Variant report

Variant	nsv1035385
Chromosome Location	chr12:33538510-34078208
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2028)
CpG islands
(count:1160)
Chromatin interactive
region (count:219)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2028 , 50 per page) page: 1 2 3 4 5 6 7 ... 41

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr12:33807257-33807627	K562	blood:	n/a	n/a
2	ARID3A	chr12:33905885-33906235	K562	blood:	n/a	n/a
3	ARID3A	chr12:33740984-33742025	K562	blood:	n/a	n/a
4	ARID3A	chr12:33806348-33806595	K562	blood:	n/a	n/a
5	ARID3A	chr12:33831095-33831857	K562	blood:	n/a	n/a
6	ATF1	chr12:33807257-33807582	K562	blood:	n/a	n/a
7	ATF1	chr12:33580111-33580282	K562	blood:	n/a	n/a
8	ATF1	chr12:33590564-33590891	K562	blood:	n/a	n/a
9	ATF1	chr12:33905799-33906217	K562	blood:	n/a	n/a
10	ATF1	chr12:33749134-33749614	K562	blood:	n/a	n/a
11	ATF1	chr12:33918231-33918238	K562	blood:	n/a	n/a
12	ATF1	chr12:33582476-33582638	K562	blood:	n/a	n/a
13	ATF1	chr12:33837952-33838076	K562	blood:	n/a	n/a
14	ATF1	chr12:33740996-33741606	K562	blood:	n/a	n/a
15	ATF2	chr12:33740922-33741468	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF2	chr12:33740950-33741433	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr12:33741735-33742256	GM12878	blood:	n/a	n/a
18	ATF3	chr12:33806344-33806588	K562	blood:	n/a	n/a
19	ATF3	chr12:33740980-33741602	K562	blood:	n/a	n/a
20	BACH1	chr12:33625286-33625549	H1-hESC	embryonic stem cell:	n/a	n/a
21	BACH1	chr12:33854735-33854758	H1-hESC	embryonic stem cell:	n/a	n/a
22	BACH1	chr12:33740516-33741383	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr12:33847319-33847363	K562	blood:	n/a	n/a
24	BACH1	chr12:33591361-33591590	H1-hESC	embryonic stem cell:	n/a	n/a
25	BACH1	chr12:33613710-33613715	K562	blood:	n/a	n/a
26	BACH1	chr12:33812366-33812495	K562	blood:	n/a	n/a
27	BACH1	chr12:33592008-33593130	H1-hESC	embryonic stem cell:	n/a	n/a
28	BACH1	chr12:33751125-33751167	K562	blood:	n/a	n/a
29	BACH1	chr12:33807354-33807505	K562	blood:	n/a	n/a
30	BACH1	chr12:33583365-33583487	K562	blood:	n/a	n/a
31	BACH1	chr12:33905912-33906117	H1-hESC	embryonic stem cell:	n/a	n/a
32	BATF	chr12:33741913-33742237	GM12878	blood:	n/a	n/a
33	BCL11A	chr12:33741023-33741182	H1-hESC	embryonic stem cell:	n/a	n/a
34	BCL11A	chr12:33802958-33803315	H1-hESC	embryonic stem cell:	n/a	chr12:33803028-33803037
35	BHLHE40	chr12:33591276-33591724	K562	blood:	n/a	n/a
36	BHLHE40	chr12:33759769-33760039	K562	blood:	n/a	n/a
37	BHLHE40	chr12:33759702-33760074	GM12878	blood:	n/a	n/a
38	BHLHE40	chr12:33905773-33906139	K562	blood:	n/a	n/a
39	BHLHE40	chr12:33697751-33697753	K562	blood:	n/a	n/a
40	BHLHE40	chr12:33741303-33741660	GM12878	blood:	n/a	n/a
41	BHLHE40	chr12:33734583-33735390	GM12878	blood:	n/a	n/a
42	BHLHE40	chr12:33741030-33741823	K562	blood:	n/a	n/a
43	BHLHE40	chr12:33592354-33592978	K562	blood:	n/a	n/a
44	BHLHE40	chr12:33867451-33867477	K562	blood:	n/a	n/a
45	BHLHE40	chr12:33806387-33806560	K562	blood:	n/a	n/a
46	BRCA1	chr12:33740352-33740651	Hela-S3	cervix:	n/a	n/a
47	BRCA1	chr12:33713910-33713913	H1-hESC	embryonic stem cell:	n/a	n/a
48	BRCA1	chr12:34046005-34046050	Hela-S3	cervix:	n/a	n/a
49	CBX3	chr12:33772340-33772799	K562	blood:	n/a	n/a
50	CBX3	chr12:33770775-33771015	K562	blood:	n/a	n/a

