Variant report
Variant | nsv1035591 |
---|---|
Chromosome Location | chr10:19417883-19823164 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1318)
- CpG islands (count:183)
- Chromatin interactive region (count:61)
- LncRNA region (count:4)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr10:19674771-19675173 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr10:19603428-19603923 | HepG2 | liver: | n/a | n/a |
3 | ATF1 | chr10:19798150-19798313 | K562 | blood: | n/a | n/a |
4 | ATF1 | chr10:19792017-19792188 | K562 | blood: | n/a | n/a |
5 | BACH1 | chr10:19590996-19591316 | H1-hESC | embryonic stem cell: | n/a | n/a |
6 | BACH1 | chr10:19777970-19778068 | H1-hESC | embryonic stem cell: | n/a | n/a |
7 | BACH1 | chr10:19523717-19523813 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | BACH1 | chr10:19457572-19457738 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BACH1 | chr10:19591069-19591317 | K562 | blood: | n/a | n/a |
10 | BATF | chr10:19807634-19807887 | GM12878 | blood: | n/a | chr10:19807691-19807699 |
11 | BCL11A | chr10:19807647-19807851 | GM12878 | blood: | n/a | n/a |
12 | BCL11A | chr10:19431852-19432069 | GM12878 | blood: | n/a | n/a |
13 | BCL11A | chr10:19432092-19432361 | GM12878 | blood: | n/a | n/a |
14 | BHLHE40 | chr10:19436379-19436415 | GM12878 | blood: | n/a | n/a |
15 | BHLHE40 | chr10:19458718-19458920 | HepG2 | liver: | n/a | n/a |
16 | BRCA1 | chr10:19676411-19676542 | Hela-S3 | cervix: | n/a | n/a |
17 | CCNT2 | chr10:19695758-19696077 | K562 | blood: | n/a | n/a |
18 | CEBPB | chr10:19593499-19593740 | HepG2 | liver: | n/a | n/a |
19 | CEBPB | chr10:19721794-19722030 | A549 | lung: | n/a | chr10:19721890-19721907 chr10:19721888-19721905 |
20 | CEBPB | chr10:19617567-19617931 | IMR90 | lung: | n/a | chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 |
21 | CEBPB | chr10:19589005-19589242 | IMR90 | lung: | n/a | n/a |
22 | CEBPB | chr10:19621251-19621616 | Hela-S3 | cervix: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
23 | CEBPB | chr10:19721715-19722074 | HepG2 | liver: | n/a | chr10:19721890-19721907 chr10:19721888-19721905 |
24 | CEBPB | chr10:19787923-19788214 | A549 | lung: | n/a | chr10:19788093-19788106 chr10:19788094-19788105 chr10:19788093-19788106 chr10:19788093-19788104 chr10:19788093-19788106 |
25 | CEBPB | chr10:19721009-19721343 | HepG2 | liver: | n/a | chr10:19721276-19721289 chr10:19721289-19721302 chr10:19721289-19721300 chr10:19721254-19721267 chr10:19721289-19721302 |
26 | CEBPB | chr10:19710725-19711045 | IMR90 | lung: | n/a | chr10:19710892-19710903 |
27 | CEBPB | chr10:19721069-19721224 | H1-hESC | embryonic stem cell: | n/a | n/a |
28 | CEBPB | chr10:19617015-19617159 | IMR90 | lung: | n/a | chr10:19617045-19617054 chr10:19617043-19617054 |
29 | CEBPB | chr10:19685091-19685283 | HepG2 | liver: | n/a | chr10:19685122-19685133 |
30 | CEBPB | chr10:19710721-19710987 | H1-hESC | embryonic stem cell: | n/a | chr10:19710892-19710903 |
31 | CEBPB | chr10:19781460-19782153 | HepG2 | liver: | n/a | chr10:19781628-19781639 |
32 | CEBPB | chr10:19710815-19710994 | K562 | blood: | n/a | chr10:19710892-19710903 |
33 | CEBPB | chr10:19617025-19617162 | A549 | lung: | n/a | chr10:19617045-19617054 chr10:19617043-19617054 |
34 | CEBPB | chr10:19481040-19481301 | IMR90 | lung: | n/a | chr10:19481196-19481207 |
35 | CEBPB | chr10:19737802-19737993 | HepG2 | liver: | n/a | chr10:19737941-19737954 chr10:19737943-19737952 chr10:19737943-19737954 |
36 | CEBPB | chr10:19770776-19771101 | HepG2 | liver: | n/a | n/a |
37 | CEBPB | chr10:19653229-19653328 | IMR90 | lung: | n/a | chr10:19653266-19653279 chr10:19653266-19653279 chr10:19653268-19653279 chr10:19653266-19653279 chr10:19653268-19653279 |
38 | CEBPB | chr10:19617562-19617902 | MCF-7 | breast: | n/a | chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 |
