Variant report

Variant	nsv1037228
Chromosome Location	chr10:56377898-56405762
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTRNR2L5-4	chr10:56378894-56379084	NONHSAT013457
2	lnc-MTRNR2L5-4	chr10:56378894-56379084	ENSG00000234173.1

Extended variants
information (count: 224 )
Associated
traits (count: 70 )

Variant overlapped rSNPs/rCNVs (count:224 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2384516	chr10:56377898-56377899	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs536934178	chr10:56377934-56377935	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs7098661	chr10:56377945-56377946	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs7099733	chr10:56377973-56377974	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs539192113	chr10:56377996-56377997	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs150540841	chr10:56378007-56378008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs117401733	chr10:56378014-56378015	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs370525423	chr10:56378018-56378019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs543815849	chr10:56378042-56378043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs139502505	chr10:56378145-56378146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs7099039	chr10:56378165-56378166	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs191524450	chr10:56378182-56378183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs201735823	chr10:56378241-56378242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560330642	chr10:56378242-56378243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs532222320	chr10:56378260-56378261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs552319933	chr10:56378311-56378312	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs367858635	chr10:56378381-56378382	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs564969166	chr10:56378442-56378443	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs530984966	chr10:56378456-56378457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs7099464	chr10:56378458-56378459	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs377103211	chr10:56378524-56378525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs532145528	chr10:56378532-56378533	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs149614659	chr10:56378557-56378558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs373036753	chr10:56378620-56378621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs536641084	chr10:56378676-56378677	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs562316194	chr10:56378746-56378747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs530449076	chr10:56378816-56378817	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs144315334	chr10:56378831-56378832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs567128968	chr10:56378863-56378864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201958521	chr10:56378864-56378865	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs529844575	chr10:56378873-56378874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs78567409	chr10:56378888-56378889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs79945966	chr10:56378908-56378909	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
34	rs558687796	chr10:56378910-56378911	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
35	rs398075173	chr10:56378914-56378915	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
36	rs201190525	chr10:56378916-56378917	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
37	rs568653162	chr10:56378933-56378934	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
38	rs184058614	chr10:56379016-56379017	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
39	rs537546344	chr10:56379069-56379070	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
40	rs201728695	chr10:56379077-56379078	Weak transcription	lncRNA	n/a	Overlapped CNVs	n/a
41	rs554171988	chr10:56379085-56379086	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs566472036	chr10:56379089-56379090	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs75613671	chr10:56379103-56379104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs566257695	chr10:56379136-56379137	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs147704519	chr10:56379137-56379138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs540191438	chr10:56379144-56379145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs187281995	chr10:56379193-56379194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs141060178	chr10:56379195-56379196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs144920646	chr10:56379213-56379214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs207470944	chr10:56379251-56379252	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:70)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Obesity	21956041	CNVD
Developmental delay	21948486	CNVD
Intellectual disability	21948486	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Colorectal cancer	16272173	CNVD
Metanephric adenoma	20802469	CNVD
Autism	20841430	CNVD
Mental retardation	17124404	CNVD
Epilepsy	20923578	CNVD
Prostate cancer	16573809	CNVD
Schizophrenia	19329560	CNVD
Heart failure	18772530	CNVD
Heart failure	18854381	CNVD
Hyperglycemia	19060297	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Myelofibrosis	22110671	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Glioblastoma multiforme	22286061	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Usher syndrome	20538994	CNVD
Glioblastoma multiforme	17002787	CNVD
Colorectal cancer	16774939	CNVD
Autism	20858243	CNVD
Breast cancer	22522925	CNVD
Usher type I cohort	17277737	CNVD
Usher type I cohort	21436283	CNVD
Leukemia	21357790	CNVD
Medulloblastoma	22832581	CNVD
Melanoma	17363583	CNVD
Cancer	20164919	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56373800-56381200	Weak transcription	HUVEC	blood vessel
2	chr10:56374000-56381200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:56381200-56381400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:56381200-56381400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:56381200-56382200	Flanking Active TSS	HUVEC	blood vessel
6	chr10:56381400-56381800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:56381400-56381800	Active TSS	Primary hematopoietic stem cells	blood
8	chr10:56381400-56381800	Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr10:56381400-56381800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:56381400-56382000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:56381600-56382200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:56381800-56382000	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr10:56381800-56382000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr10:56381800-56382200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:56382000-56382200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:56382200-56383000	Enhancers	HUVEC	blood vessel

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