Variant report

Variant	nsv1036747
Chromosome Location	chr11:26758984-26781674
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:26775142..26776062-chr11:27146200..27147224,6	MCF-7	breast:
2	chr11:26775495..26777842-chr11:27505210..27508192,2	MCF-7	breast:
3	chr11:26762440..26762941-chr21:47648989..47649653,2	K562	blood:
4	chr11:26775186..26776114-chr11:27507133..27508432,3	MCF-7	breast:
5	chr11:26774919..26776345-chr11:27179975..27180962,4	MCF-7	breast:
6	chr11:26775214..26776083-chr11:27180054..27180898,5	MCF-7	breast:
7	chr11:26775079..26775832-chr11:27507420..27508151,2	K562	blood:
8	chr11:26762421..26763421-chr21:47648846..47649567,2	MCF-7	breast:
9	chr11:26762421..26762941-chr21:47648701..47649275,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000242527	chromatin interactions
ENSG00000215424	chromatin interactions
ENSG00000160285	chromatin interactions

Extended variants
information (count: 682 )
Associated
traits (count: 53 )

Variant overlapped rSNPs/rCNVs (count:682 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192867256	chr11:26758985-26758986	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs184986951	chr11:26758986-26758987	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs575846820	chr11:26759001-26759002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs539653297	chr11:26759028-26759029	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs143384964	chr11:26759053-26759054	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs112468186	chr11:26759054-26759055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs140535419	chr11:26759068-26759069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs189662903	chr11:26759121-26759122	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs111887184	chr11:26759127-26759128	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs574417617	chr11:26759167-26759168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs541845957	chr11:26759195-26759196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs374941282	chr11:26759224-26759225	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs563581131	chr11:26759292-26759293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs575571453	chr11:26759294-26759295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs546040362	chr11:26759340-26759341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs192848550	chr11:26759358-26759359	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs528256212	chr11:26759366-26759367	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs183657068	chr11:26759375-26759376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs562038657	chr11:26759404-26759405	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs78623382	chr11:26759436-26759437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs114722721	chr11:26759517-26759518	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs34685217	chr11:26759558-26759559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs187973713	chr11:26759577-26759578	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs182039449	chr11:26759621-26759622	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs551766929	chr11:26759626-26759627	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs527748821	chr11:26759632-26759633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs567088521	chr11:26759639-26759640	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs150457422	chr11:26759683-26759684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs75569329	chr11:26759694-26759695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs568117654	chr11:26759709-26759710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs535454447	chr11:26759720-26759721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201037129	chr11:26759725-26759726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs200786269	chr11:26759726-26759727	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs397778185	chr11:26759727-26759728	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544975821	chr11:26759728-26759729	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs200952913	chr11:26759729-26759730	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs369086917	chr11:26759730-26759731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs570911224	chr11:26759777-26759778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs575289162	chr11:26759786-26759787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs372866897	chr11:26759813-26759814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs546110422	chr11:26759815-26759816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs73438463	chr11:26759827-26759828	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs375086617	chr11:26759863-26759864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs72884871	chr11:26759870-26759871	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs4494266	chr11:26759875-26759876	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs190376872	chr11:26759876-26759877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs562219237	chr11:26759886-26759887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138187377	chr11:26759955-26759956	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs529311733	chr11:26759968-26759969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs142842272	chr11:26759999-26760000	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:53)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Neuroticism	17667963	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Ependymoma	20639864	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26756800-26762600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr11:26762200-26763000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:26762400-26763000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:26762400-26763200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:26762400-26763400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:26762600-26763000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:26762600-26763200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:26762600-26763200	Enhancers	Osteobl	bone
9	chr11:26762600-26763400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:26762600-26763400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:26762600-26763600	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr11:26763000-26767600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:26763200-26763600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:26763200-26764400	Weak transcription	Osteobl	bone
15	chr11:26763400-26764400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:26763400-26764600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:26764400-26764600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:26764400-26764800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:26764600-26764800	Enhancers	Muscle Satellite Cultured Cells	--
20	chr11:26764600-26764800	Enhancers	Osteobl	bone
21	chr11:26767600-26768200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:26772200-26772400	Enhancers	Aorta	Aorta
23	chr11:26772400-26779000	Weak transcription	Aorta	Aorta
24	chr11:26773800-26775200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:26774000-26775000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:26774000-26775600	Enhancers	Fetal Intestine Large	intestine
27	chr11:26774200-26775600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr11:26774400-26776000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr11:26774800-26775600	Enhancers	Brain Anterior Caudate	brain
30	chr11:26774800-26776000	Enhancers	Fetal Intestine Small	intestine
31	chr11:26774800-26776000	Enhancers	Fetal Stomach	stomach
32	chr11:26775000-26775400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr11:26775000-26775600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr11:26775000-26775600	Enhancers	Brain Substantia Nigra	brain
35	chr11:26775200-26775600	Enhancers	Liver	Liver
36	chr11:26775200-26775600	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr11:26775200-26775600	Enhancers	Fetal Heart	heart
38	chr11:26775200-26775600	Enhancers	NHDF-Ad	bronchial
39	chr11:26775200-26775800	Enhancers	Colon Smooth Muscle	Colon
40	chr11:26775200-26776000	Enhancers	Fetal Kidney	kidney
41	chr11:26775200-26776000	Enhancers	Fetal Muscle Leg	muscle
42	chr11:26775200-26776000	Enhancers	Stomach Smooth Muscle	stomach
43	chr11:26775400-26775600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:26775400-26775800	Enhancers	Brain Hippocampus Middle	brain
45	chr11:26775400-26776000	Enhancers	Rectal Smooth Muscle	rectum
46	chr11:26775400-26777600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:26775600-26779600	Weak transcription	Fetal Heart	heart
48	chr11:26776000-26779000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr11:26776000-26779600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:26777400-26777600	Enhancers	Brain Inferior Temporal Lobe	brain

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