Variant report

Variant	nsv1037609
Chromosome Location	chr10:92374615-92424992
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92387383..92387883-chrX:34116231..34116845,2	MCF-7	breast:
2	chr10:92046589..92049031-chr10:92410934..92413664,2	MCF-7	breast:
3	chr10:91908033..91909093-chr10:92411955..92412824,3	MCF-7	breast:
4	chr10:92047856..92048792-chr10:92412267..92413265,3	MCF-7	breast:
5	chr10:91553209..91554089-chr10:92418302..92419167,2	MCF-7	breast:

Extended variants
information (count: 1386 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:1386 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1573252	chr10:92374615-92374616	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs148166318	chr10:92374683-92374684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs546005937	chr10:92374688-92374689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs200501784	chr10:92374692-92374693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs144037179	chr10:92374694-92374695	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs147288644	chr10:92374700-92374701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569581935	chr10:92374701-92374702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs74698447	chr10:92374716-92374717	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs551904385	chr10:92374732-92374733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs565744797	chr10:92374740-92374741	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs371639646	chr10:92374747-92374748	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs531511629	chr10:92374768-92374769	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs550515875	chr10:92374785-92374786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs141592204	chr10:92374801-92374802	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs5786914	chr10:92374804-92374805	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs571278794	chr10:92374820-92374821	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs1547851	chr10:92374826-92374827	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs546765389	chr10:92374834-92374835	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs574753465	chr10:92374847-92374848	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs113015864	chr10:92374852-92374853	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs537476480	chr10:92374902-92374903	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs557405944	chr10:92374906-92374907	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs374097062	chr10:92374912-92374913	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs1972397	chr10:92374955-92374956	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs376472050	chr10:92374979-92374980	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs111811911	chr10:92374993-92374994	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs559889827	chr10:92375015-92375016	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs1547852	chr10:92375046-92375047	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs541099088	chr10:92375055-92375056	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs560856255	chr10:92375127-92375128	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs183730465	chr10:92375150-92375151	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs138744764	chr10:92375163-92375164	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs562949921	chr10:92375186-92375187	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs377089119	chr10:92375213-92375214	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs189580980	chr10:92375215-92375216	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs142733028	chr10:92375232-92375233	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs538538838	chr10:92375237-92375238	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs374397704	chr10:92375250-92375251	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs555345274	chr10:92375251-92375252	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs72807168	chr10:92375272-92375273	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs374542205	chr10:92375302-92375303	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs376089973	chr10:92375343-92375344	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs528303272	chr10:92375387-92375388	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs537210120	chr10:92375394-92375395	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs548647809	chr10:92375407-92375408	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs115467908	chr10:92375427-92375428	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs533817676	chr10:92375444-92375445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs558475320	chr10:92375481-92375482	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs34639357	chr10:92375493-92375494	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs370511692	chr10:92375552-92375553	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92372400-92375400	Weak transcription	Aorta	Aorta
2	chr10:92374800-92376000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:92375400-92375600	Enhancers	Aorta	Aorta
4	chr10:92382800-92383200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:92388400-92388600	Bivalent Enhancer	HSMMtube	muscle
6	chr10:92392600-92394200	Enhancers	Fetal Brain Male	brain
7	chr10:92393600-92393800	Enhancers	Stomach Smooth Muscle	stomach
8	chr10:92393800-92394600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:92394600-92395000	Enhancers	Stomach Smooth Muscle	stomach
10	chr10:92394600-92396200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:92394600-92396400	Enhancers	HSMMtube	muscle
12	chr10:92394600-92398200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:92394800-92395200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:92394800-92395400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr10:92394800-92395400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr10:92394800-92395400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr10:92394800-92395400	Enhancers	HSMM	muscle
18	chr10:92394800-92395600	Enhancers	Fetal Stomach	stomach
19	chr10:92394800-92396600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:92394800-92400000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:92395000-92395600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr10:92395000-92395600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:92395000-92401600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:92395400-92397200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:92395400-92400600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr10:92395600-92399000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr10:92395800-92396000	Enhancers	Aorta	Aorta
28	chr10:92396000-92402200	Weak transcription	Aorta	Aorta
29	chr10:92396200-92397200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:92396400-92401400	Weak transcription	HSMMtube	muscle
31	chr10:92397200-92397400	Enhancers	H1 Cell Line	embryonic stem cell
32	chr10:92397200-92398000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr10:92397200-92398000	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr10:92398000-92399200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:92398200-92398600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:92398600-92400400	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr10:92399000-92399200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr10:92399200-92399400	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr10:92399200-92399600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr10:92399600-92400200	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr10:92400000-92401400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr10:92400200-92404000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:92400400-92400800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr10:92400400-92405000	Enhancers	Fetal Heart	heart
45	chr10:92400600-92401600	Enhancers	Fetal Lung	lung
46	chr10:92400600-92402400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr10:92400800-92402600	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr10:92401200-92401800	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr10:92401200-92402000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:92401200-92402400	Enhancers	Duodenum Smooth Muscle	Duodenum

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