Variant report

Variant	nsv1035713
Chromosome Location	chr10:56775235-57063346
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:56851202..56852127-chr10:57023430..57024403,6	MCF-7	breast:
2	chr10:56851202..56852127-chr10:57023430..57024403,6	MCF-7	breast:
3	chr10:56856112..56857067-chr10:57023573..57024305,2	MCF-7	breast:
4	chr10:56856112..56857067-chr10:57023573..57024305,2	MCF-7	breast:
5	chr10:55757466..55757977-chr10:57022925..57023910,2	MCF-7	breast:
6	chr10:56802881..56805062-chr10:56805603..56807529,2	K562	blood:
7	chr10:56848923..56849830-chr22:31212899..31213539,2	MCF-7	breast:
8	chr10:56926801..56928606-chr10:56934525..56937343,2	K562	blood:
9	chr10:57012609..57015608-chr6:34209555..34212466,2	K562	blood:
10	chr10:57045296..57046208-chr13:38876652..38877471,2	MCF-7	breast:
11	chr10:56926801..56928606-chr10:56934525..56937343,2	K562	blood:
12	chr10:56930146..56932824-chr10:56934216..56936608,2	K562	blood:
13	chr10:57046815..57047629-chr10:57390561..57391169,3	MCF-7	breast:
14	chr10:57046804..57047423-chr10:57260630..57261301,2	MCF-7	breast:
15	chr10:56860242..56861881-chr10:56864566..56866178,2	K562	blood:
16	chr10:56802881..56805062-chr10:56805603..56807529,2	K562	blood:
17	chr10:56860242..56861881-chr10:56864566..56866178,2	K562	blood:
18	chr10:56930146..56932824-chr10:56934216..56936608,2	K562	blood:
19	chr10:57047149..57047763-chr10:57389634..57390254,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZWINT-4	chr10:57007508-57007648	ENSG00000236744.1
2	lnc-ZWINT-4	chr10:57007515-57007648	ENSG00000236744.2

No data

Extended variants
information (count: 2831 )
Associated
traits (count: 73 )

Variant overlapped rSNPs/rCNVs (count:2831 , 50 per page) page: 1 2 3 4 5 6 7 ... 57

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs34127164	chr10:56778318-56778319	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs559210986	chr10:56778389-56778390	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs369881298	chr10:56778407-56778408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs183111363	chr10:56778450-56778451	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs554626850	chr10:56778480-56778481	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs574813870	chr10:56778487-56778488	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs116619344	chr10:56778561-56778562	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs563943905	chr10:56778566-56778567	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs576944569	chr10:56778571-56778572	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs545568021	chr10:56778637-56778638	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs531411567	chr10:56778672-56778673	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs79057478	chr10:56778684-56778685	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs111670961	chr10:56778692-56778693	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs115926007	chr10:56778716-56778717	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs78141065	chr10:56778727-56778728	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs188192391	chr10:56778882-56778883	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs190730876	chr10:56778894-56778895	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs543184517	chr10:56778896-56778897	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs138058087	chr10:56778908-56778909	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs562318504	chr10:56778949-56778950	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs182868783	chr10:56778950-56778951	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs145479228	chr10:56778973-56778974	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs202031727	chr10:56778976-56778977	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs200172022	chr10:56778977-56778978	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs376301707	chr10:56778979-56778980	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs570495010	chr10:56779071-56779072	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs533081184	chr10:56779074-56779075	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs368409880	chr10:56779098-56779099	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs552756328	chr10:56779100-56779101	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs550274301	chr10:56779101-56779102	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs569481970	chr10:56779120-56779121	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs78519022	chr10:56779123-56779124	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs538528999	chr10:56779162-56779163	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs376980383	chr10:56779180-56779181	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs76349715	chr10:56779181-56779182	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs1922152	chr10:56779198-56779199	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs200935406	chr10:56779209-56779210	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187941398	chr10:56779214-56779215	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs547617027	chr10:56779238-56779239	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs576881997	chr10:56779239-56779240	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs554268231	chr10:56779253-56779254	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs114310194	chr10:56779283-56779284	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs374925657	chr10:56779295-56779296	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs555934124	chr10:56779318-56779319	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs574069990	chr10:56779325-56779326	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs541737933	chr10:56779341-56779342	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs527484081	chr10:56779380-56779381	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs562050262	chr10:56779392-56779393	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs527608340	chr10:56779394-56779395	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs149507648	chr10:56779493-56779494	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:73)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Colorectal cancer	16774939	CNVD
Autism	20858243	CNVD
Breast cancer	22522925	CNVD
Usher type I cohort	17277737	CNVD
Usher type I cohort	21436283	CNVD
Leukemia	21357790	CNVD
Medulloblastoma	22832581	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	17426248	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:182 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56778200-56780600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:56778600-56778800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:56778800-56780000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:56779000-56779400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:56779200-56779600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:56779200-56779600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:56779200-56779800	Enhancers	Fetal Lung	lung
8	chr10:56779600-56784600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:56780000-56780400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:56780400-56784400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:56780600-56784200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:56784200-56785200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:56784400-56785000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:56784400-56785000	Enhancers	Brain Cingulate Gyrus	brain
15	chr10:56784400-56785000	Enhancers	Fetal Heart	heart
16	chr10:56784400-56785200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:56784600-56785200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr10:56785200-56786200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:56786400-56786600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:56791800-56793000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr10:56793000-56793200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:56793200-56793400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:56793600-56794400	Enhancers	HUVEC	blood vessel
24	chr10:56799000-56799400	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr10:56807800-56809400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:56808200-56809200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:56808400-56809200	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr10:56808400-56809400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:56808600-56809200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr10:56808800-56809200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr10:56808800-56809200	Enhancers	Brain Germinal Matrix	brain
32	chr10:56809000-56809200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr10:56824000-56825800	Enhancers	HepG2	liver
34	chr10:56840400-56841000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:56840800-56841200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr10:56841000-56841200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:56841200-56849000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:56847200-56847600	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr10:56849000-56849200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:56849000-56849200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:56849200-56849400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:56859800-56860200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:56868400-56868800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:56868600-56869000	Enhancers	HMEC	breast
45	chr10:56901200-56901800	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr10:56903200-56903800	Enhancers	HMEC	breast
47	chr10:56903400-56904400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:56903400-56906400	Enhancers	HUVEC	blood vessel
49	chr10:56903800-56904200	Flanking Active TSS	HMEC	breast
50	chr10:56904000-56904400	Enhancers	Hela-S3	cervix

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