Variant report

Variant	nsv1039857
Chromosome Location	chr10:43207270-43246796
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:107)
CpG islands
(count:244)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:107 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr10:43234242-43234371	K562	blood:	n/a	n/a
2	ATF1	chr10:43239265-43239373	K562	blood:	n/a	n/a
3	BATF	chr10:43218973-43219261	GM12878	blood:	n/a	n/a
4	CBX3	chr10:43236980-43237313	K562	blood:	n/a	n/a
5	CBX3	chr10:43237046-43237288	K562	blood:	n/a	n/a
6	CEBPB	chr10:43239152-43239453	K562	blood:	n/a	chr10:43239295-43239306
7	CEBPB	chr10:43230108-43230288	K562	blood:	n/a	n/a
8	CEBPB	chr10:43239156-43239359	HepG2	liver:	n/a	chr10:43239295-43239306
9	CEBPB	chr10:43239164-43239414	K562	blood:	n/a	chr10:43239295-43239306
10	CEBPB	chr10:43230096-43230321	MCF-7	breast:	n/a	n/a
11	CTCF	chr10:43239660-43239810	WERI-Rb-1	eye:	n/a	n/a
12	CTCF	chr10:43239680-43239830	BE2_C	brain:	n/a	n/a
13	CTCF	chr10:43235596-43235668	Lung_OC	lung:	n/a	n/a
14	CTCF	chr10:43239760-43239910	K562	blood:	n/a	n/a
15	CTCF	chr10:43239756-43239821	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr10:43239720-43239870	HEK293	kidney:	n/a	n/a
17	CTCF	chr10:43239740-43239890	Hela-S3	cervix:	n/a	n/a
18	CTCF	chr10:43227830-43227915	MCF-7	breast:	n/a	n/a
19	CTCF	chr10:43240069-43240144	GM13976	blood:	n/a	n/a
20	CTCF	chr10:43245755-43245784	Lung_OC	lung:	n/a	n/a
21	CTCF	chr10:43239720-43239870	BE2_C	brain:	n/a	n/a
22	CTCF	chr10:43220104-43220263	K562	blood:	n/a	chr10:43220223-43220232
23	CTCF	chr10:43239660-43239810	HCT-116	colon:	n/a	n/a
24	CTCF	chr10:43207580-43207595	GM13976	blood:	n/a	n/a
25	CTCF	chr10:43239703-43239843	HepG2	liver:	n/a	n/a
26	CTCF	chr10:43239620-43239770	HCT-116	colon:	n/a	n/a
27	CTCF	chr10:43239660-43239810	HepG2	liver:	n/a	n/a
28	CTCF	chr10:43239720-43239870	GM12872	blood:	n/a	n/a
29	CTCF	chr10:43227840-43227846	MCF-7	breast:	n/a	n/a
30	CTCF	chr10:43242232-43242249	GM10266	blood:	n/a	n/a
31	CTCF	chr10:43239660-43239810	HMEC	breast:	n/a	n/a
32	CTCF	chr10:43220211-43220224	LNCaP	prostate:	n/a	n/a
33	CTCF	chr10:43232000-43232019	GM13976	blood:	n/a	n/a
34	CTCF	chr10:43239680-43239830	A549	lung:	n/a	n/a
35	CTCF	chr10:43239660-43239810	AoAF	blood vessel:	n/a	n/a
36	CTCF	chr10:43239700-43239850	Caco-2	colon:	n/a	n/a
37	CTCF	chr10:43239700-43239850	K562	blood:	n/a	n/a
38	CTCF	chr10:43239720-43239870	MCF-7	breast:	n/a	n/a
39	CTCF	chr10:43228363-43228436	GM13976	blood:	n/a	n/a
40	CTCF	chr10:43227852-43227855	MCF-7	breast:	n/a	n/a
41	CTCF	chr10:43239640-43239790	HCFaa	heart:	n/a	n/a
42	CTCF	chr10:43239740-43239890	NB4	blood:	n/a	n/a
43	CTCF	chr10:43239720-43239870	AG04450	lung:	n/a	n/a
44	CTCF	chr10:43239700-43239850	SK-N-SH_RA	brain:	n/a	n/a
45	CTCF	chr10:43239713-43239845	K562	blood:	n/a	n/a
46	CTCF	chr10:43239540-43239810	HMF	breast:	n/a	n/a
47	CTCF	chr10:43239640-43239790	GM12873	blood:	n/a	n/a
48	CTCF	chr10:43239800-43239950	RPTEC	kidney:	n/a	n/a
49	CTCF	chr10:43239700-43239850	GM12870	blood:	n/a	n/a
50	CTCF	chr10:43214038-43214096	GM13976	blood:	n/a	n/a