39 | CEBPB | chr10:19781986-19782089 | K562 | blood: | n/a | n/a |
40 | CEBPB | chr10:19498249-19498750 | MCF-7 | breast: | n/a | n/a |
41 | CEBPB | chr10:19617561-19617954 | Hela-S3 | cervix: | n/a | chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 |
42 | CEBPB | chr10:19674826-19675024 | HepG2 | liver: | n/a | chr10:19674953-19674964 |
43 | CEBPB | chr10:19621246-19621602 | K562 | blood: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
44 | CEBPB | chr10:19621212-19621668 | MCF-7 | breast: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
45 | CEBPB | chr10:19481079-19481325 | HepG2 | liver: | n/a | chr10:19481196-19481207 |
46 | CEBPB | chr10:19721050-19721310 | IMR90 | lung: | n/a | chr10:19721276-19721289 chr10:19721289-19721302 chr10:19721289-19721300 chr10:19721254-19721267 chr10:19721289-19721302 |
47 | CEBPB | chr10:19617569-19617929 | HepG2 | liver: | n/a | chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 chr10:19617751-19617760 |
48 | CEBPB | chr10:19621239-19621618 | HepG2 | liver: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
49 | CEBPB | chr10:19621307-19621498 | HepG2 | liver: | n/a | chr10:19621417-19621430 chr10:19621418-19621429 chr10:19621419-19621428 chr10:19621417-19621428 |
50 | CEBPB | chr10:19758519-19758826 | HepG2 | liver: | n/a | chr10:19758672-19758683 |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:19540759-19540809 | HepG2 | liver: | n/a |
2 | chr10:19705290-19705340 | AG09309 | skin: | n/a |
3 | chr10:19778008-19778058 | Jurkat | blood: | n/a |
4 | chr10:19778008-19778058 | HNPCEpiC | eye: | n/a |
5 | chr10:19778008-19778058 | HEK293 | kidney: | embryo |
6 | chr10:19540759-19540809 | HCPEpiC | choroid plexus: | n/a |
7 | chr10:19540759-19540809 | Hepatocyte | liver: | n/a |
8 | chr10:19540759-19540809 | AG09319 | gingival: | n/a |
9 | chr10:19778008-19778058 | AG04449 | skin: | fetal |
10 | chr10:19540759-19540809 | NHBE | bronchial: | n/a |
11 | chr10:19778008-19778058 | HRPEpiC | eye: | n/a |
12 | chr10:19778008-19778058 | SK-N-MC | brain: | n/a |
13 | chr10:19540759-19540809 | MCF10A-Er-Src | breast: | n/a |
14 | chr10:19778008-19778058 | PFSK-1 | brain: | n/a |
15 | chr10:19540759-19540809 | NB4 | blood: | n/a |
16 | chr10:19778008-19778058 | MCF10A-Er-Src | breast: | n/a |
17 | chr10:19705290-19705340 | GM19239 | blood: | n/a |
18 | chr10:19705290-19705340 | AG04449 | skin: | fetal |
19 | chr10:19540759-19540809 | H1-hESC | embryonic stem cell: | embryo |
20 | chr10:19778008-19778058 | Caco-2 | colon: | n/a |
21 | chr10:19705290-19705340 | SK-N-SH | brain: | n/a |
22 | chr10:19778008-19778058 | H1-hESC | embryonic stem cell: | embryo |
23 | chr10:19778008-19778058 | GM12878 | blood: | n/a |
24 | chr10:19705290-19705340 | HCM | heart: | n/a |
25 | chr10:19778008-19778058 | LNCaP | prostate: | n/a |
26 | chr10:19778008-19778058 | GM19239 | blood: | n/a |
27 | chr10:19778008-19778058 | AoSMC | blood vessel: | n/a |
28 | chr10:19778008-19778058 | NHBE | bronchial: | n/a |
29 | chr10:19540759-19540809 | SK-N-MC | brain: | n/a |
30 | chr10:19705290-19705340 | Jurkat | blood: | n/a |
31 | chr10:19540759-19540809 | SKMC | muscle: | n/a |
32 | chr10:19778008-19778058 | HRCEpiC | kidney: | n/a |
33 | chr10:19540759-19540809 | T-47D | breast: | n/a |
34 | chr10:19778008-19778058 | GM12892 | blood: | n/a |
35 | chr10:19540759-19540809 | PFSK-1 | brain: | n/a |
36 | chr10:19778008-19778058 | U87 | brain: | n/a |
37 | chr10:19705290-19705340 | AoSMC | blood vessel: | n/a |
38 | chr10:19705290-19705340 | GM12891 | blood: | n/a |
39 | chr10:19540759-19540809 | SK-N-SH_RA | brain: | n/a |
40 | chr10:19705290-19705340 | AG04450 | lung: | fetal |
41 | chr10:19705290-19705340 | NH-A | brain: | n/a |
42 | chr10:19540759-19540809 | A549 | lung: | n/a |
43 | chr10:19705290-19705340 | HRCEpiC | kidney: | n/a |
