Variant report

Variant	nsv1039174
Chromosome Location	chr10:18474463-18493676
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 878 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:878 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182638580	chr10:18474464-18474465	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs556401344	chr10:18474477-18474478	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs142295755	chr10:18474576-18474577	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs186784831	chr10:18474588-18474589	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs553749046	chr10:18474609-18474610	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs572063979	chr10:18474620-18474621	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs373747405	chr10:18474671-18474672	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs7924106	chr10:18474678-18474679	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs143820348	chr10:18474680-18474681	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs564804704	chr10:18474715-18474716	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs116080871	chr10:18474722-18474723	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs12355980	chr10:18474726-18474727	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs1779228	chr10:18474727-18474728	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
14	rs529786427	chr10:18474746-18474747	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs76977423	chr10:18474877-18474878	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs375964618	chr10:18474937-18474938	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs560190961	chr10:18474967-18474968	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs527241723	chr10:18474971-18474972	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs552917651	chr10:18474982-18474983	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs148156040	chr10:18474986-18474987	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs7081665	chr10:18475011-18475012	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs550343375	chr10:18475035-18475036	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs568509989	chr10:18475071-18475072	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs7067916	chr10:18475075-18475076	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
25	rs560270062	chr10:18475109-18475110	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs191204384	chr10:18475124-18475125	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs565753559	chr10:18475147-18475148	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs184857477	chr10:18475182-18475183	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs539419915	chr10:18475194-18475195	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs558453349	chr10:18475215-18475216	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs189275256	chr10:18475270-18475271	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs192918543	chr10:18475277-18475278	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs141952485	chr10:18475279-18475280	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs574500193	chr10:18475280-18475281	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs541952471	chr10:18475305-18475306	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs368131698	chr10:18475343-18475344	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs527302016	chr10:18475344-18475345	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs532488969	chr10:18475348-18475349	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs72271975	chr10:18475349-18475350	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs541633615	chr10:18475383-18475384	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs150659627	chr10:18475385-18475386	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs566184920	chr10:18475427-18475428	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs140843244	chr10:18475430-18475431	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs185088737	chr10:18475475-18475476	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs371577052	chr10:18475476-18475477	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs531710283	chr10:18475494-18475495	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs143091833	chr10:18475497-18475498	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs112447849	chr10:18475511-18475512	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs547508732	chr10:18475512-18475513	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs60661817	chr10:18475522-18475523	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal cancer	21851588	CNVD
Intracranial aneurysm	16715129	CNVD
Colorectal cancer	19287155	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:229 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18468400-18486000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:18469000-18486000	Weak transcription	Aorta	Aorta
3	chr10:18469200-18486000	Weak transcription	Fetal Intestine Small	intestine
4	chr10:18469400-18479000	Weak transcription	Right Ventricle	heart
5	chr10:18469400-18491200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:18469600-18474600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:18469600-18474800	Weak transcription	Brain Substantia Nigra	brain
8	chr10:18469600-18483200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:18469600-18486000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:18469800-18479200	Weak transcription	Left Ventricle	heart
11	chr10:18470200-18484000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr10:18470200-18484400	Weak transcription	Right Atrium	heart
13	chr10:18471200-18483000	Weak transcription	Fetal Stomach	stomach
14	chr10:18471400-18483600	Weak transcription	Fetal Lung	lung
15	chr10:18471600-18481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:18473200-18475000	Enhancers	Stomach Smooth Muscle	stomach
17	chr10:18473400-18475200	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr10:18473600-18475200	Enhancers	Pancreas	Pancrea
19	chr10:18473600-18475400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:18473600-18477400	Enhancers	Ovary	ovary
21	chr10:18473800-18475000	Enhancers	Rectal Smooth Muscle	rectum
22	chr10:18474000-18475000	Enhancers	Colon Smooth Muscle	Colon
23	chr10:18474400-18474600	Enhancers	Brain Angular Gyrus	brain
24	chr10:18474400-18474800	Enhancers	Fetal Heart	heart
25	chr10:18474600-18475000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr10:18474800-18475000	Enhancers	Brain Substantia Nigra	brain
27	chr10:18474800-18478600	Weak transcription	Fetal Heart	heart
28	chr10:18475000-18481000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr10:18475200-18479000	Weak transcription	Pancreas	Pancrea
30	chr10:18475200-18491600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:18475400-18479800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:18476800-18477400	Enhancers	Spleen	Spleen
33	chr10:18477200-18477400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr10:18477400-18478800	Weak transcription	Ovary	ovary
35	chr10:18478600-18480400	Enhancers	Fetal Heart	heart
36	chr10:18478800-18479400	Strong transcription	Ovary	ovary
37	chr10:18479000-18479400	Enhancers	Pancreas	Pancrea
38	chr10:18479000-18479400	Enhancers	Right Ventricle	heart
39	chr10:18479200-18479400	Enhancers	Left Ventricle	heart
40	chr10:18479400-18479600	Weak transcription	Left Ventricle	heart
41	chr10:18479400-18483000	Weak transcription	Ovary	ovary
42	chr10:18479400-18484200	Weak transcription	Right Ventricle	heart
43	chr10:18479600-18480000	Enhancers	Left Ventricle	heart
44	chr10:18479800-18483200	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr10:18480000-18484400	Weak transcription	Left Ventricle	heart
46	chr10:18480400-18484000	Weak transcription	Fetal Heart	heart
47	chr10:18481000-18481800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:18481000-18481800	Strong transcription	Stomach Smooth Muscle	stomach
49	chr10:18481800-18483400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr10:18481800-18490200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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