(count:244 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:43209934-43209984	BJ	skin:	n/a
2	chr10:43216927-43216977	LNCaP	prostate:	n/a
3	chr10:43209934-43209984	SK-N-SH	brain:	n/a
4	chr10:43245080-43245130	HAEpiC	amniotic membrane:	n/a
5	chr10:43209934-43209984	SKMC	muscle:	n/a
6	chr10:43216927-43216977	HCM	heart:	n/a
7	chr10:43216927-43216977	GM12878	blood:	n/a
8	chr10:43245080-43245130	IMR90	lung:	fetal
9	chr10:43209934-43209984	ovcar-3	ovarian:	n/a
10	chr10:43215944-43215994	Hepatocyte	liver:	n/a
11	chr10:43245080-43245130	HCT-116	colon:	n/a
12	chr10:43216927-43216977	SK-N-SH_RA	brain:	n/a
13	chr10:43209934-43209984	HL-60	blood:	n/a
14	chr10:43216927-43216977	HRCEpiC	kidney:	n/a
15	chr10:43215944-43215994	MCF10A-Er-Src	breast:	n/a
16	chr10:43245080-43245130	HEK293	kidney:	embryo
17	chr10:43209934-43209984	U87	brain:	n/a
18	chr10:43245080-43245130	NHDF-neo	bronchial:	n/a
19	chr10:43209934-43209984	NHBE	bronchial:	n/a
20	chr10:43245080-43245130	SK-N-MC	brain:	n/a
21	chr10:43216927-43216977	RPTEC	kidney:	n/a
22	chr10:43209934-43209984	Hepatocyte	liver:	n/a
23	chr10:43216927-43216977	HCPEpiC	choroid plexus:	n/a
24	chr10:43245080-43245130	Jurkat	blood:	n/a
25	chr10:43245080-43245130	PrEC	prostate:	n/a
26	chr10:43216927-43216977	HNPCEpiC	eye:	n/a
27	chr10:43215944-43215994	SK-N-SH	brain:	n/a
28	chr10:43216927-43216977	NB4	blood:	n/a
29	chr10:43216927-43216977	U87	brain:	n/a
30	chr10:43216927-43216977	NH-A	brain:	n/a
31	chr10:43209934-43209984	HPAEpiC	pulmonary alveolar:	n/a
32	chr10:43216927-43216977	HRPEpiC	eye:	n/a
33	chr10:43216927-43216977	SAEC	small airway:	n/a
34	chr10:43209934-43209984	HRE	kidney:	n/a
35	chr10:43216927-43216977	PANC-1	pancreas:	n/a
36	chr10:43209934-43209984	RPTEC	kidney:	n/a
37	chr10:43245080-43245130	GM06990	blood:	n/a
38	chr10:43209934-43209984	HEEpiC	esophagus:	n/a
39	chr10:43216927-43216977	HEEpiC	esophagus:	n/a
40	chr10:43215944-43215994	BE2_C	brain:	n/a
41	chr10:43216927-43216977	GM19239	blood:	n/a
42	chr10:43215944-43215994	HRPEpiC	eye:	n/a
43	chr10:43215944-43215994	HMEC	breast:	n/a
44	chr10:43216927-43216977	AG10803	skin:	n/a
45	chr10:43215944-43215994	ovcar-3	ovarian:	n/a
46	chr10:43245080-43245130	U87	brain:	n/a
47	chr10:43215944-43215994	HEEpiC	esophagus:	n/a
48	chr10:43215944-43215994	HPAEpiC	pulmonary alveolar:	n/a
49	chr10:43215944-43215994	HRCEpiC	kidney:	n/a
50	chr10:43215944-43215994	IMR90	lung:	fetal

