Variant report

Variant	nsv1040882
Chromosome Location	chr9:140615894-140810534
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3399)
CpG islands
(count:4768)
Chromatin interactive
region (count:104)
LncRNA
region (count:20)
Mature miRNA
region (count: 1)
miRNA target
sites (count:3)

(count:3399 , 50 per page) page: 1 2 3 4 5 6 7 ... 68

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr9:140655366-140655982	GM12878	blood:	n/a	n/a
2	ATF2	chr9:140656647-140657415	GM12878	blood:	n/a	n/a
3	ATF2	chr9:140761215-140761514	GM12878	blood:	n/a	n/a
4	ATF2	chr9:140653453-140654075	GM12878	blood:	n/a	n/a
5	ATF2	chr9:140653486-140653886	GM12878	blood:	n/a	n/a
6	ATF2	chr9:140615735-140616429	GM12878	blood:	n/a	n/a
7	ATF2	chr9:140639148-140639804	GM12878	blood:	n/a	n/a
8	ATF2	chr9:140632555-140633044	GM12878	blood:	n/a	n/a
9	ATF2	chr9:140641009-140641568	GM12878	blood:	n/a	chr9:140641502-140641509
10	ATF2	chr9:140655367-140655871	GM12878	blood:	n/a	n/a
11	ATF2	chr9:140703449-140703804	GM12878	blood:	n/a	n/a
12	ATF2	chr9:140656794-140657321	GM12878	blood:	n/a	n/a
13	ATF2	chr9:140639968-140640492	GM12878	blood:	n/a	n/a
14	ATF2	chr9:140710777-140711402	GM12878	blood:	n/a	n/a
15	ATF2	chr9:140641019-140641614	GM12878	blood:	n/a	chr9:140641502-140641509
16	ATF2	chr9:140710782-140711539	GM12878	blood:	n/a	n/a
17	ATF2	chr9:140639164-140639781	GM12878	blood:	n/a	n/a
18	ATF2	chr9:140651891-140652508	GM12878	blood:	n/a	n/a
19	ATF2	chr9:140632651-140633030	GM12878	blood:	n/a	n/a
20	ATF2	chr9:140615932-140616395	GM12878	blood:	n/a	n/a
21	ATF3	chr9:140772113-140772351	H1-hESC	embryonic stem cell:	n/a	chr9:140772176-140772196
22	ATF3	chr9:140772100-140772314	K562	blood:	n/a	chr9:140772176-140772196
23	BACH1	chr9:140618399-140618691	H1-hESC	embryonic stem cell:	n/a	n/a
24	BACH1	chr9:140778170-140778249	H1-hESC	embryonic stem cell:	n/a	n/a
25	BACH1	chr9:140640020-140640565	H1-hESC	embryonic stem cell:	n/a	chr9:140640362-140640376
26	BACH1	chr9:140640186-140640518	K562	blood:	n/a	chr9:140640362-140640376
27	BACH1	chr9:140773050-140773062	H1-hESC	embryonic stem cell:	n/a	n/a
28	BATF	chr9:140655479-140655850	GM12878	blood:	n/a	n/a
29	BATF	chr9:140710702-140711592	GM12878	blood:	n/a	chr9:140711120-140711131
30	BATF	chr9:140641136-140641560	GM12878	blood:	n/a	chr9:140641365-140641374
31	BATF	chr9:140656857-140657244	GM12878	blood:	n/a	n/a
32	BATF	chr9:140761031-140761428	GM12878	blood:	n/a	n/a
33	BATF	chr9:140710900-140711326	GM12878	blood:	n/a	chr9:140711120-140711131
34	BATF	chr9:140632724-140633315	GM12878	blood:	n/a	n/a
35	BATF	chr9:140731105-140731321	GM12878	blood:	n/a	n/a
36	BATF	chr9:140641077-140641535	GM12878	blood:	n/a	chr9:140641365-140641374
37	BATF	chr9:140639922-140640464	GM12878	blood:	n/a	n/a
38	BATF	chr9:140639192-140639625	GM12878	blood:	n/a	n/a
39	BATF	chr9:140768772-140769151	GM12878	blood:	n/a	n/a
40	BATF	chr9:140768794-140769134	GM12878	blood:	n/a	n/a
41	BATF	chr9:140747930-140748125	GM12878	blood:	n/a	n/a
42	BATF	chr9:140620781-140621220	GM12878	blood:	n/a	n/a
43	BCL11A	chr9:140655419-140655822	GM12878	blood:	n/a	n/a
44	BCL11A	chr9:140653509-140653972	GM12878	blood:	n/a	chr9:140653758-140653767
45	BCL11A	chr9:140652026-140652377	GM12878	blood:	n/a	n/a
46	BCL11A	chr9:140632625-140633320	GM12878	blood:	n/a	n/a
47	BCL11A	chr9:140641138-140641493	GM12878	blood:	n/a	n/a
48	BCL11A	chr9:140641106-140641493	GM12878	blood:	n/a	n/a
49	BCL11A	chr9:140639203-140639643	GM12878	blood:	n/a	chr9:140639398-140639407
50	BCL11A	chr9:140720112-140720348	GM12878	blood:	n/a	chr9:140720260-140720269

