Variant report

Variant	nsv1035154
Chromosome Location	chr10:89657150-89676485
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:89664308..89666763-chr10:89666993..89669355,2	MCF-7	breast:
2	chr10:89664308..89666763-chr10:89666993..89669355,2	MCF-7	breast:
3	chr10:89620708..89622747-chr10:89669240..89671588,2	MCF-7	breast:
4	chr10:89675397..89677739-chr10:89684707..89687220,2	K562	blood:
5	chr10:89620299..89623441-chr10:89672450..89675807,5	MCF-7	breast:
6	chr10:89671040..89673279-chr10:89675598..89677494,2	K562	blood:
7	chr10:89649701..89651266-chr10:89669658..89672345,2	MCF-7	breast:
8	chr10:89671040..89673279-chr10:89675598..89677494,2	K562	blood:
9	chr10:89671146..89673722-chr10:89679466..89681540,2	MCF-7	breast:
10	chr10:89638682..89641996-chr10:89653428..89657390,3	K562	blood:
11	chr10:89673644..89678140-chr10:89679296..89683460,5	K562	blood:
12	chr10:89621045..89623534-chr10:89654596..89657303,2	MCF-7	breast:
13	chr10:89622810..89625239-chr10:89664695..89667613,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000171862	chromatin interactions
ENSG00000227268	chromatin interactions

Extended variants
information (count: 773 )
Associated
traits (count: 121 )

Variant overlapped rSNPs/rCNVs (count:773 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2299939	chr10:89657150-89657151	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs537861377	chr10:89657179-89657180	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs556574398	chr10:89657184-89657185	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs569514368	chr10:89657192-89657193	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs372397165	chr10:89657225-89657226	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs578160717	chr10:89657335-89657336	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs114884016	chr10:89657367-89657368	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs560366217	chr10:89657417-89657418	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs374058366	chr10:89657507-89657508	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs78772378	chr10:89657514-89657515	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs373071162	chr10:89657518-89657519	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs542897754	chr10:89657523-89657524	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs117715001	chr10:89657538-89657539	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs531288524	chr10:89657556-89657557	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs376949446	chr10:89657577-89657578	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs549530829	chr10:89657580-89657581	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs191347778	chr10:89657587-89657588	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs77785577	chr10:89657594-89657595	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs547120376	chr10:89657612-89657613	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs566723015	chr10:89657613-89657614	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs534171520	chr10:89657623-89657624	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs528411495	chr10:89657629-89657630	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs549613492	chr10:89657637-89657638	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs2447624	chr10:89657675-89657676	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs538212552	chr10:89657679-89657680	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs1234217	chr10:89657728-89657729	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs545454801	chr10:89657745-89657746	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs149314276	chr10:89657746-89657747	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs143593908	chr10:89657753-89657754	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs189439084	chr10:89657800-89657801	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs547931016	chr10:89657823-89657824	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs148067339	chr10:89657870-89657871	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs193161167	chr10:89657944-89657945	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs142561089	chr10:89657951-89657952	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs564518598	chr10:89657954-89657955	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs532028433	chr10:89657979-89657980	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs547083621	chr10:89657990-89657991	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs185096372	chr10:89658018-89658019	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs190027712	chr10:89658024-89658025	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs549333310	chr10:89658026-89658027	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs10887764	chr10:89658056-89658057	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs181153253	chr10:89658071-89658072	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs550541418	chr10:89658116-89658117	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs571657791	chr10:89658136-89658137	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs370915452	chr10:89658165-89658166	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539043579	chr10:89658175-89658176	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs554260783	chr10:89658242-89658243	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs566059349	chr10:89658277-89658278	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs541060642	chr10:89658307-89658308	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs536409147	chr10:89658359-89658360	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:121)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Glioblastoma multiforme	21569311	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Glioblastoma multiforme	19115005	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Melanoma	20877625	CNVD
Non-syndromic sensorineural hearing loss	20020426	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	22065749	CNVD
Cancer	22000013	CNVD
Colon cancer	22065749	CNVD
Endometrial cancer	22065749	CNVD
Lung cancer	20668451	CNVD
Breast cancer	17634833	CNVD
Cancer	20215515	CNVD
Glioblastoma multiforme	21727940	CNVD
Prostate cancer	19363497	CNVD
Prostate cancer	17700571	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cutaneous malignant melanoma	18794153	CNVD
Ovarian cancer	21781307	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20964600	CNVD
Endometrial cancer	19261849	CNVD
Central neurocytomas	17123091	CNVD
Malignant melanoma	17260012	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Lung adenocarcinoma	17982442	CNVD
Bannayan-Riley-Ruvalcaba syndrome	20848651	CNVD

Chromatin state (count:832 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
4	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
5	chr10:89633400-89675800	Weak transcription	Small Intestine	intestine
6	chr10:89636200-89661800	Weak transcription	Brain Anterior Caudate	brain
7	chr10:89641600-89663000	Weak transcription	Esophagus	oesophagus
8	chr10:89646600-89663800	Weak transcription	Fetal Kidney	kidney
9	chr10:89646800-89657400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:89646800-89659400	Strong transcription	Fetal Thymus	thymus
11	chr10:89646800-89663000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr10:89647000-89667400	Weak transcription	HMEC	breast
13	chr10:89647000-89711200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:89647200-89657400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr10:89647200-89662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:89647200-89675400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr10:89647600-89671800	Weak transcription	HUVEC	blood vessel
18	chr10:89647800-89662000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:89647800-89665600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:89647800-89671000	Weak transcription	A549	lung
21	chr10:89648000-89657800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:89648000-89657800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:89648000-89663000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:89648000-89663000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:89648000-89663000	Weak transcription	Lung	lung
26	chr10:89648000-89663200	Weak transcription	Gastric	stomach
27	chr10:89648000-89663200	Weak transcription	Spleen	Spleen
28	chr10:89648000-89664200	Weak transcription	NH-A	brain
29	chr10:89648000-89683000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr10:89648200-89657200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:89648200-89662800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr10:89648200-89663000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:89648200-89663200	Weak transcription	Colonic Mucosa	Colon
34	chr10:89648200-89674400	Weak transcription	Right Ventricle	heart
35	chr10:89648400-89657800	Weak transcription	Adipose Nuclei	Adipose
36	chr10:89648400-89657800	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:89648400-89662000	Weak transcription	Thymus	Thymus
38	chr10:89648400-89662800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr10:89648400-89662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:89648400-89663200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr10:89648400-89663200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:89648400-89663200	Weak transcription	HSMMtube	muscle
43	chr10:89648600-89662000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr10:89648600-89662800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:89651000-89657600	Weak transcription	Placenta	Placenta
46	chr10:89651800-89657400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr10:89651800-89662800	Weak transcription	Fetal Stomach	stomach
48	chr10:89651800-89672600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr10:89652000-89658000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:89652800-89663000	Weak transcription	Fetal Intestine Large	intestine

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