(count:1160 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:33592285-33592335	NH-A	brain:	n/a
2	chr12:33592285-33592335	NH-A	brain:	n/a
3	chr12:34001319-34001369	PrEC	prostate:	n/a
4	chr12:33591505-33591555	HL-60	blood:	n/a
5	chr12:33592078-33592128	A549	lung:	n/a
6	chr12:33591336-33591386	HPAEpiC	pulmonary alveolar:	n/a
7	chr12:33592500-33592550	ProgFib	skin:	n/a
8	chr12:33589594-33589644	AG09309	skin:	n/a
9	chr12:33592642-33592692	BE2_C	brain:	n/a
10	chr12:33750494-33750544	AG04449	skin:	fetal
11	chr12:33591505-33591555	Caco-2	colon:	n/a
12	chr12:33590837-33590887	HAEpiC	amniotic membrane:	n/a
13	chr12:33592285-33592335	SKMC	muscle:	n/a
14	chr12:33591505-33591555	Hepatocyte	liver:	n/a
15	chr12:33593913-33593963	SK-N-MC	brain:	n/a
16	chr12:33750494-33750544	Hepatocyte	liver:	n/a
17	chr12:33590837-33590887	NB4	blood:	n/a
18	chr12:33593913-33593963	Caco-2	colon:	n/a
19	chr12:33593177-33593227	HNPCEpiC	eye:	n/a
20	chr12:33591336-33591386	Caco-2	colon:	n/a
21	chr12:33787337-33787387	HRPEpiC	eye:	n/a
22	chr12:33593913-33593963	HEK293	kidney:	embryo
23	chr12:34001319-34001369	GM12878	blood:	n/a
24	chr12:33591336-33591386	BJ	skin:	n/a
25	chr12:33593004-33593054	K562	blood:	n/a
26	chr12:33593177-33593227	GM12892	blood:	n/a
27	chr12:33591336-33591386	NH-A	brain:	n/a
28	chr12:33592500-33592550	Hepatocyte	liver:	n/a
29	chr12:33595118-33595168	SKMC	muscle:	n/a
30	chr12:33591505-33591555	GM12878	blood:	n/a
31	chr12:33591336-33591386	GM12892	blood:	n/a
32	chr12:33593913-33593963	PrEC	prostate:	n/a
33	chr12:33592642-33592692	Hepatocyte	liver:	n/a
34	chr12:33595118-33595168	U87	brain:	n/a
35	chr12:33787337-33787387	SK-N-SH	brain:	n/a
36	chr12:33589594-33589644	NT2-D1	testis:	n/a
37	chr12:33593049-33593099	HepG2	liver:	n/a
38	chr12:33593049-33593099	ProgFib	skin:	n/a
39	chr12:34001319-34001369	SK-N-SH_RA	brain:	n/a
40	chr12:33593049-33593099	NB4	blood:	n/a
41	chr12:33592642-33592692	HUVEC	blood vessel:	n/a
42	chr12:33592642-33592692	GM12892	blood:	n/a
43	chr12:33750494-33750544	HCF	heart:	n/a
44	chr12:33593049-33593099	HEK293	kidney:	embryo
45	chr12:33589594-33589644	NHBE	bronchial:	n/a
46	chr12:33589594-33589644	HRCEpiC	kidney:	n/a
47	chr12:33591899-33591949	PANC-1	pancreas:	n/a
48	chr12:33590837-33590887	AG09309	skin:	n/a
49	chr12:33593049-33593099	MCF10A-Er-Src	breast:	n/a
50	chr12:34061681-34061731	HAEpiC	amniotic membrane:	n/a