44 | chr10:19778008-19778058 | HMEC | breast: | n/a |
45 | chr10:19705290-19705340 | HepG2 | liver: | n/a |
46 | chr10:19705290-19705340 | T-47D | breast: | n/a |
47 | chr10:19540759-19540809 | ProgFib | skin: | n/a |
48 | chr10:19705290-19705340 | PFSK-1 | brain: | n/a |
49 | chr10:19705290-19705340 | SAEC | small airway: | n/a |
50 | chr10:19540759-19540809 | AoSMC | blood vessel: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr10:19814024..19815559-chr10:19817040..19818969,2 | K562 | blood: | |
2 | chr10:19785625..19787709-chr10:19788365..19791040,2 | MCF-7 | breast: | |
3 | chr10:19781369..19782958-chr10:19786296..19789278,2 | MCF-7 | breast: | |
4 | chr10:19510172..19510750-chr10:19521065..19522003,2 | MCF-7 | breast: | |
5 | chr10:19769588..19771872-chr10:19775105..19777621,2 | K562 | blood: | |
6 | chr10:19544299..19547180-chr10:19549327..19551757,2 | MCF-7 | breast: | |
7 | chr10:19547526..19550166-chr10:19551019..19552884,2 | MCF-7 | breast: | |
8 | chr10:19806044..19808111-chr10:19811941..19813567,2 | K562 | blood: | |
9 | chr10:19502635..19505234-chr10:19507325..19509106,2 | MCF-7 | breast: | |
10 | chr10:19610336..19613284-chr14:35868183..35870740,2 | MCF-7 | breast: | |
11 | chr10:19510172..19510750-chr10:19521065..19522003,2 | MCF-7 | breast: | |
12 | chr10:19419930..19422122-chr10:19424808..19427231,2 | K562 | blood: | |
13 | chr10:19466484..19467327-chr10:19521039..19521911,3 | MCF-7 | breast: | |
14 | chr10:19784572..19786146-chr10:19787649..19789922,2 | MCF-7 | breast: | |
15 | chr10:19784572..19786146-chr10:19787649..19789922,2 | MCF-7 | breast: | |
16 | chr10:19082548..19083519-chr10:19457655..19458211,2 | MCF-7 | breast: | |
17 | chr10:19702800..19704977-chr10:19710060..19711569,2 | MCF-7 | breast: | |
18 | chr10:19590664..19593584-chr10:19602792..19604860,2 | K562 | blood: | |
19 | chr10:19497233..19499735-chr10:19518305..19520335,2 | MCF-7 | breast: | |
20 | chr10:19806044..19808111-chr10:19811941..19813567,2 | K562 | blood: | |
21 | chr10:19701583..19703629-chr10:19722720..19725656,2 | MCF-7 | breast: | |
22 | chr10:19551633..19554617-chr10:19556322..19558693,2 | K562 | blood: | |
23 | chr10:19466484..19467327-chr10:19521039..19521911,3 | MCF-7 | breast: | |
24 | chr10:19551633..19554617-chr10:19556322..19558693,2 | K562 | blood: | |
25 | chr10:19466484..19467332-chr10:19521028..19521911,4 | MCF-7 | breast: | |
26 | chr10:19598040..19600371-chr10:19601058..19603498,2 | MCF-7 | breast: | |
27 | chr10:19701583..19703629-chr10:19722720..19725656,2 | MCF-7 | breast: | |
28 | chr10:19724105..19725802-chr10:19728835..19730495,2 | K562 | blood: | |
29 | chr10:18978169..18978867-chr10:19699824..19700403,3 | MCF-7 | breast: | |
30 | chr10:19644040..19646101-chr10:19646355..19648931,2 | MCF-7 | breast: | |
31 | chr10:19534164..19535892-chr10:19543312..19545061,2 | MCF-7 | breast: | |
32 | chr10:19496117..19498249-chr10:19507924..19510695,2 | MCF-7 | breast: | |
33 | chr10:19704403..19706854-chr10:20104452..20106050,2 | MCF-7 | breast: | |
34 | chr10:19497233..19499735-chr10:19518305..19520335,2 | MCF-7 | breast: | |
35 | chr10:19598040..19600371-chr10:19601058..19603498,2 | MCF-7 | breast: | |
36 | chr10:19547526..19550166-chr10:19551019..19552884,2 | MCF-7 | breast: | |
37 | chr10:19813535..19816224-chr10:19819107..19822084,2 | MCF-7 | breast: | |
38 | chr10:19578194..19580695-chr10:19582089..19585004,2 | K562 | blood: | |
39 | chr10:19419930..19422122-chr10:19424808..19427231,2 | K562 | blood: | |
40 | chr10:19709784..19712687-chr10:19713625..19715285,2 | K562 | blood: | |
41 | chr10:19544299..19547180-chr10:19549327..19551757,2 | MCF-7 | breast: | |
42 | chr10:19814024..19815559-chr10:19817040..19818969,2 | K562 | blood: | |
43 | chr10:19709784..19712687-chr10:19713625..19715285,2 | K562 | blood: | |
