Variant report

Variant	nsv1036058
Chromosome Location	chr10:92471568-92605364
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:92513228..92514172-chr10:92622355..92622930,2	MCF-7	breast:
2	chr10:92510904..92511887-chr10:92547546..92548208,2	MCF-7	breast:
3	chr10:92510928..92512332-chr10:92630672..92631466,5	MCF-7	breast:
4	chr10:92598913..92601766-chr10:92601861..92603826,2	K562	blood:
5	chr10:92543492..92547102-chr10:92549705..92553165,3	K562	blood:
6	chr10:92598913..92601766-chr10:92601861..92603826,2	K562	blood:
7	chr10:92437999..92438515-chr10:92472507..92473297,2	MCF-7	breast:
8	chr10:92539122..92539997-chr10:92622412..92623352,3	K562	blood:
9	chr10:92549685..92552502-chr10:92554201..92556033,3	K562	blood:
10	chr10:92481423..92483084-chr10:92487881..92490000,2	MCF-7	breast:
11	chr10:92501868..92504163-chr10:92504475..92507268,2	K562	blood:
12	chr10:92543492..92547102-chr10:92549705..92553165,3	K562	blood:
13	chr10:91907918..91908914-chr10:92477743..92478315,2	MCF-7	breast:
14	chr10:92511236..92511850-chr10:92630669..92631482,2	K562	blood:
15	chr10:92481423..92483084-chr10:92487881..92490000,2	MCF-7	breast:
16	chr10:92547996..92549557-chr10:92549602..92552195,2	K562	blood:
17	chr10:92510876..92511819-chr10:92622380..92623098,6	K562	blood:
18	chr10:92510904..92511887-chr10:92547546..92548208,2	MCF-7	breast:
19	chr10:92547332..92548353-chr10:92622125..92623330,4	MCF-7	breast:
20	chr10:92605355..92608309-chr10:92609468..92612446,2	MCF-7	breast:
21	chr10:92501868..92504163-chr10:92504475..92507268,2	K562	blood:
22	chr10:92510841..92511818-chr10:92622320..92623307,5	MCF-7	breast:
23	chr10:92547996..92549557-chr10:92549602..92552195,2	K562	blood:
24	chr10:92549685..92552502-chr10:92554201..92556033,3	K562	blood:
25	chr10:92510777..92511813-chr10:92622355..92623374,9	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000148688	chromatin interactions

Extended variants
information (count: 5007 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:5007 , 50 per page) page: 1 2 3 4 5 6 7 ... 101

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551365346	chr10:92471573-92471574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs180807674	chr10:92471611-92471612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs527573905	chr10:92471707-92471708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs368016518	chr10:92471719-92471720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs567452311	chr10:92471814-92471815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs536406781	chr10:92471853-92471854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs61857704	chr10:92471860-92471861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs549581381	chr10:92471888-92471889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs569789528	chr10:92471899-92471900	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs1936621	chr10:92471984-92471985	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs139953033	chr10:92472004-92472005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs566107426	chr10:92472031-92472032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs186384393	chr10:92472068-92472069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs1936620	chr10:92472084-92472085	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs535811919	chr10:92472103-92472104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs200131525	chr10:92472138-92472139	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs192034553	chr10:92472202-92472203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs543995276	chr10:92472230-92472231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs557609807	chr10:92472280-92472281	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs11186282	chr10:92472343-92472344	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs371575720	chr10:92472391-92472392	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs145830116	chr10:92472413-92472414	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs564716164	chr10:92472439-92472440	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs562766974	chr10:92472504-92472505	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs12259754	chr10:92472510-92472511	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs540681250	chr10:92472551-92472552	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs561203023	chr10:92472552-92472553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs529962285	chr10:92472554-92472555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs12244858	chr10:92472559-92472560	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs1419355	chr10:92472561-92472562	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs532462095	chr10:92472565-92472566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs79972388	chr10:92472622-92472623	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs182257402	chr10:92472623-92472624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs375211136	chr10:92472639-92472640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs139678766	chr10:92472642-92472643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs554679565	chr10:92472668-92472669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs144066204	chr10:92472708-92472709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs12570123	chr10:92472727-92472728	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs114856903	chr10:92472730-92472731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs567782893	chr10:92472746-92472747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs540099955	chr10:92472752-92472753	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs12259882	chr10:92472755-92472756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs546423707	chr10:92472759-92472760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs374429378	chr10:92472769-92472770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs201011128	chr10:92472770-92472771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs3030191	chr10:92472778-92472779	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs10551454	chr10:92472781-92472782	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs373084911	chr10:92472788-92472789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs558583048	chr10:92472808-92472809	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs12570136	chr10:92472852-92472853	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:626 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92469200-92483000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr10:92469800-92483200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:92475400-92476000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:92475400-92476000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:92475400-92476000	Enhancers	NHEK	skin
6	chr10:92476400-92476600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr10:92476600-92483200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr10:92482600-92484200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:92482600-92484200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr10:92482600-92484400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr10:92482600-92484400	Enhancers	Fetal Thymus	thymus
12	chr10:92482600-92485000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:92482600-92485800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:92482800-92483400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:92482800-92483600	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr10:92482800-92484000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:92482800-92484000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr10:92482800-92484200	Enhancers	Primary T cells from cord blood	blood
19	chr10:92482800-92485800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:92482800-92486000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr10:92482800-92486400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr10:92483000-92486000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr10:92483000-92486000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:92483200-92483800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:92483200-92483800	Enhancers	Thymus	Thymus
26	chr10:92483200-92484000	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:92483200-92484200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:92483200-92484200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:92483200-92484200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:92483200-92484200	Enhancers	NHEK	skin
31	chr10:92483200-92484400	Enhancers	H9 Cell Line	embryonic stem cell
32	chr10:92483200-92484400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:92483200-92484400	Enhancers	HMEC	breast
34	chr10:92483200-92486200	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr10:92483600-92486000	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr10:92483800-92484000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:92484000-92485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:92484400-92488400	Weak transcription	Fetal Thymus	thymus
39	chr10:92484400-92494600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr10:92485000-92485800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr10:92485000-92485800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:92485800-92486200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:92485800-92492000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr10:92485800-92494000	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr10:92486000-92493000	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:92486200-92494200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr10:92486200-92494400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:92486400-92492000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr10:92488400-92489200	Enhancers	Fetal Thymus	thymus
50	chr10:92492000-92493200	Enhancers	GM12878-XiMat	blood

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