Variant report

Variant	nsv1038338
Chromosome Location	chr9:104938113-104965863
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GRIN3A-3	chr9:104946414-104946469	NONHSAT133756
2	lnc-GRIN3A-3	chr9:104942626-104945366	NONHSAT133756
3	lnc-GRIN3A-3	chr9:104946414-104946469	ucscGeneNc_uc004bbt_2
4	lnc-GRIN3A-3	chr9:104942631-104945366	ucscGeneNc_uc004bbt_2

Extended variants
information (count: 361 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:361 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs570122028	chr9:104940405-104940406	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs539235760	chr9:104940454-104940455	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs559166247	chr9:104940464-104940465	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs566391299	chr9:104940477-104940478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs561891717	chr9:104940482-104940483	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs183769651	chr9:104940490-104940491	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs116034550	chr9:104940497-104940498	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs574342654	chr9:104940540-104940541	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs543365829	chr9:104940560-104940561	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs145976399	chr9:104940568-104940569	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs535106289	chr9:104940585-104940586	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs576501971	chr9:104940602-104940603	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs529239891	chr9:104940604-104940605	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs547395307	chr9:104940615-104940616	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs559109028	chr9:104940632-104940633	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs528400005	chr9:104940643-104940644	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs566709409	chr9:104940651-104940652	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs73500620	chr9:104940681-104940682	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs139894434	chr9:104940711-104940712	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs187905693	chr9:104940733-104940734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs143387922	chr9:104940745-104940746	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs114501493	chr9:104940758-104940759	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs552311685	chr9:104940781-104940782	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs570182461	chr9:104940795-104940796	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs6479089	chr9:104940801-104940802	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs552838120	chr9:104940805-104940806	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs10820084	chr9:104940829-104940830	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs535373239	chr9:104940833-104940834	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs554973739	chr9:104940837-104940838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs10989886	chr9:104940961-104940962	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs536670474	chr9:104940994-104940995	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs369028660	chr9:104941022-104941023	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs113024407	chr9:104941046-104941047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs556505357	chr9:104941073-104941074	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs35731497	chr9:104941083-104941084	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs576567391	chr9:104941097-104941098	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs545473187	chr9:104941122-104941123	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs192940353	chr9:104941207-104941208	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs572693171	chr9:104941241-104941242	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs320201	chr9:104941304-104941305	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs561836257	chr9:104941314-104941315	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs183520771	chr9:104941315-104941316	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs559981235	chr9:104941356-104941357	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs543468300	chr9:104941371-104941372	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs150796346	chr9:104941379-104941380	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs532680626	chr9:104941447-104941448	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs552699288	chr9:104941466-104941467	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs376890618	chr9:104941537-104941538	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs559845970	chr9:104941570-104941571	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs369023218	chr9:104941571-104941572	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Leukemia	18688285	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute myeloid leukemia	21251322	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Breast cancer	17133270	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Fukuyama congenital muscular dystrophy	21572526	CNVD
Testicular germ cell tumor	18059402	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Mantle cell lymphoma	19029149	CNVD
Intracranial aneurysm	16715129	CNVD
Neuroblastoma	20406844	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104940400-104941800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr9:104940600-104941400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:104947400-104950200	Enhancers	Fetal Heart	heart
4	chr9:104947800-104948000	Enhancers	Ovary	ovary
5	chr9:104947800-104948400	Enhancers	Stomach Smooth Muscle	stomach
6	chr9:104947800-104948800	Enhancers	Adipose Nuclei	Adipose
7	chr9:104948000-104948800	Enhancers	Fetal Kidney	kidney
8	chr9:104948200-104948800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:104948600-104949200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr9:104948800-104949800	Weak transcription	Fetal Kidney	kidney
11	chr9:104949200-104949600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:104949600-104950400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr9:104950000-104950200	Enhancers	Fetal Kidney	kidney
14	chr9:104950000-104950800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr9:104950000-104950800	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links