44 | chr10:19458075..19458575-chr18:36304626..36305400,2 | MCF-7 | breast: | |
45 | chr10:19776078..19778713-chr10:19790449..19792992,2 | K562 | blood: | |
46 | chr10:19813535..19816224-chr10:19819107..19822084,2 | MCF-7 | breast: | |
47 | chr10:19424011..19426061-chr10:19435541..19437655,2 | K562 | blood: | |
48 | chr10:19701065..19702056-chr10:20076746..20077511,2 | MCF-7 | breast: | |
49 | chr10:19424011..19426061-chr10:19435541..19437655,2 | K562 | blood: | |
50 | chr10:19496117..19498249-chr10:19507924..19510695,2 | MCF-7 | breast: |
(count:4 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-NSUN6-6 | chr10:19580351-19580409 | XLOC_008744 |
2 | lnc-NSUN6-6 | chr10:19579152-19579395 | XLOC_008744 |
3 | lnc-PLXDC2-6 | chr10:19778030-19778329 | NONHSAT011661 |
4 | lnc-NSUN6-7 | chr10:19780001-19780228 | NONHSAT011662 |
No data |
No data |
Variant related genes | Relation type |
---|---|
MALRD1 | TF binding region |
ENSG00000236960 | TF binding region |
HMGN1P20 | TF binding region |
ENSG00000227734 | TF binding region |
MALRD1 | CpG island |
ENSG00000236960 | CpG island |
HMGN1P20 | CpG island |
ENSG00000227734 | CpG island |
ENSG00000120594 | chromatin interactions |
ENSG00000204740 | chromatin interactions |
ENSG00000227734 | chromatin interactions |
ENSG00000239539 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs533824595 | chr10:19417898-19417899 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs370558904 | chr10:19417931-19417932 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs139198391 | chr10:19417951-19417952 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs374782939 | chr10:19417987-19417988 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs548897063 | chr10:19417998-19417999 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs564290069 | chr10:19417999-19418000 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs531440189 | chr10:19418002-19418003 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs530823423 | chr10:19418024-19418025 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs77688506 | chr10:19418068-19418069 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs568186837 | chr10:19418108-19418109 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs371262066 | chr10:19418124-19418125 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs550161345 | chr10:19418145-19418146 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs562092130 | chr10:19418233-19418234 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs368426185 | chr10:19418244-19418245 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs377009511 | chr10:19418264-19418265 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs7920571 | chr10:19418275-19418276 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs181587951 | chr10:19418285-19418286 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs565417635 | chr10:19418310-19418311 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs185850343 | chr10:19418326-19418327 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs149547295 | chr10:19418330-19418331 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs77283973 | chr10:19418381-19418382 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs550655558 | chr10:19418420-19418421 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs537094757 | chr10:19418448-19418449 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs555362005 | chr10:19418450-19418451 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs190275862 | chr10:19418490-19418491 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs570973129 | chr10:19418517-19418518 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs181078907 | chr10:19418533-19418534 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs12252510 | chr10:19418567-19418568 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | mRNA abundance |