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43245352..43247530-chr10:43276802..43279739,2	K562	blood:
2	chr10:43228372..43230638-chr10:43276090..43278496,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF33B-2	chr10:43246626-43247593	ENSG00000259869.1
2	lnc-BMS1-4	chr10:43236406-43236520	NONHSAT012928
3	lnc-BMS1-4	chr10:43237124-43237260	NONHSAT012928
4	lnc-BMS1-4	chr10:43236053-43236103	NONHSAT012928

No data

Variant related genes	Relation type
RSU1P1	TF binding region
DUXAP3	TF binding region
CUBNP1	TF binding region
RSU1P1	CpG island
DUXAP3	CpG island
CUBNP1	CpG island
ENSG00000165733	chromatin interactions

Extended variants
information (count: 810 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:810 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112764730	chr10:43210074-43210075	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs182832049	chr10:43210077-43210078	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs576826357	chr10:43210079-43210080	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs7896645	chr10:43210085-43210086	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs187735496	chr10:43210092-43210093	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs145956292	chr10:43210098-43210099	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs192879410	chr10:43210154-43210155	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs560292118	chr10:43210163-43210164	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs374322788	chr10:43210207-43210208	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs34049608	chr10:43210220-43210221	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs149320003	chr10:43210239-43210240	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs552039312	chr10:43210267-43210268	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs139919736	chr10:43210289-43210290	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs546671085	chr10:43210399-43210400	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs570751757	chr10:43210423-43210424	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs114248688	chr10:43210505-43210506	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs568368605	chr10:43210575-43210576	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs535859463	chr10:43210595-43210596	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs539241238	chr10:43210599-43210600	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs74137932	chr10:43210608-43210609	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs529351151	chr10:43210638-43210639	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs539613791	chr10:43210643-43210644	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs34209305	chr10:43210644-43210645	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs184093991	chr10:43210666-43210667	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs151231614	chr10:43210687-43210688	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs139189280	chr10:43210691-43210692	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs556186192	chr10:43210705-43210706	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs115575094	chr10:43210722-43210723	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs569126927	chr10:43210731-43210732	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs560026593	chr10:43210739-43210740	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
31	rs572121007	chr10:43210744-43210745	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
32	rs545564181	chr10:43210746-43210747	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
33	rs563942386	chr10:43210748-43210749	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
34	rs2505891	chr10:43210751-43210752	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	mRNA abundance
35	rs549702131	chr10:43210759-43210760	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
36	rs149950913	chr10:43210765-43210766	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
37	rs147881567	chr10:43210786-43210787	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
38	rs188629948	chr10:43210791-43210792	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
39	rs150205885	chr10:43210793-43210794	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
40	rs574448338	chr10:43210818-43210819	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
41	rs35970240	chr10:43210828-43210829	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
42	rs547851917	chr10:43210854-43210855	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
43	rs12217946	chr10:43210870-43210871	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs12217310	chr10:43210881-43210882	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs533829954	chr10:43210882-43210883	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs12217680	chr10:43210884-43210885	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs570660803	chr10:43210911-43210912	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs372312445	chr10:43210927-43210928	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs377049570	chr10:43210942-43210943	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs555815091	chr10:43210958-43210959	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43212600-43213000	Enhancers	Spleen	Spleen
2	chr10:43212800-43213000	Enhancers	HepG2	liver
3	chr10:43213000-43215800	Weak transcription	Spleen	Spleen
4	chr10:43215800-43216200	ZNF genes & repeats	Spleen	Spleen
5	chr10:43217600-43218000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:43227800-43228000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:43227800-43228000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr10:43230000-43230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:43232600-43235200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:43233200-43235600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:43235200-43235400	Enhancers	Gastric	stomach
12	chr10:43241400-43241600	Enhancers	K562	blood
13	chr10:43241600-43242400	Active TSS	K562	blood

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