Variant report

Variant	nsv1039615
Chromosome Location	chr15:39118263-39157687
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:39154715..39156737-chr15:39157006..39160001,2	MCF-7	breast:
2	chr15:39154715..39156737-chr15:39157006..39160001,2	MCF-7	breast:
3	chr15:39109782..39110594-chr15:39145267..39146966,11	MCF-7	breast:
4	chr15:39154049..39156487-chr15:39159753..39161906,2	K562	blood:
5	chr15:39109578..39110474-chr15:39145706..39146406,3	MCF-7	breast:
6	chr15:38999973..39000632-chr15:39145568..39146483,2	K562	blood:
7	chr15:39148707..39150798-chr15:39158267..39160770,2	MCF-7	breast:
8	chr15:39149816..39152151-chr15:39367805..39370175,2	K562	blood:
9	chr15:39109642..39110205-chr15:39156134..39156758,2	MCF-7	breast:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FSIP1-5	chr15:39156696-39157923	XLOC_011434
2	lnc-FSIP1-5	chr15:39157523-39157923	ENSG00000259345.1
3	lnc-FSIP1-4	chr15:39157029-39157923	NONHSAT041724

No data

Extended variants
information (count: 1315 )
Associated
traits (count: 71 )

Variant overlapped rSNPs/rCNVs (count:1315 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs141080451	chr15:39118263-39118264	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs149845522	chr15:39118292-39118293	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs373106536	chr15:39118311-39118312	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs117080763	chr15:39118318-39118319	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs574871762	chr15:39118320-39118321	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs542287922	chr15:39118349-39118350	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs145483966	chr15:39118388-39118389	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs182830418	chr15:39118389-39118390	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs546121624	chr15:39118446-39118447	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs564418064	chr15:39118448-39118449	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs527540723	chr15:39118458-39118459	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs543674325	chr15:39118488-39118489	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs150374235	chr15:39118505-39118506	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs964879	chr15:39118522-39118523	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs528998769	chr15:39118533-39118534	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs547438693	chr15:39118549-39118550	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs565552578	chr15:39118555-39118556	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs532722547	chr15:39118567-39118568	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs73394182	chr15:39118575-39118576	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs79679769	chr15:39118623-39118624	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs35923399	chr15:39118649-39118650	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs538134166	chr15:39118650-39118651	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs556508608	chr15:39118684-39118685	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs62006277	chr15:39118687-39118688	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs549151832	chr15:39118738-39118739	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs35627860	chr15:39118750-39118751	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs561038494	chr15:39118755-39118756	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs572567843	chr15:39118760-39118761	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs546258130	chr15:39118766-39118767	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs373213111	chr15:39118769-39118770	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs576430546	chr15:39118773-39118774	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs377616561	chr15:39118782-39118783	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs543710122	chr15:39118808-39118809	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs115493792	chr15:39118831-39118832	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs201783246	chr15:39118844-39118845	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs529046953	chr15:39118863-39118864	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs540774558	chr15:39118866-39118867	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs370987778	chr15:39118907-39118908	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559448663	chr15:39118910-39118911	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs371800901	chr15:39119049-39119050	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs574157888	chr15:39119063-39119064	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532856754	chr15:39119106-39119107	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs375836762	chr15:39119217-39119218	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs187680329	chr15:39119256-39119257	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs562923258	chr15:39119269-39119270	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs531904460	chr15:39119286-39119287	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs550408840	chr15:39119293-39119294	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs77434256	chr15:39119310-39119311	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs531593077	chr15:39119326-39119327	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs117278598	chr15:39119347-39119348	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:71)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Cancer	20164920	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21129771	CNVD
Breast cancer	21045282	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	22032731	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:279 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39112600-39119000	Weak transcription	Fetal Lung	lung
2	chr15:39115800-39120400	Weak transcription	Osteobl	bone
3	chr15:39116200-39118800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:39116200-39120000	Enhancers	HUVEC	blood vessel
5	chr15:39118800-39119400	Enhancers	Fetal Brain Female	brain
6	chr15:39118800-39119400	Enhancers	Right Atrium	heart
7	chr15:39118800-39119800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:39118800-39121200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr15:39119000-39121200	Enhancers	Fetal Lung	lung
10	chr15:39119200-39119800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:39119200-39120000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:39119200-39121200	Enhancers	Fetal Heart	heart
13	chr15:39119400-39120000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:39119400-39120600	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr15:39119400-39122000	Weak transcription	Right Atrium	heart
16	chr15:39119800-39120000	Enhancers	Fetal Stomach	stomach
17	chr15:39119800-39120200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:39120000-39120400	Flanking Active TSS	HUVEC	blood vessel
19	chr15:39120000-39120600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:39120000-39121000	Enhancers	NHLF	lung
21	chr15:39120000-39121200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:39120200-39120400	Enhancers	HSMM	muscle
23	chr15:39120200-39120800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr15:39120200-39120800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:39120200-39120800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr15:39120400-39120800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr15:39120400-39120800	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr15:39120400-39120800	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr15:39120400-39120800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr15:39120400-39120800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr15:39120400-39121000	Enhancers	Ovary	ovary
32	chr15:39120400-39121000	Enhancers	NH-A	brain
33	chr15:39120400-39121000	Enhancers	Osteobl	bone
34	chr15:39120400-39121200	Enhancers	HSMMtube	muscle
35	chr15:39120400-39123000	Enhancers	HUVEC	blood vessel
36	chr15:39120600-39120800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:39120600-39120800	Enhancers	Fetal Stomach	stomach
38	chr15:39120600-39121000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:39120600-39121200	Enhancers	NHDF-Ad	bronchial
40	chr15:39121000-39121200	Enhancers	HSMM	muscle
41	chr15:39121200-39122200	Weak transcription	Fetal Lung	lung
42	chr15:39121200-39122400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:39122000-39122200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:39122000-39122200	Enhancers	Right Atrium	heart
45	chr15:39122200-39122400	Enhancers	Fetal Lung	lung
46	chr15:39122400-39122600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr15:39132800-39133200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr15:39134000-39136000	Enhancers	HSMMtube	muscle
49	chr15:39134000-39136000	Enhancers	HUVEC	blood vessel
50	chr15:39134000-39139600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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