Variant report

Variant	nsv1036239
Chromosome Location	chr12:33528828-34008814
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1917)
CpG islands
(count:1161)
Chromatin interactive
region (count:214)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1917 , 50 per page) page: 1 2 3 4 5 6 7 ... 39

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr12:33831095-33831857	K562	blood:	n/a	n/a
2	ARID3A	chr12:33905885-33906235	K562	blood:	n/a	n/a
3	ARID3A	chr12:33740984-33742025	K562	blood:	n/a	n/a
4	ARID3A	chr12:33806348-33806595	K562	blood:	n/a	n/a
5	ARID3A	chr12:33807257-33807627	K562	blood:	n/a	n/a
6	ATF1	chr12:33590564-33590891	K562	blood:	n/a	n/a
7	ATF1	chr12:33580111-33580282	K562	blood:	n/a	n/a
8	ATF1	chr12:33582476-33582638	K562	blood:	n/a	n/a
9	ATF1	chr12:33740996-33741606	K562	blood:	n/a	n/a
10	ATF1	chr12:33749134-33749614	K562	blood:	n/a	n/a
11	ATF1	chr12:33837952-33838076	K562	blood:	n/a	n/a
12	ATF1	chr12:33807257-33807582	K562	blood:	n/a	n/a
13	ATF1	chr12:33905799-33906217	K562	blood:	n/a	n/a
14	ATF1	chr12:33918231-33918238	K562	blood:	n/a	n/a
15	ATF2	chr12:33741735-33742256	GM12878	blood:	n/a	n/a
16	ATF2	chr12:33740922-33741468	H1-hESC	embryonic stem cell:	n/a	n/a
17	ATF2	chr12:33740950-33741433	H1-hESC	embryonic stem cell:	n/a	n/a
18	ATF3	chr12:33806344-33806588	K562	blood:	n/a	n/a
19	ATF3	chr12:33740980-33741602	K562	blood:	n/a	n/a
20	BACH1	chr12:33536437-33536460	K562	blood:	n/a	n/a
21	BACH1	chr12:33807354-33807505	K562	blood:	n/a	n/a
22	BACH1	chr12:33854735-33854758	H1-hESC	embryonic stem cell:	n/a	n/a
23	BACH1	chr12:33592008-33593130	H1-hESC	embryonic stem cell:	n/a	n/a
24	BACH1	chr12:33613710-33613715	K562	blood:	n/a	n/a
25	BACH1	chr12:33625286-33625549	H1-hESC	embryonic stem cell:	n/a	n/a
26	BACH1	chr12:33847319-33847363	K562	blood:	n/a	n/a
27	BACH1	chr12:33812366-33812495	K562	blood:	n/a	n/a
28	BACH1	chr12:33583365-33583487	K562	blood:	n/a	n/a
29	BACH1	chr12:33740516-33741383	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr12:33591361-33591590	H1-hESC	embryonic stem cell:	n/a	n/a
31	BACH1	chr12:33905912-33906117	H1-hESC	embryonic stem cell:	n/a	n/a
32	BACH1	chr12:33751125-33751167	K562	blood:	n/a	n/a
33	BATF	chr12:33741913-33742237	GM12878	blood:	n/a	n/a
34	BCL11A	chr12:33741023-33741182	H1-hESC	embryonic stem cell:	n/a	n/a
35	BCL11A	chr12:33802958-33803315	H1-hESC	embryonic stem cell:	n/a	chr12:33803028-33803037
36	BHLHE40	chr12:33591276-33591724	K562	blood:	n/a	n/a
37	BHLHE40	chr12:33867451-33867477	K562	blood:	n/a	n/a
38	BHLHE40	chr12:33741303-33741660	GM12878	blood:	n/a	n/a
39	BHLHE40	chr12:33697751-33697753	K562	blood:	n/a	n/a
40	BHLHE40	chr12:33905773-33906139	K562	blood:	n/a	n/a
41	BHLHE40	chr12:33734583-33735390	GM12878	blood:	n/a	n/a
42	BHLHE40	chr12:33759702-33760074	GM12878	blood:	n/a	n/a
43	BHLHE40	chr12:33759769-33760039	K562	blood:	n/a	n/a
44	BHLHE40	chr12:33806387-33806560	K562	blood:	n/a	n/a
45	BHLHE40	chr12:33592354-33592978	K562	blood:	n/a	n/a
46	BHLHE40	chr12:33741030-33741823	K562	blood:	n/a	n/a
47	BRCA1	chr12:33713910-33713913	H1-hESC	embryonic stem cell:	n/a	n/a
48	BRCA1	chr12:33740352-33740651	Hela-S3	cervix:	n/a	n/a
49	CBX3	chr12:33592581-33592968	K562	blood:	n/a	n/a
50	CBX3	chr12:33673832-33674319	K562	blood:	n/a	n/a

