Variant report

Variant	nsv1040087
Chromosome Location	chr10:19290710-19323913
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 651 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:651 , 50 per page) page: 1 2 3 4 5 6 7 ... 14

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10508572	chr10:19290710-19290711	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs527649634	chr10:19290719-19290720	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs76367707	chr10:19290762-19290763	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs369730318	chr10:19290763-19290764	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs575174211	chr10:19290785-19290786	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs191594105	chr10:19296003-19296004	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs535618833	chr10:19296010-19296011	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs575307482	chr10:19296048-19296049	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs147221396	chr10:19296059-19296060	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs559312711	chr10:19296082-19296083	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs184475828	chr10:19296107-19296108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs552428715	chr10:19296121-19296122	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs148705590	chr10:19296164-19296165	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs190504731	chr10:19296184-19296185	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs372503972	chr10:19296200-19296201	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs550463978	chr10:19296203-19296204	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs568756367	chr10:19296235-19296236	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs193240213	chr10:19296236-19296237	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs12772717	chr10:19296254-19296255	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs566184139	chr10:19296262-19296263	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs546271030	chr10:19296271-19296272	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs142285514	chr10:19296273-19296274	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs185423680	chr10:19296278-19296279	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs150842644	chr10:19296287-19296288	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs536662702	chr10:19296347-19296348	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs113090760	chr10:19296373-19296374	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs554978177	chr10:19296378-19296379	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs573577293	chr10:19296384-19296385	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs546313877	chr10:19302615-19302616	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs151117419	chr10:19302671-19302672	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs11008082	chr10:19302728-19302729	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs192804757	chr10:19302735-19302736	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs75476572	chr10:19302737-19302738	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs569086136	chr10:19302744-19302745	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs537105346	chr10:19302772-19302773	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs116344832	chr10:19302789-19302790	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs573914471	chr10:19302809-19302810	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs534999797	chr10:19302826-19302827	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs552974201	chr10:19302831-19302832	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs577910509	chr10:19302860-19302861	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs139427636	chr10:19302871-19302872	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs563716817	chr10:19302872-19302873	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs184916492	chr10:19302885-19302886	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs9663964	chr10:19302939-19302940	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs566665645	chr10:19302952-19302953	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs189524992	chr10:19302954-19302955	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs112536571	chr10:19302974-19302975	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs12770262	chr10:19302983-19302984	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs561024617	chr10:19302999-19303000	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs142824885	chr10:19303012-19303013	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19290400-19290800	Enhancers	Hela-S3	cervix
2	chr10:19296000-19296400	Enhancers	Placenta	Placenta
3	chr10:19302600-19303000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr10:19302800-19303400	Enhancers	NH-A	brain
5	chr10:19303800-19304000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:19303800-19304000	Enhancers	Placenta	Placenta
7	chr10:19304000-19309400	Weak transcription	Placenta	Placenta
8	chr10:19306400-19306600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:19306600-19307400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:19306600-19307400	Enhancers	Fetal Intestine Large	intestine
11	chr10:19306600-19307600	Enhancers	Fetal Intestine Small	intestine
12	chr10:19307600-19308000	Weak transcription	Fetal Intestine Small	intestine
13	chr10:19308000-19308400	Enhancers	Fetal Intestine Small	intestine
14	chr10:19309400-19310200	Enhancers	Placenta	Placenta
15	chr10:19309600-19310400	Enhancers	HepG2	liver
16	chr10:19309800-19310000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:19311400-19312000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr10:19311600-19312000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr10:19311600-19312000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr10:19311800-19312000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:19312200-19313200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:19313200-19313600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr10:19313600-19313800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:19317800-19318200	Enhancers	Fetal Heart	heart
25	chr10:19318200-19319800	Weak transcription	Fetal Heart	heart
26	chr10:19319200-19319600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:19319800-19321200	Enhancers	Fetal Heart	heart
28	chr10:19320200-19321200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr10:19322200-19323600	Enhancers	Fetal Intestine Large	intestine
30	chr10:19322600-19323600	Enhancers	Fetal Intestine Small	intestine
31	chr10:19323600-19335400	Weak transcription	Fetal Intestine Small	intestine

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