(count:219 , 50 per page) page: 1 2 3 4 5

No.	Distal block	Cell Line	Cell type
1	chr12:33828756..33830899-chr12:33837528..33839909,2	MCF-7	breast:
2	chr12:33903835..33905859-chr12:33907919..33910698,2	MCF-7	breast:
3	chr12:33817225..33819690-chr12:33823230..33824769,2	MCF-7	breast:
4	chr12:33753748..33755380-chr12:33758835..33761146,2	K562	blood:
5	chr12:33667255..33668975-chr12:33733951..33735986,2	MCF-7	breast:
6	chr12:33575316..33578004-chr12:33579015..33581251,4	MCF-7	breast:
7	chr12:33694299..33696215-chr12:33697909..33700735,2	MCF-7	breast:
8	chr12:33831200..33833987-chr12:33837460..33839264,2	K562	blood:
9	chr12:33740590..33741231-chr12:33762284..33763123,2	MCF-7	breast:
10	chr12:33916761..33918446-chr16:3069457..3072448,2	MCF-7	breast:
11	chr12:33749943..33752525-chr12:33753325..33754973,2	MCF-7	breast:
12	chr12:33663952..33667378-chr12:33671771..33674594,3	MCF-7	breast:
13	chr12:33669502..33671895-chr12:33672073..33673805,2	MCF-7	breast:
14	chr12:33735767..33737470-chr12:33737741..33739409,2	K562	blood:
15	chr12:34009182..34012663-chr12:34013902..34015537,3	MCF-7	breast:
16	chr12:33581348..33583914-chr12:33584659..33586358,3	MCF-7	breast:
17	chr12:33590905..33594094-chr12:33596140..33600356,5	MCF-7	breast:
18	chr12:33041897..33044565-chr12:33740312..33741870,2	K562	blood:
19	chr12:33851368..33853439-chr12:33854297..33856163,2	K562	blood:
20	chr12:33740467..33741676-chr12:33762290..33763074,5	MCF-7	breast:
21	chr12:33588584..33590612-chr12:33792019..33793766,2	K562	blood:
22	chr12:33807598..33810256-chr12:33811118..33813511,2	K562	blood:
23	chr12:33555550..33557717-chr12:33560120..33561805,2	K562	blood:
24	chr12:33581348..33583914-chr12:33584659..33586358,3	MCF-7	breast:
25	chr12:33571037..33573922-chr12:33575969..33577746,2	MCF-7	breast:
26	chr12:33801659..33804071-chr3:9833585..9835951,2	MCF-7	breast:
27	chr12:32908939..32909783-chr12:33758798..33759372,2	MCF-7	breast:
28	chr12:33975803..33979098-chr12:33979674..33983619,4	MCF-7	breast:
29	chr12:33757088..33759339-chr12:33761312..33763614,2	K562	blood:
30	chr12:33579807..33580648-chr12:33758471..33759360,2	MCF-7	breast:
31	chr12:33570058..33573036-chr12:33573431..33575463,2	MCF-7	breast:
32	chr12:33632921..33635641-chr12:33638680..33640584,2	K562	blood:
33	chr12:33587036..33589098-chr12:33993044..33994546,2	MCF-7	breast:
34	chr12:33785580..33788231-chr12:33795540..33797279,2	MCF-7	breast:
35	chr12:33730883..33732707-chr12:33745155..33746710,2	MCF-7	breast:
36	chr12:33825675..33828123-chr8:42750828..42752625,2	MCF-7	breast:
37	chr12:33753748..33755380-chr12:33758835..33761146,2	K562	blood:
38	chr12:33719195..33722497-chr12:33723252..33727386,3	MCF-7	breast:
39	chr12:33571037..33573922-chr12:33575969..33577746,2	MCF-7	breast:
40	chr12:33580522..33582279-chr12:33590834..33593788,2	MCF-7	breast:
41	chr12:33741049..33744622-chr12:33756451..33760061,5	MCF-7	breast:
42	chr12:33593109..33594784-chr12:33753664..33755603,2	MCF-7	breast:
43	chr12:33741049..33744622-chr12:33756451..33760061,5	MCF-7	breast:
44	chr12:34017264..34017766-chr13:48856661..48857204,2	MCF-7	breast:
45	chr12:33737682..33739227-chr12:33743519..33746177,2	K562	blood:
46	chr12:33780698..33782605-chr12:33788212..33790581,2	K562	blood:
47	chr12:33615181..33617280-chr12:33622628..33625177,2	MCF-7	breast:
48	chr12:33631092..33633580-chr12:33640097..33642228,2	MCF-7	breast:
49	chr12:33780698..33782605-chr12:33788212..33790581,2	K562	blood:
50	chr12:33828843..33831342-chr12:33831748..33833892,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PKP2-2	chr12:33579073-33579095	NONHSAT027643
2	lnc-PKP2-2	chr12:33560733-33561253	NONHSAT027643
3	lnc-ALG10-6	chr12:33870788-33871152	NONHSAT027645
4	lnc-PKP2-1	chr12:33557810-33558831	ENSG00000259937.1

No data

Variant related genes	Relation type
ENSG00000270807	TF binding region
ENSG00000265029	TF binding region
ENSG00000256070	TF binding region
ENSG00000259937	TF binding region
RNU6-472P	TF binding region
SYT10	TF binding region
RNU6-400P	TF binding region
ENSG00000270807	CpG island
ENSG00000265029	CpG island
ENSG00000256070	CpG island
ENSG00000259937	CpG island
RNU6-472P	CpG island
SYT10	CpG island
RNU6-400P	CpG island
ENSG00000120925	chromatin interactions
ENSG00000168172	chromatin interactions
ENSG00000006327	chromatin interactions
ENSG00000139131	chromatin interactions
ENSG00000110975	chromatin interactions
ENSG00000168298	chromatin interactions
ENSG00000212475	chromatin interactions
ENSG00000241553	chromatin interactions
ENSG00000250151	chromatin interactions
ENSG00000171148	chromatin interactions
ENSG00000266044	chromatin interactions
ENSG00000131931	chromatin interactions
ENSG00000184697	chromatin interactions

