Variant report

Variant	nsv1039061
Chromosome Location	chr10:19301914-19334758
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1089 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:1089 , 50 per page) page: 1 2 3 4 5 6 7 ... 22

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs546313877	chr10:19302615-19302616	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs151117419	chr10:19302671-19302672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs11008082	chr10:19302728-19302729	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs192804757	chr10:19302735-19302736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs75476572	chr10:19302737-19302738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs569086136	chr10:19302744-19302745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs537105346	chr10:19302772-19302773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs116344832	chr10:19302789-19302790	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs573914471	chr10:19302809-19302810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs534999797	chr10:19302826-19302827	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs552974201	chr10:19302831-19302832	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs577910509	chr10:19302860-19302861	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs139427636	chr10:19302871-19302872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs563716817	chr10:19302872-19302873	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs184916492	chr10:19302885-19302886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs9663964	chr10:19302939-19302940	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs566665645	chr10:19302952-19302953	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs189524992	chr10:19302954-19302955	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs112536571	chr10:19302974-19302975	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs12770262	chr10:19302983-19302984	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs561024617	chr10:19302999-19303000	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs142824885	chr10:19303012-19303013	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs78250446	chr10:19303037-19303038	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs145047864	chr10:19303061-19303062	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs147572034	chr10:19303062-19303063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs142042453	chr10:19303117-19303118	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs550898862	chr10:19303136-19303137	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs568932607	chr10:19303169-19303170	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs192813237	chr10:19303176-19303177	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs371123951	chr10:19303264-19303265	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs567724085	chr10:19303273-19303274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs534850678	chr10:19303287-19303288	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs7089736	chr10:19303304-19303305	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs571317349	chr10:19303348-19303349	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs183710868	chr10:19303382-19303383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs557252671	chr10:19303383-19303384	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs566588153	chr10:19303805-19303806	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs528524331	chr10:19303828-19303829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs143577240	chr10:19303840-19303841	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs371630907	chr10:19303849-19303850	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs571278138	chr10:19303850-19303851	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs186349085	chr10:19303893-19303894	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs573473799	chr10:19303905-19303906	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs577431538	chr10:19303929-19303930	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs375409906	chr10:19303985-19303986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs376815206	chr10:19304005-19304006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs569531606	chr10:19304026-19304027	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs148066079	chr10:19304035-19304036	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs10466063	chr10:19304052-19304053	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs551694347	chr10:19304073-19304074	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19302600-19303000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr10:19302800-19303400	Enhancers	NH-A	brain
3	chr10:19303800-19304000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:19303800-19304000	Enhancers	Placenta	Placenta
5	chr10:19304000-19309400	Weak transcription	Placenta	Placenta
6	chr10:19306400-19306600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:19306600-19307400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:19306600-19307400	Enhancers	Fetal Intestine Large	intestine
9	chr10:19306600-19307600	Enhancers	Fetal Intestine Small	intestine
10	chr10:19307600-19308000	Weak transcription	Fetal Intestine Small	intestine
11	chr10:19308000-19308400	Enhancers	Fetal Intestine Small	intestine
12	chr10:19309400-19310200	Enhancers	Placenta	Placenta
13	chr10:19309600-19310400	Enhancers	HepG2	liver
14	chr10:19309800-19310000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:19311400-19312000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:19311600-19312000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:19311600-19312000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr10:19311800-19312000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:19312200-19313200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:19313200-19313600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:19313600-19313800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:19317800-19318200	Enhancers	Fetal Heart	heart
23	chr10:19318200-19319800	Weak transcription	Fetal Heart	heart
24	chr10:19319200-19319600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:19319800-19321200	Enhancers	Fetal Heart	heart
26	chr10:19320200-19321200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:19322200-19323600	Enhancers	Fetal Intestine Large	intestine
28	chr10:19322600-19323600	Enhancers	Fetal Intestine Small	intestine
29	chr10:19323600-19335400	Weak transcription	Fetal Intestine Small	intestine
30	chr10:19331800-19332200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr10:19331800-19333000	Enhancers	Fetal Intestine Large	intestine
32	chr10:19332200-19333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:19333000-19335800	Weak transcription	Fetal Intestine Large	intestine
34	chr10:19333200-19333400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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