(count:4768 , 50 per page) page: 1 2 3 4 5 6 7 ... 96

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:140725587-140725637	LNCaP	prostate:	n/a
2	chr9:140711975-140712025	GM06990	blood:	n/a
3	chr9:140727571-140727621	RPTEC	kidney:	n/a
4	chr9:140658436-140658486	HAEpiC	amniotic membrane:	n/a
5	chr9:140727297-140727347	HPAEpiC	pulmonary alveolar:	n/a
6	chr9:140768247-140768297	HUVEC	blood vessel:	n/a
7	chr9:140730317-140730367	SK-N-SH_RA	brain:	n/a
8	chr9:140773147-140773197	HL-60	blood:	n/a
9	chr9:140708214-140708264	HMEC	breast:	n/a
10	chr9:140775041-140775091	LNCaP	prostate:	n/a
11	chr9:140725587-140725637	LNCaP	prostate:	n/a
12	chr9:140711975-140712025	GM06990	blood:	n/a
13	chr9:140727571-140727621	RPTEC	kidney:	n/a
14	chr9:140658436-140658486	HAEpiC	amniotic membrane:	n/a
15	chr9:140727297-140727347	HPAEpiC	pulmonary alveolar:	n/a
16	chr9:140768247-140768297	HUVEC	blood vessel:	n/a
17	chr9:140730317-140730367	SK-N-SH_RA	brain:	n/a
18	chr9:140773147-140773197	HL-60	blood:	n/a
19	chr9:140708214-140708264	HMEC	breast:	n/a
20	chr9:140775041-140775091	LNCaP	prostate:	n/a
21	chr9:140681131-140681181	HCPEpiC	choroid plexus:	n/a
22	chr9:140681131-140681181	MCF10A-Er-Src	breast:	n/a
23	chr9:140735058-140735108	PFSK-1	brain:	n/a
24	chr9:140780551-140780601	HRCEpiC	kidney:	n/a
25	chr9:140709033-140709083	HIPEpiC	eye:	n/a
26	chr9:140671200-140671250	ECC-1	luminal epithelium:	n/a
27	chr9:140725898-140725948	NHDF-neo	bronchial:	n/a
28	chr9:140733980-140734030	NHDF-neo	bronchial:	n/a
29	chr9:140656981-140657031	HIPEpiC	eye:	n/a
30	chr9:140683797-140683847	ECC-1	luminal epithelium:	n/a
31	chr9:140727571-140727621	GM12891	blood:	n/a
32	chr9:140684842-140684892	HPAEpiC	pulmonary alveolar:	n/a
33	chr9:140673936-140673986	T-47D	breast:	n/a
34	chr9:140647870-140647920	Hela-S3	cervix:	n/a
35	chr9:140728491-140728541	CMK	blood:	n/a
36	chr9:140780551-140780601	U87	brain:	n/a
37	chr9:140771599-140771649	HRPEpiC	eye:	n/a
38	chr9:140673936-140673986	SK-N-MC	brain:	n/a
39	chr9:140704065-140704115	BE2_C	brain:	n/a
40	chr9:140735359-140735409	SK-N-SH	brain:	n/a
41	chr9:140676141-140676191	GM12878	blood:	n/a
42	chr9:140729712-140729762	NHDF-neo	bronchial:	n/a
43	chr9:140652711-140652761	SKMC	muscle:	n/a
44	chr9:140732731-140732781	HL-60	blood:	n/a
45	chr9:140731022-140731072	SK-N-MC	brain:	n/a
46	chr9:140773147-140773197	AG04450	lung:	fetal
47	chr9:140676853-140676903	LNCaP	prostate:	n/a
48	chr9:140683797-140683847	U87	brain:	n/a
49	chr9:140712932-140712982	NH-A	brain:	n/a
50	chr9:140687144-140687194	IMR90	lung:	fetal