(count:1161 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr12:34001319-34001369	A549	lung:	n/a
2	chr12:33592285-33592335	U87	brain:	n/a
3	chr12:34001319-34001369	A549	lung:	n/a
4	chr12:33592285-33592335	U87	brain:	n/a
5	chr12:33592642-33592692	RPTEC	kidney:	n/a
6	chr12:33787337-33787387	HEEpiC	esophagus:	n/a
7	chr12:33750494-33750544	U87	brain:	n/a
8	chr12:33593177-33593227	SK-N-SH	brain:	n/a
9	chr12:33589385-33589435	SK-N-SH_RA	brain:	n/a
10	chr12:33592285-33592335	Caco-2	colon:	n/a
11	chr12:33593049-33593099	U87	brain:	n/a
12	chr12:33593913-33593963	PFSK-1	brain:	n/a
13	chr12:33592285-33592335	HRCEpiC	kidney:	n/a
14	chr12:33595118-33595168	IMR90	lung:	fetal
15	chr12:33591505-33591555	NH-A	brain:	n/a
16	chr12:33589594-33589644	AG10803	skin:	n/a
17	chr12:33750494-33750544	Hela-S3	cervix:	n/a
18	chr12:33750494-33750544	SK-N-SH	brain:	n/a
19	chr12:33589385-33589435	HPAEpiC	pulmonary alveolar:	n/a
20	chr12:33589594-33589644	K562	blood:	n/a
21	chr12:33592500-33592550	SAEC	small airway:	n/a
22	chr12:33591336-33591386	AG04449	skin:	fetal
23	chr12:33787337-33787387	HRPEpiC	eye:	n/a
24	chr12:33787337-33787387	NT2-D1	testis:	n/a
25	chr12:33750494-33750544	SK-N-SH_RA	brain:	n/a
26	chr12:33589594-33589644	HAEpiC	amniotic membrane:	n/a
27	chr12:33593913-33593963	PANC-1	pancreas:	n/a
28	chr12:33589594-33589644	GM12878	blood:	n/a
29	chr12:33528782-33528832	AG04449	skin:	fetal
30	chr12:33592642-33592692	LNCaP	prostate:	n/a
31	chr12:33589385-33589435	Hela-S3	cervix:	n/a
32	chr12:33750494-33750544	HUVEC	blood vessel:	n/a
33	chr12:33589594-33589644	ProgFib	skin:	n/a
34	chr12:33591505-33591555	AG10803	skin:	n/a
35	chr12:33592078-33592128	HPAEpiC	pulmonary alveolar:	n/a
36	chr12:33591336-33591386	HAEpiC	amniotic membrane:	n/a
37	chr12:33589385-33589435	HepG2	liver:	n/a
38	chr12:33592078-33592128	HIPEpiC	eye:	n/a
39	chr12:33593177-33593227	Jurkat	blood:	n/a
40	chr12:33592285-33592335	HCPEpiC	choroid plexus:	n/a
41	chr12:33528782-33528832	HUVEC	blood vessel:	n/a
42	chr12:33592642-33592692	NB4	blood:	n/a
43	chr12:33595118-33595168	SKMC	muscle:	n/a
44	chr12:33592285-33592335	HAEpiC	amniotic membrane:	n/a
45	chr12:33591899-33591949	AG04450	lung:	fetal
46	chr12:34001319-34001369	U87	brain:	n/a
47	chr12:33592285-33592335	IMR90	lung:	fetal
48	chr12:33591899-33591949	HCF	heart:	n/a
49	chr12:33592642-33592692	GM12878	blood:	n/a
50	chr12:33787337-33787387	SK-N-MC	brain:	n/a