29 | rs186031880 | chr10:19418568-19418569 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs374825300 | chr10:19418578-19418579 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs114087924 | chr10:19418598-19418599 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs564607590 | chr10:19418603-19418604 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs148718422 | chr10:19418610-19418611 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs543840817 | chr10:19418627-19418628 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs562030992 | chr10:19418674-19418675 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs111998645 | chr10:19418685-19418686 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs529573195 | chr10:19418702-19418703 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs372847250 | chr10:19418729-19418730 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs116203292 | chr10:19418769-19418770 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs190979754 | chr10:19418823-19418824 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs533572449 | chr10:19418860-19418861 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs34413523 | chr10:19418866-19418867 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs371269146 | chr10:19418867-19418868 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs397787382 | chr10:19418880-19418881 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs184022478 | chr10:19418881-19418882 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs569771464 | chr10:19418911-19418912 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs577620455 | chr10:19418939-19418940 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs147899012 | chr10:19418963-19418964 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs530409259 | chr10:19418968-19418969 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs549025689 | chr10:19418973-19418974 | Strong transcription Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Medulloblastoma | 16783165 | CNVD |
Breast cancer | 17133270 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Breast cancer | 17603634 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Pancreatic endocrine tumor | 17639061 | CNVD |
Gastric cancer | 17908304 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Melanoma | 18172304 | CNVD |
Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
Lung cancer | 18438408 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Oral cancer | 21386901 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Breast cancer | 21858162 | CNVD |
Acute lymphoblastic leukemia | 20724749 | CNVD |
Autism | 22495311 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Intracranial aneurysm | 16715129 | CNVD |
Cutaneous T-cell lymphoma | 21881587 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Multiple myeloma | 16616336 | CNVD |
T-cell lymphomas | 19863542 | CNVD |
Esophageal cancer | 21851588 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Epilepsy | 22083797 | CNVD |
Olfactory neuroblastoma | 18408657 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Breast cancer | 21364760 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Breast cancer | 22522925 | CNVD |
Cancer | 20164919 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Acute lymphoblastic leukemia | 18458336 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr10:19413600-19424000 | Weak transcription | Fetal Intestine Small | intestine |
2 | chr10:19414800-19434800 | Weak transcription | Small Intestine | intestine |
3 | chr10:19415800-19419400 | Strong transcription | Duodenum Mucosa | Duodenum |
4 | chr10:19417200-19419400 | Strong transcription | Fetal Intestine Large | intestine |
5 | chr10:19419400-19422800 | Weak transcription | Duodenum Mucosa | Duodenum |
