Variant report

Variant	nsv1040613
Chromosome Location	chr10:19663242-19686211
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1012 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:1012 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs147579026	chr10:19663254-19663255	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs554821421	chr10:19663259-19663260	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs573111827	chr10:19663280-19663281	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs367565321	chr10:19663335-19663336	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs115256638	chr10:19663345-19663346	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs567984246	chr10:19663371-19663372	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs569277838	chr10:19663445-19663446	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs559934327	chr10:19663479-19663480	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529152944	chr10:19663486-19663487	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs578026953	chr10:19663506-19663507	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs539936923	chr10:19663507-19663508	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs142086158	chr10:19663516-19663517	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs531250532	chr10:19663615-19663616	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs150121131	chr10:19663628-19663629	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs138581073	chr10:19663638-19663639	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528705207	chr10:19663728-19663729	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs1889520	chr10:19663737-19663738	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
18	rs190567124	chr10:19663770-19663771	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs566656666	chr10:19663796-19663797	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs1889521	chr10:19663851-19663852	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
21	rs181931781	chr10:19663865-19663866	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs79401866	chr10:19663893-19663894	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs149308666	chr10:19663904-19663905	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs554932770	chr10:19663905-19663906	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs143601536	chr10:19663907-19663908	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs573173300	chr10:19663910-19663911	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs534021001	chr10:19663932-19663933	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs186301945	chr10:19663938-19663939	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs578052129	chr10:19663970-19663971	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs555603874	chr10:19663973-19663974	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs138131223	chr10:19664018-19664019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs570101741	chr10:19664075-19664076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs142728511	chr10:19664113-19664114	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs573811592	chr10:19664150-19664151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs190689356	chr10:19664175-19664176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542607073	chr10:19664182-19664183	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs537172207	chr10:19664195-19664196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs561285023	chr10:19664202-19664203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs538180152	chr10:19664210-19664211	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs528717249	chr10:19664229-19664230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs181503002	chr10:19664230-19664231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs565310801	chr10:19664244-19664245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs532252136	chr10:19664283-19664284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs111775641	chr10:19664290-19664291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs577592379	chr10:19664300-19664301	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs555689753	chr10:19664303-19664304	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs573962289	chr10:19664314-19664315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs186474568	chr10:19664351-19664352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs544685952	chr10:19664353-19664354	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs529762530	chr10:19664375-19664376	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Myelofibrosis	22110671	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Epilepsy	22083797	CNVD
Olfactory neuroblastoma	18408657	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute lymphoblastic leukemia	18458336	CNVD

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19658000-19674000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:19662400-19663800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr10:19662400-19664000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:19662600-19663600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:19662600-19663800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr10:19662600-19663800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr10:19662600-19678400	Weak transcription	Fetal Intestine Small	intestine
8	chr10:19662800-19663400	Enhancers	Brain Germinal Matrix	brain
9	chr10:19674000-19674200	Enhancers	Liver	Liver
10	chr10:19674000-19675800	Enhancers	Fetal Intestine Large	intestine
11	chr10:19674000-19675800	Enhancers	HepG2	liver
12	chr10:19674200-19674400	Flanking Active TSS	Liver	Liver
13	chr10:19674400-19674600	Active TSS	Liver	Liver
14	chr10:19674600-19676000	Enhancers	Liver	Liver
15	chr10:19675000-19675200	Active TSS	Duodenum Mucosa	Duodenum
16	chr10:19675200-19676800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:19675800-19676600	Weak transcription	Fetal Intestine Large	intestine
18	chr10:19675800-19680800	Weak transcription	HepG2	liver
19	chr10:19676600-19676800	Genic enhancers	Fetal Intestine Large	intestine
20	chr10:19676800-19680000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr10:19676800-19681000	Strong transcription	Fetal Intestine Large	intestine
22	chr10:19678400-19679000	Strong transcription	Fetal Intestine Small	intestine
23	chr10:19679000-19680400	Weak transcription	Fetal Intestine Small	intestine
24	chr10:19680000-19694200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:19680400-19681000	Strong transcription	Fetal Intestine Small	intestine
26	chr10:19681000-19687800	Weak transcription	Fetal Intestine Large	intestine
27	chr10:19681000-19728200	Weak transcription	Fetal Intestine Small	intestine
28	chr10:19681800-19682000	Enhancers	Small Intestine	intestine
29	chr10:19684200-19684600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr10:19684200-19684600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr10:19684200-19685000	Enhancers	HUES48 Cell Line	embryonic stem cell

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