(count:214 , 50 per page) page: 1 2 3 4 5

No.	Distal block	Cell Line	Cell type
1	chr12:33578497..33581181-chr12:33582764..33584614,2	K562	blood:
2	chr12:33592809..33594554-chr12:33758267..33760517,2	MCF-7	breast:
3	chr12:33830515..33832081-chr12:33832328..33834300,2	K562	blood:
4	chr12:33830515..33832081-chr12:33832328..33834300,2	K562	blood:
5	chr12:33587036..33589098-chr12:33993044..33994546,2	MCF-7	breast:
6	chr12:33581348..33583914-chr12:33584659..33586358,3	MCF-7	breast:
7	chr12:33785580..33788231-chr12:33795540..33797279,2	MCF-7	breast:
8	chr12:33752276..33753246-chr12:33762327..33763192,5	MCF-7	breast:
9	chr12:33615181..33617280-chr12:33622628..33625177,2	MCF-7	breast:
10	chr12:33573643..33576869-chr12:33577917..33580501,4	K562	blood:
11	chr12:33680785..33683680-chr12:33685838..33687484,3	MCF-7	breast:
12	chr12:33749299..33751532-chr12:33760036..33763741,3	MCF-7	breast:
13	chr12:33737682..33739227-chr12:33743519..33746177,2	K562	blood:
14	chr12:33555550..33557717-chr12:33560120..33561805,2	K562	blood:
15	chr12:33538532..33540050-chr12:33561297..33564273,2	MCF-7	breast:
16	chr12:33593109..33594784-chr12:33753664..33755603,2	MCF-7	breast:
17	chr12:33704309..33707491-chr12:33710515..33713446,4	K562	blood:
18	chr12:33582705..33584694-chr12:33588953..33591212,2	K562	blood:
19	chr12:33735767..33737470-chr12:33737741..33739409,2	K562	blood:
20	chr12:33636131..33639117-chr12:33639347..33641138,2	MCF-7	breast:
21	chr12:33749943..33752525-chr12:33753325..33754973,2	MCF-7	breast:
22	chr12:33041897..33044565-chr12:33740312..33741870,2	K562	blood:
23	chr12:33652466..33655399-chr12:33657814..33659678,2	K562	blood:
24	chr12:33738598..33741307-chr8:42697129..42698949,2	MCF-7	breast:
25	chr12:33538532..33540050-chr12:33561297..33564273,2	MCF-7	breast:
26	chr12:33795537..33797751-chr12:33801352..33803205,2	MCF-7	breast:
27	chr12:33828843..33831342-chr12:33831748..33833892,2	MCF-7	breast:
28	chr12:33652466..33655399-chr12:33657814..33659678,2	K562	blood:
29	chr12:33762584..33764416-chr12:33765590..33768500,2	MCF-7	breast:
30	chr12:33740467..33741676-chr12:33762290..33763074,5	MCF-7	breast:
31	chr12:33901002..33902516-chr12:33905016..33907291,2	MCF-7	breast:
32	chr12:33748144..33750127-chr12:33751970..33754633,2	K562	blood:
33	chr12:33720010..33722634-chr12:33727963..33730491,2	K562	blood:
34	chr12:33807598..33810256-chr12:33811118..33813511,2	K562	blood:
35	chr12:33590801..33593904-chr12:33746085..33748903,3	MCF-7	breast:
36	chr12:33588056..33590356-chr12:33591232..33593129,2	K562	blood:
37	chr12:33757088..33759339-chr12:33761312..33763614,2	K562	blood:
38	chr12:33983313..33984854-chr12:33986265..33988102,2	MCF-7	breast:
39	chr12:33757088..33759339-chr12:33761312..33763614,2	K562	blood:
40	chr12:33588584..33590612-chr12:33792019..33793766,2	K562	blood:
41	chr12:33586288..33588588-chr12:33738098..33741571,3	MCF-7	breast:
42	chr12:33903835..33905859-chr12:33907919..33910698,2	MCF-7	breast:
43	chr12:33593109..33594784-chr12:33753664..33755603,2	MCF-7	breast:
44	chr12:33673352..33675554-chr12:33738881..33741351,2	MCF-7	breast:
45	chr12:32908104..32910738-chr12:33762406..33764699,2	MCF-7	breast:
46	chr12:33753748..33755380-chr12:33758835..33761146,2	K562	blood:
47	chr12:32908013..32910248-chr12:33589503..33591482,2	K562	blood:
48	chr12:33977547..33980480-chr12:33992605..33994282,2	K562	blood:
49	chr12:33585788..33587542-chr12:33741964..33743676,2	MCF-7	breast:
50	chr12:33591224..33595287-chr12:33601141..33606110,5	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PKP2-2	chr12:33579073-33579095	NONHSAT027643
2	lnc-ALG10-6	chr12:33870788-33871152	NONHSAT027645
3	lnc-PKP2-2	chr12:33560733-33561253	NONHSAT027643
4	lnc-PKP2-1	chr12:33557810-33558831	ENSG00000259937.1

