Variant report

Variant	nsv1041189
Chromosome Location	chr15:34868884-34932389
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1651)
CpG islands
(count:1161)
Chromatin interactive
region (count:45)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1651 , 50 per page) page: 1 2 3 4 5 6 7 ... 34

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:34886706-34886742	K562	blood:	n/a	n/a
2	ARID3A	chr15:34929245-34929276	K562	blood:	n/a	n/a
3	ARID3A	chr15:34916436-34916602	K562	blood:	n/a	n/a
4	ARID3A	chr15:34875226-34875237	K562	blood:	n/a	n/a
5	ARID3A	chr15:34880209-34880840	HepG2	liver:	n/a	n/a
6	ARID3A	chr15:34905532-34905838	K562	blood:	n/a	n/a
7	ARID3A	chr15:34880295-34880915	K562	blood:	n/a	n/a
8	ARID3A	chr15:34915270-34915290	K562	blood:	n/a	n/a
9	ARID3A	chr15:34902659-34902943	K562	blood:	n/a	n/a
10	ARID3A	chr15:34913827-34914853	K562	blood:	n/a	chr15:34914367-34914383 chr15:34914368-34914384
11	ARID3A	chr15:34908827-34909205	K562	blood:	n/a	n/a
12	ARID3A	chr15:34869965-34870045	HepG2	liver:	n/a	n/a
13	ATF1	chr15:34896856-34896884	K562	blood:	n/a	n/a
14	ATF1	chr15:34870112-34870339	K562	blood:	n/a	n/a
15	ATF1	chr15:34908847-34909148	K562	blood:	n/a	n/a
16	ATF1	chr15:34880295-34880819	K562	blood:	n/a	n/a
17	ATF1	chr15:34905714-34905797	K562	blood:	n/a	n/a
18	ATF1	chr15:34913992-34914213	K562	blood:	n/a	n/a
19	ATF2	chr15:34880257-34880906	GM12878	blood:	n/a	n/a
20	ATF2	chr15:34880485-34880875	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr15:34880089-34880894	GM12878	blood:	n/a	n/a
22	ATF3	chr15:34908811-34909131	K562	blood:	n/a	n/a
23	BACH1	chr15:34876822-34876846	K562	blood:	n/a	n/a
24	BCL11A	chr15:34875680-34875925	GM12878	blood:	n/a	chr15:34875720-34875733 chr15:34875761-34875774
25	BCLAF1	chr15:34875682-34876567	GM12878	blood:	n/a	chr15:34876318-34876331 chr15:34876075-34876088 chr15:34876322-34876335 chr15:34875720-34875733 chr15:34875761-34875774
26	BCLAF1	chr15:34874945-34875255	GM12878	blood:	n/a	n/a
27	BHLHE40	chr15:34869080-34869387	K562	blood:	n/a	n/a
28	BHLHE40	chr15:34905607-34905881	K562	blood:	n/a	n/a
29	BHLHE40	chr15:34880261-34880517	GM12878	blood:	n/a	n/a
30	BHLHE40	chr15:34875706-34876104	K562	blood:	n/a	chr15:34875930-34875946 chr15:34875736-34875752 chr15:34876078-34876094
31	BHLHE40	chr15:34880263-34880926	K562	blood:	n/a	n/a
32	BHLHE40	chr15:34895468-34895778	HepG2	liver:	n/a	n/a
33	BHLHE40	chr15:34875613-34876036	GM12878	blood:	n/a	chr15:34875930-34875946 chr15:34875736-34875752
34	BHLHE40	chr15:34875060-34875257	GM12878	blood:	n/a	n/a
35	BHLHE40	chr15:34875059-34875165	K562	blood:	n/a	n/a
36	BRCA1	chr15:34880527-34880886	GM12878	blood:	n/a	n/a
37	BRCA1	chr15:34876112-34876385	GM12878	blood:	n/a	n/a
38	BRCA1	chr15:34880497-34880922	HepG2	liver:	n/a	n/a
39	BRCA1	chr15:34880268-34880919	H1-hESC	embryonic stem cell:	n/a	n/a
40	BRCA1	chr15:34880215-34880898	Hela-S3	cervix:	n/a	n/a
41	BRCA1	chr15:34875718-34875874	Hela-S3	cervix:	n/a	n/a
42	BRCA1	chr15:34875754-34875973	HepG2	liver:	n/a	n/a
43	CBX3	chr15:34880177-34880935	K562	blood:	n/a	n/a
44	CBX3	chr15:34875669-34876082	K562	blood:	n/a	n/a
45	CBX3	chr15:34925387-34926073	K562	blood:	n/a	n/a
46	CCNT2	chr15:34875270-34876495	K562	blood:	n/a	n/a
47	CEBPB	chr15:34875806-34876106	Hela-S3	cervix:	n/a	n/a
48	CEBPB	chr15:34873714-34873772	K562	blood:	n/a	chr15:34873725-34873738 chr15:34873727-34873738 chr15:34873725-34873736
49	CEBPB	chr15:34905705-34906062	K562	blood:	n/a	chr15:34905960-34905977
50	CEBPB	chr15:34892326-34892551	A549	lung:	n/a	chr15:34892539-34892548