Extended variants
information (count: 8504 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:8504 , 50 per page) page: 1 2 3 4 5 6 7 ... 171

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566392477	chr12:33538523-33538524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs369450163	chr12:33538535-33538536	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs540568229	chr12:33538537-33538538	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs535100645	chr12:33538572-33538573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs554904907	chr12:33538614-33538615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs185420414	chr12:33538628-33538629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs373629867	chr12:33538705-33538706	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs537542826	chr12:33538719-33538720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs188636608	chr12:33538753-33538754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs578099192	chr12:33538788-33538789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs193274661	chr12:33538794-33538795	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs560790536	chr12:33538851-33538852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs574337650	chr12:33538924-33538925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs543052166	chr12:33538933-33538934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs149757364	chr12:33538960-33538961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs573880054	chr12:33538970-33538971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs145591800	chr12:33538986-33538987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs113670090	chr12:33538990-33538991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs60838684	chr12:33539098-33539099	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs183465487	chr12:33539116-33539117	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs546743078	chr12:33539130-33539131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs566441504	chr12:33539135-33539136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs146417371	chr12:33539186-33539187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs548616351	chr12:33539189-33539190	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs76455734	chr12:33539215-33539216	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs60908565	chr12:33539216-33539217	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs557584432	chr12:33539248-33539249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs541922299	chr12:33539251-33539252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs577639454	chr12:33539260-33539261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs563734746	chr12:33539264-33539265	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs534133107	chr12:33539266-33539267	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs74935194	chr12:33539278-33539279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs528362437	chr12:33539302-33539303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs574426228	chr12:33539318-33539319	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs543339021	chr12:33539345-33539346	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs142785153	chr12:33539352-33539353	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs372501547	chr12:33539353-33539354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs562897911	chr12:33539404-33539405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs374790557	chr12:33539419-33539420	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs200100682	chr12:33539424-33539425	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576340191	chr12:33539445-33539446	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs545350732	chr12:33539462-33539463	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs140943984	chr12:33539474-33539475	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs143075231	chr12:33539484-33539485	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs148153047	chr12:33539485-33539486	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs559914877	chr12:33539512-33539513	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs529181208	chr12:33539523-33539524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs112697269	chr12:33539526-33539527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs188181237	chr12:33539532-33539533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs116341551	chr12:33539549-33539550	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Acute myeloid leukemia	16864856	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Neurodevelopmental disorder	22521361	CNVD
Breast cancer	21509527	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cancer	21129771	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Chordoma	18071362	CNVD
Lung cancer	18438408	CNVD
Cancer	21272361	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Tetralogy of Fallot	22912587	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:808 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33537800-33540000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:33542600-33543000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr12:33543000-33544400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr12:33544400-33545400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr12:33566400-33575400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:33570400-33575800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:33574000-33576200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr12:33575400-33577600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr12:33575800-33578200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:33576200-33577400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:33577400-33580400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:33577600-33578400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:33578200-33588400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:33578400-33579200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:33579200-33590600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:33586800-33589800	Weak transcription	K562	blood
17	chr12:33588200-33588400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr12:33588400-33590000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:33589800-33595600	Active TSS	K562	blood
20	chr12:33590000-33590600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:33590200-33591200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr12:33590400-33590600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
23	chr12:33590400-33590600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:33590600-33590800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
25	chr12:33590600-33591000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:33590600-33591200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr12:33590600-33591200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
28	chr12:33590600-33592000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
29	chr12:33590600-33593200	Active TSS	Brain Anterior Caudate	brain
30	chr12:33590600-33593400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr12:33590800-33591000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
32	chr12:33590800-33591000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
33	chr12:33590800-33591000	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
34	chr12:33590800-33591000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
35	chr12:33590800-33591200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
36	chr12:33590800-33591400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
37	chr12:33590800-33591600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
38	chr12:33590800-33592000	Bivalent/Poised TSS	Right Atrium	heart
39	chr12:33591000-33591200	Bivalent Enhancer	Brain Angular Gyrus	brain
40	chr12:33591000-33591200	Bivalent Enhancer	Fetal Brain Male	brain
41	chr12:33591000-33591200	Bivalent Enhancer	Fetal Brain Female	brain
42	chr12:33591000-33591200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
43	chr12:33591000-33591200	Bivalent/Poised TSS	Fetal Stomach	stomach
44	chr12:33591000-33591400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:33591000-33591400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
46	chr12:33591000-33591400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr12:33591000-33591400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
48	chr12:33591000-33591400	Bivalent Enhancer	Right Ventricle	heart
49	chr12:33591000-33591600	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr12:33591000-33591600	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links