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Cancer	20164920	CNVD
Burkitt''s lymphoma	20823134	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:204 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77748400-77750800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:77748800-77751000	Enhancers	Osteobl	bone
3	chr6:77750000-77750400	Enhancers	HSMM	muscle
4	chr6:77750000-77750800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:77750000-77751400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:77750000-77751400	Enhancers	HMEC	breast
7	chr6:77750200-77750400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:77750200-77750600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:77750200-77751000	Enhancers	NHEK	skin
10	chr6:77750400-77751000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:77750800-77751000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:77755000-77756400	Enhancers	HUVEC	blood vessel
13	chr6:77765200-77765600	Enhancers	Ovary	ovary
14	chr6:77768400-77773200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:77772400-77773200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:77772800-77773600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:77773200-77773600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:77773200-77773600	ZNF genes & repeats	Pancreas	Pancrea
19	chr6:77773200-77773800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:77773200-77773800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:77773200-77773800	ZNF genes & repeats	Esophagus	oesophagus
22	chr6:77773200-77773800	ZNF genes & repeats	Gastric	stomach
23	chr6:77773400-77773800	ZNF genes & repeats	Aorta	Aorta
24	chr6:77773600-77773800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:77773800-77779000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:77779000-77779600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:77779400-77779600	ZNF genes & repeats	Liver	Liver
28	chr6:77779600-77781400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:77779600-77782400	Weak transcription	Liver	Liver
30	chr6:77782400-77782600	Enhancers	Liver	Liver
31	chr6:77782600-77783000	Active TSS	Liver	Liver
32	chr6:77783000-77783800	Weak transcription	Liver	Liver
33	chr6:77783800-77784400	Enhancers	Liver	Liver
34	chr6:77784000-77784200	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr6:77784000-77784400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr6:77784000-77784600	Enhancers	HUES48 Cell Line	embryonic stem cell
37	chr6:77784200-77784600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:77784400-77784600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr6:77784400-77785600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:77784600-77785600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:77784600-77785600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:77785600-77785800	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr6:77785600-77787200	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr6:77785600-77787200	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr6:77785600-77787400	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr6:77785800-77786200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr6:77786200-77786800	Enhancers	HUES64 Cell Line	embryonic stem cell
48	chr6:77786200-77787400	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr6:77799400-77800200	Enhancers	HMEC	breast
50	chr6:77802400-77803600	Enhancers	HSMMtube	muscle

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