(count:1161 , 50 per page) page: 1 2 3 4 5 6 7 ... 24

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:34876283-34876333	LNCaP	prostate:	n/a
2	chr15:34875930-34875980	SAEC	small airway:	n/a
3	chr15:34876283-34876333	LNCaP	prostate:	n/a
4	chr15:34875930-34875980	SAEC	small airway:	n/a
5	chr15:34877407-34877457	AoSMC	blood vessel:	n/a
6	chr15:34875138-34875188	CMK	blood:	n/a
7	chr15:34875117-34875167	HCM	heart:	n/a
8	chr15:34876347-34876397	Jurkat	blood:	n/a
9	chr15:34876283-34876333	CMK	blood:	n/a
10	chr15:34875138-34875188	ECC-1	luminal epithelium:	n/a
11	chr15:34874862-34874912	HEEpiC	esophagus:	n/a
12	chr15:34876295-34876345	NHDF-neo	bronchial:	n/a
13	chr15:34876295-34876345	MCF10A-Er-Src	breast:	n/a
14	chr15:34875325-34875375	BJ	skin:	n/a
15	chr15:34875138-34875188	SK-N-MC	brain:	n/a
16	chr15:34875117-34875167	NH-A	brain:	n/a
17	chr15:34876283-34876333	Jurkat	blood:	n/a
18	chr15:34875930-34875980	HNPCEpiC	eye:	n/a
19	chr15:34875250-34875300	ECC-1	luminal epithelium:	n/a
20	chr15:34876295-34876345	HPAEpiC	pulmonary alveolar:	n/a
21	chr15:34875250-34875300	GM12891	blood:	n/a
22	chr15:34876347-34876397	AoSMC	blood vessel:	n/a
23	chr15:34875930-34875980	AG10803	skin:	n/a
24	chr15:34875891-34875941	PFSK-1	brain:	n/a
25	chr15:34880284-34880334	PFSK-1	brain:	n/a
26	chr15:34876283-34876333	A549	lung:	n/a
27	chr15:34880284-34880334	NHDF-neo	bronchial:	n/a
28	chr15:34876347-34876397	AG04450	lung:	fetal
29	chr15:34874862-34874912	NB4	blood:	n/a
30	chr15:34874183-34874233	HAEpiC	amniotic membrane:	n/a
31	chr15:34875930-34875980	HEK293	kidney:	embryo
32	chr15:34875825-34875875	K562	blood:	n/a
33	chr15:34875117-34875167	NHDF-neo	bronchial:	n/a
34	chr15:34880284-34880334	PANC-1	pancreas:	n/a
35	chr15:34875825-34875875	MCF10A-Er-Src	breast:	n/a
36	chr15:34875138-34875188	IMR90	lung:	fetal
37	chr15:34872733-34872783	GM12891	blood:	n/a
38	chr15:34872733-34872783	NHDF-neo	bronchial:	n/a
39	chr15:34872733-34872783	Caco-2	colon:	n/a
40	chr15:34875138-34875188	T-47D	breast:	n/a
41	chr15:34875138-34875188	MCF10A-Er-Src	breast:	n/a
42	chr15:34876283-34876333	PrEC	prostate:	n/a
43	chr15:34872733-34872783	HMEC	breast:	n/a
44	chr15:34874862-34874912	HMEC	breast:	n/a
45	chr15:34875825-34875875	NHDF-neo	bronchial:	n/a
46	chr15:34875937-34875987	HUVEC	blood vessel:	n/a
47	chr15:34876295-34876345	U87	brain:	n/a
48	chr15:34872733-34872783	PrEC	prostate:	n/a
49	chr15:34875117-34875167	HIPEpiC	eye:	n/a
50	chr15:34876396-34876446	AoSMC	blood vessel:	n/a