No data

Variant related genes	Relation type
ENSG00000270807	TF binding region
ENSG00000265029	TF binding region
ENSG00000256070	TF binding region
ENSG00000259937	TF binding region
SYT10	TF binding region
RNU6-400P	TF binding region
ENSG00000270807	CpG island
ENSG00000265029	CpG island
ENSG00000256070	CpG island
ENSG00000259937	CpG island
SYT10	CpG island
RNU6-400P	CpG island
ENSG00000171148	chromatin interactions
ENSG00000168298	chromatin interactions
ENSG00000110975	chromatin interactions
ENSG00000241553	chromatin interactions
ENSG00000120925	chromatin interactions
ENSG00000006327	chromatin interactions
ENSG00000168172	chromatin interactions
ENSG00000212475	chromatin interactions
ENSG00000139131	chromatin interactions
ENSG00000131931	chromatin interactions
ENSG00000184697	chromatin interactions
ENSG00000250151	chromatin interactions
ENSG00000266044	chromatin interactions

Extended variants
information (count: 8554 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:8554 , 50 per page) page: 1 2 3 4 5 6 7 ... 172

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs553031135	chr12:33528839-33528840	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs573262665	chr12:33528857-33528858	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs556303158	chr12:33528873-33528874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs181080302	chr12:33528884-33528885	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs577932431	chr12:33528991-33528992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs73310152	chr12:33528999-33529000	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs543728666	chr12:33529059-33529060	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs7309592	chr12:33529062-33529063	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs371804181	chr12:33529099-33529100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs2389194	chr12:33529164-33529165	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs368247837	chr12:33529186-33529187	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs11052654	chr12:33529213-33529214	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs565653763	chr12:33529242-33529243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs542175997	chr12:33529276-33529277	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs528148897	chr12:33529285-33529286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs9888363	chr12:33529288-33529289	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs568637138	chr12:33529289-33529290	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs9888320	chr12:33529351-33529352	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
19	rs557217990	chr12:33529376-33529377	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs570543159	chr12:33529404-33529405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs142297650	chr12:33529431-33529432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs552906574	chr12:33529472-33529473	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs573257908	chr12:33529475-33529476	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs542304347	chr12:33529482-33529483	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs10844566	chr12:33529487-33529488	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs115907520	chr12:33529538-33529539	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs543766785	chr12:33529557-33529558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs113367840	chr12:33529567-33529568	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs563597483	chr12:33529607-33529608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs543545169	chr12:33529631-33529632	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs532413781	chr12:33529646-33529647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs10844567	chr12:33529647-33529648	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs559255988	chr12:33529655-33529656	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs186262069	chr12:33529664-33529665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs548259017	chr12:33529679-33529680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs562181532	chr12:33529693-33529694	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs530988846	chr12:33529719-33529720	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs550736858	chr12:33529722-33529723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs11052655	chr12:33529732-33529733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs190235698	chr12:33529744-33529745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs367651997	chr12:33529750-33529751	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs201820175	chr12:33529782-33529783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs200421519	chr12:33529788-33529789	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs139188967	chr12:33529814-33529815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs199704172	chr12:33529822-33529823	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs34361405	chr12:33529823-33529824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs368560005	chr12:33529827-33529828	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs566847178	chr12:33529828-33529829	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs199729827	chr12:33529864-33529865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs376226612	chr12:33529867-33529868	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Acute myeloid leukemia	16864856	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Testicular cancer	18059402	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Seminomas	18059402	CNVD
