Variant report

Variant	nsv1036294
Chromosome Location	chr11:24204120-24225360
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:24202163..24204133-chr11:24208051..24210770,2	MCF-7	breast:
2	chr11:24221833..24223887-chr11:24233684..24236438,2	K562	blood:
3	chr11:24202163..24204133-chr11:24208051..24210770,2	MCF-7	breast:

Extended variants
information (count: 470 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:470 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs555868440	chr11:24206208-24206209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs533942173	chr11:24206238-24206239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs149123702	chr11:24206246-24206247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs558902115	chr11:24206268-24206269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs534839087	chr11:24206301-24206302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs112968670	chr11:24206321-24206322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs181498202	chr11:24206335-24206336	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs146676699	chr11:24206364-24206365	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs9665756	chr11:24206373-24206374	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs185245641	chr11:24206393-24206394	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs9665758	chr11:24206400-24206401	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs559050371	chr11:24206420-24206421	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs528195512	chr11:24206470-24206471	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs541556792	chr11:24206495-24206496	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs541191530	chr11:24206539-24206540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs147995564	chr11:24206554-24206555	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs533411767	chr11:24206564-24206565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs28864378	chr11:24206582-24206583	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs569939174	chr11:24206590-24206591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs529320393	chr11:24206602-24206603	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs34367326	chr11:24206619-24206620	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs397847925	chr11:24206626-24206627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200332270	chr11:24206627-24206628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs188436825	chr11:24206628-24206629	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs375386460	chr11:24206642-24206643	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs28887816	chr11:24206662-24206663	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs546342689	chr11:24206721-24206722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs28833840	chr11:24206736-24206737	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs535443299	chr11:24206784-24206785	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201987786	chr11:24206792-24206793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs138492898	chr11:24206797-24206798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs77420250	chr11:24206831-24206832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs536939095	chr11:24206836-24206837	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs557258237	chr11:24206850-24206851	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs375436216	chr11:24206860-24206861	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs573535515	chr11:24206865-24206866	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs542581186	chr11:24206891-24206892	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs116094859	chr11:24206903-24206904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs114782747	chr11:24206911-24206912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs572562333	chr11:24206926-24206927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs541232141	chr11:24206945-24206946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs568106477	chr11:24206946-24206947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs114050684	chr11:24206948-24206949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs564336050	chr11:24206952-24206953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs533613586	chr11:24206966-24206967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs181778721	chr11:24206972-24206973	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs529436703	chr11:24206973-24206974	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs534378185	chr11:24206974-24206975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs368418245	chr11:24206999-24207000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs150255873	chr11:24207007-24207008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24206200-24211800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:24211800-24213200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:24212400-24213600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr11:24216400-24216600	ZNF genes & repeats	Right Atrium	heart
5	chr11:24219800-24220400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr11:24220000-24220600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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