Variant report

Variant	nsv1034584
Chromosome Location	chr9:9458137-9486282
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 628 )
Associated
traits (count: 112 )

Variant overlapped rSNPs/rCNVs (count:628 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs113471794	chr9:9464024-9464025	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs534594420	chr9:9464039-9464040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs10977782	chr9:9464056-9464057	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs564569019	chr9:9464078-9464079	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs538885590	chr9:9464084-9464085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs557197765	chr9:9464088-9464089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs10977783	chr9:9464090-9464091	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
8	rs536362047	chr9:9464113-9464114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs117073150	chr9:9464114-9464115	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs572829103	chr9:9464135-9464136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs372967351	chr9:9464156-9464157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs550364923	chr9:9464181-9464182	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs112124550	chr9:9464199-9464200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs569859776	chr9:9464202-9464203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs112397191	chr9:9464234-9464235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs112636652	chr9:9464258-9464259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs545154752	chr9:9464370-9464371	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs529591133	chr9:9464379-9464380	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs147736697	chr9:9464401-9464402	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs10491614	chr9:9464410-9464411	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs191268073	chr9:9464450-9464451	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs561114036	chr9:9464479-9464480	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs62533171	chr9:9464498-9464499	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs546915570	chr9:9464507-9464508	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs141089958	chr9:9464527-9464528	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs369546124	chr9:9464544-9464545	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs150278489	chr9:9464557-9464558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs183759737	chr9:9464559-9464560	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs10491613	chr9:9464561-9464562	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs114695610	chr9:9464598-9464599	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs145813121	chr9:9464608-9464609	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs76466806	chr9:9464620-9464621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs75466907	chr9:9464621-9464622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs373497609	chr9:9464634-9464635	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs148992335	chr9:9464642-9464643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs145309400	chr9:9464651-9464652	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs558136374	chr9:9464672-9464673	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs577880993	chr9:9464686-9464687	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs137939239	chr9:9464699-9464700	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs577296023	chr9:9464740-9464741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs575832831	chr9:9464766-9464767	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542748804	chr9:9464808-9464809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs561480775	chr9:9464811-9464812	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs142321188	chr9:9464819-9464820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs536862611	chr9:9464860-9464861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs556708916	chr9:9464868-9464869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs144611302	chr9:9464888-9464889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs118147120	chr9:9464912-9464913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs148202198	chr9:9464914-9464915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs550880887	chr9:9464932-9464933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:112)

Disease	PMID	Source
abnormal development	18461090	CNVD
Disorders of sex development	21048976	CNVD
Honadal dysgenesis	21048976	CNVD
Medulloblastoma	21979893	CNVD
Lung cancer	16740712	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Chronic myeloid leukemia	21384125	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
XY gonadal dysgenesis	20685758	CNVD
Urothelial carcinoma	21177765	CNVD
Oral cancer	21386901	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma	19074898	CNVD
Malignant melanoma	19074898	CNVD
Prostate cancer	16573809	CNVD
Metanephric adenoma	20802469	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Lung cancer	20668451	CNVD
Schizophrenia	20838587	CNVD
Glioblastoma	18772890	CNVD
Glioblastoma multiforme	21390271	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Autism	20858261	CNVD
Epilepsy	20858261	CNVD
Mental retardation	20858261	CNVD
Developmental delay	21147756	CNVD
small cell lung cancer	21764851	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Colorectal cancer	16272173	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Gastric cancer	16891809	CNVD
Mental retardation	17847001	CNVD
Cutaneous squamous cell carcinomas	17420988	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Acute myeloid leukemia	21251322	CNVD
Autism	20531469	CNVD
Lung adenocarcinoma	17982442	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9464000-9465000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:9465000-9465800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr9:9465800-9469600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:9469600-9469800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:9469800-9470000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:9470000-9470200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr9:9470200-9470400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr9:9478400-9480200	Enhancers	Fetal Lung	lung
9	chr9:9482600-9483800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr9:9482800-9484800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:9483200-9483600	Enhancers	Brain Hippocampus Middle	brain
12	chr9:9483200-9483800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:9483800-9489000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:9484800-9488800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links