(count:45 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:34913694..34916752-chr15:34919011..34920724,3	K562	blood:
2	chr15:34913751..34914597-chr15:35212096..35212867,7	K562	blood:
3	chr15:34727095..34731466-chr15:34878887..34881950,4	K562	blood:
4	chr15:34908586..34909269-chr15:35212549..35213068,2	MCF-7	breast:
5	chr15:34892499..34894333-chr15:34896967..34899231,2	K562	blood:
6	chr15:34913694..34916752-chr15:34919011..34920724,3	K562	blood:
7	chr15:34659441..34662117-chr15:34875107..34877933,3	K562	blood:
8	chr15:34892499..34894333-chr15:34896967..34899231,2	K562	blood:
9	chr15:34664329..34667047-chr15:34894143..34895743,2	MCF-7	breast:
10	chr15:34330686..34332519-chr15:34889794..34891923,2	MCF-7	breast:
11	chr15:34632776..34635331-chr15:34879472..34881728,2	K562	blood:
12	chr15:34931128..34933994-chr15:34934903..34936649,2	K562	blood:
13	chr15:34869058..34871895-chr15:34873883..34875893,3	K562	blood:
14	chr15:34898803..34900649-chr15:34905656..34908079,2	K562	blood:
15	chr15:34908560..34909558-chr15:35212164..35213076,4	K562	blood:
16	chr13:92448522..92450690-chr15:34895323..34897374,2	K562	blood:
17	chr15:34658082..34661057-chr15:34874863..34877414,3	MCF-7	breast:
18	chr15:34875762..34878300-chr15:34879087..34881803,6	K562	blood:
19	chr15:34927785..34933151-chr15:34934497..34941490,8	K562	blood:
20	chr15:34867657..34871070-chr15:34876144..34878325,3	K562	blood:
21	chr15:34913307..34914991-chr15:34929235..34931577,2	K562	blood:
22	chr15:34659566..34660339-chr15:34879136..34879733,2	MCF-7	breast:
23	chr15:34868472..34871070-chr15:34876144..34878325,2	K562	blood:
24	chr15:34913307..34914991-chr15:34929235..34931577,2	K562	blood:
25	chr15:34879223..34881623-chr15:34893177..34895546,2	K562	blood:
26	chr15:34513565..34517614-chr15:34877827..34881077,3	K562	blood:
27	chr15:34870217..34872096-chr15:35279333..35281998,2	K562	blood:
28	chr15:34913918..34914531-chr15:35212584..35213285,2	MCF-7	breast:
29	chr15:34867657..34871070-chr15:34876144..34878325,3	K562	blood:
30	chr15:34873722..34878608-chr15:34878671..34882990,11	K562	blood:
31	chr15:34912716..34916752-chr15:34917196..34920581,4	K562	blood:
32	chr15:34518743..34520763-chr15:34876016..34878611,2	MCF-7	breast:
33	chr15:34873722..34878608-chr15:34878671..34882990,11	K562	blood:
34	chr15:34875762..34878300-chr15:34879087..34881803,6	K562	blood:
35	chr15:34876102..34877627-chr15:34879229..34881136,2	MCF-7	breast:
36	chr15:34351759..34355755-chr15:34876768..34880095,3	K562	blood:
37	chr15:34912716..34916752-chr15:34917196..34920581,4	K562	blood:
38	chr15:34898803..34900649-chr15:34905656..34908079,2	K562	blood:
39	chr15:34727885..34731466-chr15:34878887..34881950,4	K562	blood:
40	chr15:34726561..34729987-chr15:34871215..34874723,3	K562	blood:
41	chr15:34330963..34332496-chr15:34876229..34877827,2	K562	blood:
42	chr15:34875152..34877762-chr15:34886558..34889393,2	MCF-7	breast:
43	chr15:34907702..34910411-chr15:34952455..34954523,2	K562	blood:
44	chr15:34868472..34871070-chr15:34876144..34878325,2	K562	blood:
45	chr15:34628679..34631455-chr15:34874185..34875808,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GJD2-3	chr15:34874951-34875061	NONHSAT041597
2	lnc-GJD2-4	chr15:34873667-34873700	NONHSAT140232
3	lnc-GJD2-4	chr15:34875717-34875835	NONHSAT041596

No data

Variant related genes	Relation type
GOLGA8A	TF binding region
ENSG00000252425	TF binding region
GOLGA8B	TF binding region
GOLGA8A	CpG island
ENSG00000252425	CpG island
GOLGA8B	CpG island
ENSG00000215252	chromatin interactions
ENSG00000176454	chromatin interactions
ENSG00000140199	chromatin interactions
ENSG00000259904	chromatin interactions
ENSG00000175265	chromatin interactions
ENSG00000182117	chromatin interactions
ENSG00000266205	chromatin interactions
ENSG00000128463	chromatin interactions
ENSG00000198146	chromatin interactions
ENSG00000169857	chromatin interactions

Extended variants
information (count: 2080 )
Associated
traits (count: 69 )