(count:104 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr9:140620597..140623025-chr9:140630074..140631675,2	MCF-7	breast:
2	chr9:140625067..140626868-chr9:140630719..140633586,2	K562	blood:
3	chr14:100197709..100198229-chr9:140777193..140778054,2	MCF-7	breast:
4	chr9:140656494..140658049-chr9:140665141..140666954,2	MCF-7	breast:
5	chr9:140796431..140799040-chr9:140804864..140806682,2	K562	blood:
6	chr9:140645397..140647015-chr9:140648908..140650692,2	K562	blood:
7	chr9:140667645..140669335-chr9:140669650..140672274,2	K562	blood:
8	chr9:140763820..140766702-chr9:140806866..140808617,2	K562	blood:
9	chr9:140642217..140645455-chr9:140646960..140649880,4	K562	blood:
10	chr9:140621427..140624098-chr9:140634265..140635909,2	K562	blood:
11	chr9:140700980..140705198-chr9:140707876..140710677,3	K562	blood:
12	chr9:140636490..140638088-chr9:140638645..140641455,2	MCF-7	breast:
13	chr9:140621748..140624026-chr9:140624188..140625814,2	K562	blood:
14	chr9:140649627..140652485-chr9:140655729..140657732,2	MCF-7	breast:
15	chr9:140589041..140590820-chr9:140640169..140641796,2	K562	blood:
16	chr9:140770577..140775862-chr9:140777147..140782162,8	K562	blood:
17	chr9:140692420..140694081-chr9:140698871..140701591,2	K562	blood:
18	chr9:140627655..140630177-chr9:140631904..140633862,2	K562	blood:
19	chr9:140471859..140474511-chr9:140624763..140627467,2	MCF-7	breast:
20	chr9:140611220..140612891-chr9:140615717..140617300,2	K562	blood:
21	chr9:140629371..140632191-chr9:140634538..140636839,2	K562	blood:
22	chr9:140778196..140781664-chr9:140782755..140784568,3	K562	blood:
23	chr9:140639569..140641263-chr9:140644746..140647470,2	MCF-7	breast:
24	chr9:140679440..140682132-chr9:140702994..140705523,2	K562	blood:
25	chr9:140512733..140514752-chr9:140658191..140660880,2	MCF-7	breast:
26	chr9:140567845..140570418-chr9:140651009..140653801,2	MCF-7	breast:
27	chr9:140797540..140799636-chr9:140804864..140807689,2	K562	blood:
28	chr9:140713786..140716725-chr9:140719882..140722951,3	K562	blood:
29	chr9:140620032..140621601-chr9:140644743..140646680,2	K562	blood:
30	chr9:140634880..140636428-chr9:140652392..140655145,2	MCF-7	breast:
31	chr9:140672962..140675618-chr9:140678748..140680768,2	K562	blood:
32	chr9:140620597..140623025-chr9:140630074..140631675,2	MCF-7	breast:
33	chr9:140634880..140636428-chr9:140652392..140655145,2	MCF-7	breast:
34	chr9:140718370..140720341-chr9:140724405..140727123,2	MCF-7	breast:
35	chr9:140447426..140450339-chr9:140645965..140648548,2	K562	blood:
36	chr9:140777999..140780667-chr9:140783373..140786900,7	MCF-7	breast:
37	chr9:140667645..140669335-chr9:140669650..140672274,2	K562	blood:
38	chr9:140720745..140725244-chr9:140725368..140729857,4	K562	blood:
39	chr9:140471797..140473910-chr9:140767835..140770122,2	K562	blood:
40	chr9:140625067..140626868-chr9:140630719..140633586,2	K562	blood:
41	chr9:140672962..140675618-chr9:140678748..140680768,2	K562	blood:
42	chr9:140621748..140624026-chr9:140624188..140625814,2	K562	blood:
43	chr9:140627704..140629672-chr9:140630272..140632120,2	MCF-7	breast:
44	chr9:140621172..140623675-chr9:140625261..140627208,2	MCF-7	breast:
45	chr9:140777999..140780667-chr9:140783373..140786900,7	MCF-7	breast:
46	chr9:140627655..140630177-chr9:140631904..140633862,2	K562	blood:
47	chr9:140656494..140658049-chr9:140665141..140666954,2	MCF-7	breast:
48	chr9:140763820..140766702-chr9:140806866..140808617,2	K562	blood:
49	chr9:140621172..140623675-chr9:140625261..140627208,2	MCF-7	breast:
50	chr9:140649627..140652485-chr9:140655729..140657732,2	MCF-7	breast:

