Variant report

Variant	nsv1036237
Chromosome Location	chr14:46661352-46707942
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FANCM-6	chr14:46680950-46681007	NONHSAT036679
2	lnc-FANCM-6	chr14:46680950-46681007	ENSG00000258700
3	lnc-FANCM-6	chr14:46680027-46680142	ENSG00000258700
4	lnc-FANCM-6	chr14:46680950-46681007	ENSG00000258700
5	lnc-FANCM-6	chr14:46680950-46681007	NONHSAT036678
6	lnc-FANCM-6	chr14:46680027-46680142	ENSG00000258700
7	lnc-FANCM-6	chr14:46680027-46680142	NONHSAT036679
8	lnc-FANCM-6	chr14:46680027-46680142	NONHSAT036678

No data

Extended variants
information (count: 173 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:173 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577351680	chr14:46665419-46665420	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs143548145	chr14:46665478-46665479	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs12891381	chr14:46665480-46665481	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs189366006	chr14:46665482-46665483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs529880072	chr14:46665496-46665497	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs542015238	chr14:46665501-46665502	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs559944119	chr14:46665507-46665508	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs12890423	chr14:46665508-46665509	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs527374984	chr14:46665514-46665515	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs148014483	chr14:46665641-46665642	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs570409671	chr14:46665666-46665667	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs140133519	chr14:46665694-46665695	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs35219891	chr14:46665695-46665696	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs531231606	chr14:46665724-46665725	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs550837087	chr14:46665747-46665748	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs192305386	chr14:46665769-46665770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs858869	chr14:46666415-46666416	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs72684686	chr14:46666423-46666424	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs377335677	chr14:46666453-46666454	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs529034900	chr14:46666464-46666465	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs542779413	chr14:46666496-46666497	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs574924615	chr14:46666527-46666528	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs186264831	chr14:46666554-46666555	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs562969084	chr14:46666579-46666580	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs73238463	chr14:46666605-46666606	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs560679491	chr14:46666613-46666614	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs572176151	chr14:46666623-46666624	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs545698143	chr14:46666636-46666637	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs563799237	chr14:46666657-46666658	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs189641068	chr14:46666669-46666670	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs73238465	chr14:46666720-46666721	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs72684687	chr14:46666782-46666783	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs858870	chr14:46666812-46666813	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
34	rs180821542	chr14:46666848-46666849	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs185146050	chr14:46666850-46666851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs143326010	chr14:46666851-46666852	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs72684688	chr14:46666864-46666865	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs59536259	chr14:46666897-46666898	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs538332373	chr14:46666901-46666902	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs550330052	chr14:46666933-46666934	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs568417172	chr14:46667006-46667007	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs150915797	chr14:46667021-46667022	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs191123952	chr14:46667037-46667038	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs376591933	chr14:46667068-46667069	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs139410238	chr14:46667072-46667073	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs150043860	chr14:46667108-46667109	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs144330739	chr14:46667163-46667164	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs183267546	chr14:46667260-46667261	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs543099192	chr14:46667357-46667358	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs186229577	chr14:46667359-46667360	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Retinoblastoma	21504564	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Non-small cell lung cancer	21044232	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Melanoma	18172304	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Medulloblastoma	21979893	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Hepatocellular carcinoma	22174799	CNVD
Colorectal cancer	16774939	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Breast cancer	17899364	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Renal cell carcinoma	21668985	CNVD
Chronic myeloid leukemia	20724749	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Wilms tumour	21544195	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21785460	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	21858162	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21183584	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Renal cell carcinoma	18194544	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	21364760	CNVD
Cancer	19907438	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:46665400-46665800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:46666400-46667200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:46666400-46667600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:46666400-46667800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr14:46666800-46667400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr14:46667000-46667400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:46674000-46674800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:46674400-46674800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:46703000-46704200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:46703200-46704200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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