Variant overlapped rSNPs/rCNVs (count:2080 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs184252302	chr15:34868909-34868910	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs76241201	chr15:34868935-34868936	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs74007868	chr15:34868955-34868956	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs548359687	chr15:34868957-34868958	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs74007869	chr15:34868980-34868981	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs77046139	chr15:34868989-34868990	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs371536270	chr15:34868990-34868991	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs566839858	chr15:34868998-34868999	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs145981695	chr15:34869003-34869004	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs552547347	chr15:34869013-34869014	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs570719056	chr15:34869015-34869016	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs554701969	chr15:34869018-34869019	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs183659315	chr15:34869061-34869062	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs377059245	chr15:34869075-34869076	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs7173628	chr15:34869110-34869111	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs556430797	chr15:34869132-34869133	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs7174350	chr15:34869161-34869162	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs377291224	chr15:34869195-34869196	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs376053482	chr15:34869196-34869197	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs370138379	chr15:34869212-34869213	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs368321824	chr15:34869233-34869234	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs7173836	chr15:34869268-34869269	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
23	rs112679922	chr15:34869274-34869275	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs562953123	chr15:34869310-34869311	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs540108828	chr15:34869356-34869357	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs200222802	chr15:34869363-34869364	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs558532752	chr15:34869382-34869383	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs62004904	chr15:34869400-34869401	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs200273562	chr15:34869402-34869403	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs111627316	chr15:34869424-34869425	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs113699520	chr15:34869432-34869433	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs576803071	chr15:34869435-34869436	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs113189999	chr15:34869441-34869442	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs544191472	chr15:34869449-34869450	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs62004905	chr15:34869453-34869454	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs149674727	chr15:34869475-34869476	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs551794246	chr15:34869488-34869489	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs62004906	chr15:34869534-34869535	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs78338493	chr15:34869606-34869607	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs201500596	chr15:34869632-34869633	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs566704273	chr15:34869663-34869664	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs527990104	chr15:34869704-34869705	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs190962198	chr15:34869708-34869709	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs558590492	chr15:34869709-34869710	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs543547803	chr15:34869713-34869714	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs71119972	chr15:34869756-34869757	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs8039675	chr15:34869761-34869762	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs201081441	chr15:34869846-34869847	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs571123748	chr15:34869857-34869858	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs201885758	chr15:34869936-34869937	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:69)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prader-willi syndrome	21504564	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
lymphocytic leukemia	21291569	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:1050 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34848400-34874600	Weak transcription	Esophagus	oesophagus
2	chr15:34854600-34873600	Weak transcription	GM12878-XiMat	blood
3	chr15:34856400-34872600	Weak transcription	Gastric	stomach
4	chr15:34856600-34873200	Weak transcription	Ovary	ovary
5	chr15:34857000-34873000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:34857200-34872400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:34857400-34873000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr15:34859000-34872600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:34860400-34869800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:34861800-34873000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:34862400-34870400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:34862400-34874000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr15:34862400-34874600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:34862600-34870600	Weak transcription	Right Ventricle	heart
15	chr15:34862600-34873000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:34862600-34873800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:34862600-34874000	Weak transcription	Spleen	Spleen
18	chr15:34864800-34873000	Weak transcription	Brain Angular Gyrus	brain
19	chr15:34866600-34869600	Weak transcription	HepG2	liver
20	chr15:34866600-34873000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr15:34867000-34870400	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr15:34867000-34872800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:34867200-34874000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:34867400-34870400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:34867400-34874400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:34867800-34872800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:34868000-34869400	Enhancers	HSMMtube	muscle
28	chr15:34868200-34870400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:34868400-34869400	Enhancers	Pancreas	Pancrea
30	chr15:34868600-34869400	Enhancers	Fetal Muscle Leg	muscle
31	chr15:34868800-34869000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr15:34868800-34869000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr15:34868800-34869000	Enhancers	Right Atrium	heart
34	chr15:34868800-34869000	Enhancers	A549	lung
35	chr15:34868800-34869200	Enhancers	Aorta	Aorta
36	chr15:34868800-34869200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr15:34868800-34869200	Enhancers	NHDF-Ad	bronchial
38	chr15:34868800-34869400	Enhancers	Fetal Brain Male	brain
39	chr15:34868800-34869400	Enhancers	Left Ventricle	heart
40	chr15:34868800-34869800	Enhancers	Fetal Heart	heart
41	chr15:34868800-34870600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:34868800-34871000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:34869000-34869200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:34869000-34869400	Enhancers	HSMM	muscle
45	chr15:34869000-34869800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:34869000-34869800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr15:34869000-34869800	Weak transcription	A549	lung
48	chr15:34869000-34870600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr15:34869000-34870800	Enhancers	K562	blood
50	chr15:34869000-34871800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links