(count:20 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL772363.1-4	chr9:140703295-140703875	NONHSAT135753
2	lnc-AL772363.1-1	chr9:140771009-140771749	XLOC_007904
3	lnc-AL772363.1-1	chr9:140771009-140771749	XLOC_007904
4	lnc-AL772363.1-1	chr9:140768516-140768684	XLOC_007904
5	lnc-AL772363.1-1	chr9:140769915-140770132	XLOC_007904
6	lnc-AL772363.1-1	chr9:140762365-140762689	XLOC_007904
7	lnc-AL772363.1-1	chr9:140769915-140770132	XLOC_007904
8	lnc-AL772363.1-1	chr9:140777289-140777454	ENSG00000203987.2
9	lnc-AL772363.1-1	chr9:140767517-140767710	XLOC_007904
10	lnc-AL772363.1-1	chr9:140768516-140768666	ENSG00000203987.2
11	lnc-AL772363.1-1	chr9:140762379-140762689	ENSG00000203987.2
12	lnc-AL772363.1-1	chr9:140769915-140770132	ENSG00000203987.2
13	lnc-AL772363.1-1	chr9:140784498-140787022	ENSG00000203987.2
14	lnc-AL772363.1-1	chr9:140768516-140768684	XLOC_007904
15	lnc-CACNA1B-4	chr9:140657474-140659224	NONHSAT135751
16	lnc-AL772363.1-5	chr9:140682117-140683139	NONHSAT135752
17	lnc-AL772363.1-1	chr9:140769915-140770844	XLOC_007904
18	lnc-AL772363.1-1	chr9:140762377-140762689	ENSG00000203987.2
19	lnc-AL772363.1-1	chr9:140767616-140767710	XLOC_007904
20	lnc-AL772363.1-1	chr9:140768516-140768684	XLOC_007904

miRNA name	Chromosome Location	mirBase accession
hsa-miR-602	chr9:140732886-140732908	MIMAT0003270

(count:3 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	EHMT1	hsa-miR-1	chr9:140730432-140730455
2	EHMT1	hsa-miR-615-3p	chr9:140729903-140729924
3	EHMT1	hsa-miR-30e-5p	chr9:140730456-140730473

Variant related genes	Relation type
CACNA1B	TF binding region
ENSG00000203987	TF binding region
MIR602	TF binding region
EHMT1	TF binding region
ENSG00000255585	TF binding region
CACNA1B	CpG island
ENSG00000203987	CpG island
MIR602	CpG island
EHMT1	CpG island
ENSG00000255585	CpG island
ENSG00000255585	chromatin interactions
ENSG00000148408	chromatin interactions
ENSG00000207693	chromatin interactions
ENSG00000181090	chromatin interactions
ENSG00000197070	chromatin interactions
ENSG00000203993	chromatin interactions
ENSG00000148399	chromatin interactions
AKAP11	miRNA target sites
GPM6A	miRNA target sites
PRRG1	miRNA target sites
ACIN1	miRNA target sites

Extended variants
information (count: 9153 )
Associated
traits (count: 20 )

Variant overlapped rSNPs/rCNVs (count:9153 , 50 per page) page: 1 2 3 4 5 6 7 ... 184