6 | chr10:19419400-19425600 | Weak transcription | Fetal Intestine Large | intestine |
7 | chr10:19422600-19423200 | Enhancers | HUES48 Cell Line | embryonic stem cell |
8 | chr10:19422600-19423400 | Enhancers | HUES64 Cell Line | embryonic stem cell |
9 | chr10:19422800-19423600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
10 | chr10:19422800-19423600 | Strong transcription | Duodenum Mucosa | Duodenum |
11 | chr10:19423000-19423200 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
12 | chr10:19423200-19423600 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
13 | chr10:19423600-19425600 | Weak transcription | Duodenum Mucosa | Duodenum |
14 | chr10:19424000-19424600 | Strong transcription | Fetal Intestine Small | intestine |
15 | chr10:19424600-19425000 | Weak transcription | Fetal Intestine Small | intestine |
16 | chr10:19425000-19426600 | Strong transcription | Fetal Intestine Small | intestine |
17 | chr10:19425600-19426200 | Strong transcription | Duodenum Mucosa | Duodenum |
18 | chr10:19425600-19430400 | Strong transcription | Fetal Intestine Large | intestine |
19 | chr10:19426200-19428400 | Weak transcription | Duodenum Mucosa | Duodenum |
20 | chr10:19426600-19436000 | Weak transcription | Fetal Intestine Small | intestine |
21 | chr10:19428400-19430400 | Strong transcription | Duodenum Mucosa | Duodenum |
22 | chr10:19428600-19429000 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
23 | chr10:19430400-19432000 | Weak transcription | Duodenum Mucosa | Duodenum |
24 | chr10:19430400-19435000 | Weak transcription | Fetal Intestine Large | intestine |
25 | chr10:19432000-19433400 | Strong transcription | Duodenum Mucosa | Duodenum |
26 | chr10:19433400-19434800 | Weak transcription | Duodenum Mucosa | Duodenum |
27 | chr10:19434800-19435000 | Enhancers | Small Intestine | intestine |
28 | chr10:19434800-19437200 | Strong transcription | Duodenum Mucosa | Duodenum |
29 | chr10:19435000-19439600 | Strong transcription | Fetal Intestine Large | intestine |
30 | chr10:19435200-19435400 | Enhancers | Fetal Kidney | kidney |
31 | chr10:19436000-19438400 | Strong transcription | Fetal Intestine Small | intestine |
32 | chr10:19436400-19436800 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
33 | chr10:19437200-19438800 | Weak transcription | Duodenum Mucosa | Duodenum |
34 | chr10:19438400-19489000 | Weak transcription | Fetal Intestine Small | intestine |
35 | chr10:19438800-19439800 | Strong transcription | Duodenum Mucosa | Duodenum |
36 | chr10:19439600-19440800 | Weak transcription | Fetal Intestine Large | intestine |
37 | chr10:19439800-19443400 | Weak transcription | Duodenum Mucosa | Duodenum |
38 | chr10:19440800-19441200 | Strong transcription | Fetal Intestine Large | intestine |
39 | chr10:19441200-19442400 | Weak transcription | Fetal Intestine Large | intestine |
40 | chr10:19442400-19446200 | Strong transcription | Fetal Intestine Large | intestine |
41 | chr10:19443400-19446000 | Strong transcription | Duodenum Mucosa | Duodenum |
42 | chr10:19444000-19444800 | Enhancers | Fetal Lung | lung |
43 | chr10:19446000-19450600 | Weak transcription | Duodenum Mucosa | Duodenum |
44 | chr10:19446200-19446800 | Weak transcription | Fetal Intestine Large | intestine |
45 | chr10:19446800-19447000 | Strong transcription | Fetal Intestine Large | intestine |
46 | chr10:19447000-19447400 | Weak transcription | Fetal Intestine Large | intestine |
47 | chr10:19447400-19448800 | Strong transcription | Fetal Intestine Large | intestine |
48 | chr10:19448400-19448800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |
49 | chr10:19448800-19454600 | Weak transcription | Fetal Intestine Large | intestine |
50 | chr10:19450600-19451000 | Strong transcription | Duodenum Mucosa | Duodenum |