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Testicular germ cell tumor	18059402	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Ewing''s sarcoma	17952124	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Autism	22495311	CNVD
Cancer	20164919	CNVD
Neurodevelopmental disorder	22521361	CNVD
Breast cancer	21509527	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cancer	21129771	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Chordoma	18071362	CNVD
Lung cancer	18438408	CNVD
Cancer	21272361	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
small cell lung cancer	20016488	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Schizophrenia	20967226	CNVD
Tetralogy of Fallot	22912587	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Bipolar disorder	19114987	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:799 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33525600-33534600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:33534600-33535400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:33535400-33536600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr12:33536600-33536800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:33536800-33537200	Enhancers	Brain Cingulate Gyrus	brain
6	chr12:33536800-33537600	Enhancers	Brain Germinal Matrix	brain
7	chr12:33537800-33540000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr12:33542600-33543000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr12:33543000-33544400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr12:33544400-33545400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr12:33566400-33575400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:33570400-33575800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:33574000-33576200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:33575400-33577600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:33575800-33578200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr12:33576200-33577400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr12:33577400-33580400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr12:33577600-33578400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr12:33578200-33588400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr12:33578400-33579200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr12:33579200-33590600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr12:33586800-33589800	Weak transcription	K562	blood
23	chr12:33588200-33588400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr12:33588400-33590000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr12:33589800-33595600	Active TSS	K562	blood
26	chr12:33590000-33590600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:33590200-33591200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr12:33590400-33590600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
29	chr12:33590400-33590600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr12:33590600-33590800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
31	chr12:33590600-33591000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr12:33590600-33591200	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr12:33590600-33591200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
34	chr12:33590600-33592000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:33590600-33593200	Active TSS	Brain Anterior Caudate	brain
36	chr12:33590600-33593400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr12:33590800-33591000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
38	chr12:33590800-33591000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
39	chr12:33590800-33591000	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
40	chr12:33590800-33591000	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
41	chr12:33590800-33591200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
42	chr12:33590800-33591400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
43	chr12:33590800-33591600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
44	chr12:33590800-33592000	Bivalent/Poised TSS	Right Atrium	heart
45	chr12:33591000-33591200	Bivalent Enhancer	Brain Angular Gyrus	brain
46	chr12:33591000-33591200	Bivalent Enhancer	Fetal Brain Male	brain
47	chr12:33591000-33591200	Bivalent Enhancer	Fetal Brain Female	brain
48	chr12:33591000-33591200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
49	chr12:33591000-33591200	Bivalent/Poised TSS	Fetal Stomach	stomach
50	chr12:33591000-33591400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links