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs566504750	chr9:140615947-140615948	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs531991531	chr9:140615952-140615953	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs572822603	chr9:140615955-140615956	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs201575435	chr9:140615956-140615957	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs551710987	chr9:140615971-140615972	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs113281338	chr9:140615974-140615975	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs568636647	chr9:140615985-140615986	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs537513348	chr9:140616000-140616001	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs575333306	chr9:140616002-140616003	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs537520469	chr9:140616027-140616028	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs192171729	chr9:140616098-140616099	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs118140625	chr9:140616112-140616113	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs35069911	chr9:140616130-140616131	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs539799505	chr9:140616131-140616132	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs77282835	chr9:140616146-140616147	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs557568165	chr9:140616150-140616151	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs567738700	chr9:140616151-140616152	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs576720422	chr9:140616175-140616176	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs185482640	chr9:140616179-140616180	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs189957081	chr9:140616186-140616187	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs181557709	chr9:140616191-140616192	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs531508234	chr9:140616192-140616193	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs140890711	chr9:140616277-140616278	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs562174102	chr9:140616319-140616320	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs527690502	chr9:140616338-140616339	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs140474716	chr9:140616358-140616359	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs9314638	chr9:140616378-140616379	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs537001261	chr9:140616383-140616384	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs184671019	chr9:140616405-140616406	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs553398297	chr9:140616406-140616407	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs144608169	chr9:140616409-140616410	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs9410122	chr9:140616410-140616411	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs536012095	chr9:140616426-140616427	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs77456947	chr9:140616431-140616432	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs577765911	chr9:140616432-140616433	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs78340574	chr9:140616433-140616434	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs78954633	chr9:140616443-140616444	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs398069071	chr9:140616444-140616445	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs57662186	chr9:140616445-140616446	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs554377488	chr9:140616519-140616520	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs574145661	chr9:140616536-140616537	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs138503820	chr9:140616547-140616548	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs78092334	chr9:140616555-140616556	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs373069907	chr9:140616594-140616595	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs545802645	chr9:140616661-140616662	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs573436412	chr9:140616662-140616663	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs562770659	chr9:140616670-140616671	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs188230592	chr9:140616762-140616763	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs545439870	chr9:140616763-140616764	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs377430650	chr9:140616802-140616803	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:20)

Disease	PMID	Source
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Cardiac fibroma	18329553	CNVD
Lung cancer	19147751	CNVD
Cervical cancer	17311676	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Gastric cancer	17908304	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Chordoma	18071362	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Sudden cardiac death	19188705	CNVD
Myoepithelioma	18604193	CNVD
Tuberous sclerosis	19566914	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Mantle cell lymphoma	19029149	CNVD
Breast cancer	21509527	CNVD

Chromatin state (count:5385 , 50 per page) page: 1 2 3 4 5 6 7 ... 108

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140573000-140638400	Weak transcription	Small Intestine	intestine
2	chr9:140597600-140618000	Weak transcription	NH-A	brain
3	chr9:140598800-140649800	Weak transcription	Stomach Mucosa	stomach
4	chr9:140600400-140618200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:140603200-140634000	Weak transcription	Fetal Heart	heart
6	chr9:140604000-140634200	Weak transcription	Right Atrium	heart
7	chr9:140607600-140619200	Weak transcription	HSMMtube	muscle
8	chr9:140608200-140617000	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:140609000-140616000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:140609400-140616600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr9:140610200-140618200	Weak transcription	Psoas Muscle	Psoas
12	chr9:140610200-140618200	Weak transcription	NHDF-Ad	bronchial
13	chr9:140610600-140616400	Strong transcription	Brain Inferior Temporal Lobe	brain
14	chr9:140610800-140640000	Weak transcription	HUVEC	blood vessel
15	chr9:140611000-140616200	Strong transcription	Pancreas	Pancrea
16	chr9:140611000-140616400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:140611000-140616400	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr9:140611000-140617400	Strong transcription	A549	lung
19	chr9:140611000-140617600	Strong transcription	Dnd41	blood
20	chr9:140611200-140616000	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:140611200-140616000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr9:140611200-140616200	Strong transcription	Adipose Nuclei	Adipose
23	chr9:140611200-140616200	Strong transcription	Right Ventricle	heart
24	chr9:140611400-140616200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr9:140611800-140618200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:140612200-140618200	Weak transcription	Osteobl	bone
27	chr9:140612400-140616400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr9:140612600-140616000	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr9:140612600-140617000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr9:140612600-140618400	Weak transcription	Colon Smooth Muscle	Colon
31	chr9:140612600-140619000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr9:140612800-140616800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr9:140612800-140616800	Weak transcription	Ovary	ovary
34	chr9:140612800-140618800	Strong transcription	Fetal Intestine Small	intestine
35	chr9:140613000-140616200	Strong transcription	Primary B cells from cord blood	blood
36	chr9:140613000-140616200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr9:140613000-140616400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr9:140613000-140616800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:140613000-140618000	Weak transcription	Brain Substantia Nigra	brain
40	chr9:140613000-140618200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr9:140613000-140618200	Weak transcription	GM12878-XiMat	blood
42	chr9:140613000-140620200	Weak transcription	Fetal Kidney	kidney
43	chr9:140613000-140620400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:140613000-140622600	Weak transcription	HSMM	muscle
45	chr9:140613000-140624200	Weak transcription	Brain Angular Gyrus	brain
46	chr9:140613000-140628400	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr9:140613400-140617200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr9:140613400-140617400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:140613600-140616200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr9:140613800-140616000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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