Variant report

Variant	nsv1035611
Chromosome Location	chr10:57577564-57762083
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:57747558..57749260-chr10:57921516..57923175,2	MCF-7	breast:
2	chr10:57624031..57627084-chr10:57627386..57630706,3	K562	blood:
3	chr10:57717449..57719826-chr10:58113141..58115181,2	K562	blood:
4	chr10:57689140..57691906-chr10:57693909..57695941,3	K562	blood:
5	chr10:57714459..57717334-chr10:57718560..57721356,2	K562	blood:
6	chr10:57714459..57717334-chr10:57718560..57721356,2	K562	blood:
7	chr10:57689140..57691906-chr10:57693909..57695941,3	K562	blood:
8	chr10:57748719..57749535-chr10:57876195..57877022,4	MCF-7	breast:
9	chr10:57755531..57757629-chr14:20811264..20812832,2	MCF-7	breast:
10	chr10:55961337..55963211-chr10:57586910..57589588,2	K562	blood:
11	chr10:57746592..57749487-chr10:57834078..57836757,2	K562	blood:
12	chr10:57757077..57758579-chr10:57764722..57766777,2	MCF-7	breast:
13	chr10:57624031..57627084-chr10:57627386..57630706,3	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTRNR2L5-6	chr10:57728955-57729220	l_316_chr10:57728954-57743287_hela
2	lnc-MTRNR2L5-6	chr10:57742833-57743287	l_316_chr10:57728954-57743287_hela
3	lnc-MTRNR2L5-6	chr10:57732679-57732829	l_316_chr10:57728954-57743287_hela
4	lnc-MTRNR2L5-6	chr10:57742028-57742255	l_316_chr10:57728954-57743287_hela

No data

Variant related genes	Relation type
ENSG00000129484	chromatin interactions
ENSG00000259001	chromatin interactions

Extended variants
information (count: 1484 )
Associated
traits (count: 64 )

Variant overlapped rSNPs/rCNVs (count:1484 , 50 per page) page: 1 2 3 4 5 6 7 ... 30

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs146352682	chr10:57577592-57577593	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs182246991	chr10:57577630-57577631	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs539715646	chr10:57577632-57577633	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs186558992	chr10:57577666-57577667	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs569827530	chr10:57577676-57577677	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs535294663	chr10:57577695-57577696	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs75829498	chr10:57577710-57577711	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs191187355	chr10:57577725-57577726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs80183263	chr10:57577749-57577750	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs182651827	chr10:57577750-57577751	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs557362809	chr10:57577866-57577867	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs577242135	chr10:57577916-57577917	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs188222973	chr10:57577925-57577926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs192996490	chr10:57577961-57577962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs1338805	chr10:57577963-57577964	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs542095897	chr10:57577995-57577996	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs531274186	chr10:57577998-57577999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs567316121	chr10:57578004-57578005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs541230035	chr10:57578042-57578043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs562192637	chr10:57578050-57578051	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs115949659	chr10:57578054-57578055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs112541795	chr10:57578095-57578096	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs547933807	chr10:57578165-57578166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs4935609	chr10:57578216-57578217	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs185094699	chr10:57578245-57578246	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs78968845	chr10:57578252-57578253	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs541828385	chr10:57578293-57578294	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs562018847	chr10:57578308-57578309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs80105825	chr10:57578351-57578352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs76282317	chr10:57578357-57578358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs117586739	chr10:57578364-57578365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs77138746	chr10:57578386-57578387	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs80155386	chr10:57578388-57578389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs146580280	chr10:57578396-57578397	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs4935610	chr10:57578424-57578425	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs190430067	chr10:57578444-57578445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs192408606	chr10:57578448-57578449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs531205156	chr10:57578496-57578497	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs4935611	chr10:57578500-57578501	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs183880826	chr10:57578521-57578522	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs576696052	chr10:57578546-57578547	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs115385643	chr10:57578553-57578554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188405561	chr10:57578577-57578578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs180830765	chr10:57578626-57578627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs76576315	chr10:57578628-57578629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs115350860	chr10:57578673-57578674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201759075	chr10:57578717-57578718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs36060802	chr10:57578723-57578724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs528793287	chr10:57578725-57578726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs543879518	chr10:57578775-57578776	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:64)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Autism	20858243	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
small cell lung cancer	17426248	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	18511947	CNVD

Chromatin state (count:188 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57574400-57582200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:57576400-57577800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr10:57576800-57577800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr10:57577400-57582200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:57577800-57579200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr10:57577800-57581400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr10:57578800-57579000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:57578800-57579200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr10:57578800-57580000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:57578800-57580200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr10:57579000-57579600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr10:57579200-57580000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr10:57579200-57582000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr10:57579200-57582200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:57579200-57582600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:57579400-57579600	Enhancers	H9 Cell Line	embryonic stem cell
17	chr10:57579600-57580200	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr10:57579600-57580400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:57580000-57580400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr10:57580000-57580600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr10:57580200-57580400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr10:57580200-57580600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr10:57580400-57580600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr10:57580400-57582200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr10:57580400-57582400	Enhancers	H9 Cell Line	embryonic stem cell
26	chr10:57580600-57581000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr10:57580600-57581400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr10:57580600-57582600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr10:57581000-57581800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr10:57581200-57581400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:57581200-57581800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:57581400-57581600	Enhancers	H1 Cell Line	embryonic stem cell
33	chr10:57581400-57581800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:57581400-57582600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr10:57581600-57582000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr10:57581800-57582200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr10:57581800-57582200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:57582000-57582400	Enhancers	H1 Cell Line	embryonic stem cell
39	chr10:57582000-57582600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:57582200-57582400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:57582200-57582600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
42	chr10:57582200-57583000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
43	chr10:57582400-57582600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:57582600-57582800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr10:57582600-57584400	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr10:57594400-57594800	Active TSS	Liver	Liver
47	chr10:57616800-57618000	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr10:57617000-57617800	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr10:57617000-57617800	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr10:57617200-57617600	Enhancers	HUES6 Cell Line	embryonic stem cell

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