Variant report

Variant	nsv1041524
Chromosome Location	chr15:92135348-92181419
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:92129923..92132769-chr15:92148442..92150498,2	K562	blood:
2	chr15:92164034..92165548-chr15:92170234..92172069,2	K562	blood:
3	chr15:92164034..92165548-chr15:92170234..92172069,2	K562	blood:
4	chr15:92144164..92146565-chr15:92147184..92148972,2	K562	blood:
5	chr15:92143033..92145481-chr15:92154403..92157089,2	K562	blood:
6	chr15:92180539..92182084-chr15:92182333..92184599,2	K562	blood:
7	chr15:92144164..92146565-chr15:92147184..92148972,2	K562	blood:
8	chr15:92162736..92166169-chr15:92167377..92170941,3	MCF-7	breast:
9	chr15:92168046..92170940-chr15:92173867..92175722,4	MCF-7	breast:
10	chr15:92170639..92173345-chr15:92176759..92179655,2	K562	blood:
11	chr15:92168046..92170940-chr15:92173867..92175722,4	MCF-7	breast:
12	chr15:92170639..92173345-chr15:92176759..92179655,2	K562	blood:
13	chr15:92143033..92145481-chr15:92154403..92157089,2	K562	blood:
14	chr15:92173790..92175692-chr15:92177166..92179975,2	MCF-7	breast:
15	chr15:92173790..92175692-chr15:92177166..92179975,2	MCF-7	breast:
16	chr15:92162736..92166169-chr15:92167377..92170941,3	MCF-7	breast:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLCO3A1-1	chr15:92179138-92179214	XLOC_011354
2	lnc-SLCO3A1-1	chr15:92155314-92155342	XLOC_011354
3	lnc-SLCO3A1-1	chr15:92180029-92180308	XLOC_011354
4	lnc-SV2B-1	chr15:92148107-92148441	ENSG00000258551
5	lnc-SLCO3A1-1	chr15:92178894-92179214	XLOC_011354
6	lnc-SLCO3A1-1	chr15:92180029-92180308	XLOC_011354

No data

Variant related genes	Relation type
ERLIN1	miRNA target sites

Extended variants
information (count: 1310 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:1310 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs116723655	chr15:92135849-92135850	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs531159933	chr15:92135896-92135897	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs181404459	chr15:92135900-92135901	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs557303748	chr15:92136000-92136001	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs143256000	chr15:92136001-92136002	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs113043375	chr15:92136010-92136011	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs370533907	chr15:92136022-92136023	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs151265302	chr15:92136023-92136024	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs548573790	chr15:92136041-92136042	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs565386735	chr15:92136045-92136046	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs185961604	chr15:92136066-92136067	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs557870162	chr15:92136102-92136103	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs140457555	chr15:92136104-92136105	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs537274584	chr15:92136120-92136121	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs556943297	chr15:92136169-92136170	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs190724513	chr15:92136174-92136175	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs542988733	chr15:92136208-92136209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs559774665	chr15:92136218-92136219	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs573308242	chr15:92136225-92136226	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs181693109	chr15:92136266-92136267	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs565397518	chr15:92136292-92136293	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs530976029	chr15:92136374-92136375	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs78948478	chr15:92136396-92136397	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs139809781	chr15:92136410-92136411	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs541287995	chr15:92136444-92136445	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs561200845	chr15:92136518-92136519	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs186383808	chr15:92136520-92136521	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs546933356	chr15:92136628-92136629	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs6496839	chr15:92136683-92136684	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs534643264	chr15:92136719-92136720	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs551161597	chr15:92136769-92136770	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs6496840	chr15:92136802-92136803	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs536806446	chr15:92136816-92136817	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs557189605	chr15:92136818-92136819	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs573921771	chr15:92136819-92136820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs192465183	chr15:92136822-92136823	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs138200849	chr15:92136834-92136835	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs550949915	chr15:92136919-92136920	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs182557747	chr15:92136962-92136963	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs558739556	chr15:92136974-92136975	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs186096690	chr15:92136976-92136977	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs4404050	chr15:92136977-92136978	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs561139393	chr15:92137019-92137020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs77520939	chr15:92137067-92137068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs191007314	chr15:92137099-92137100	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs74028277	chr15:92137112-92137113	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs528041526	chr15:92137193-92137194	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs115958378	chr15:92137202-92137203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs182573521	chr15:92137205-92137206	Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs79612651	chr15:92137212-92137213	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
small cell lung cancer	20016488	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Myofibroblastic sarcoma	19369631	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Sudden cardiac death	19188705	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Epilepsy	19486360	CNVD
Acute myeloid leukemia	17237825	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Ovarian cancer	21720365	CNVD
Developmental delay	21147756	CNVD
Hepatocellular carcinoma	16750200	CNVD
Central neurocytomas	17123091	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	21364760	CNVD
Schizophrenia	17989066	CNVD
Myelofibrosis	22110671	CNVD
Burkitt''s lymphoma	19759907	CNVD

Chromatin state (count:175 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92135800-92137000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:92135800-92137200	Enhancers	NHDF-Ad	bronchial
3	chr15:92135800-92137400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:92136600-92137200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr15:92140000-92140400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:92142400-92142600	Bivalent Enhancer	Lung	lung
7	chr15:92145600-92147800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:92146200-92146600	Enhancers	Brain Cingulate Gyrus	brain
9	chr15:92146400-92147200	Enhancers	Brain Hippocampus Middle	brain
10	chr15:92146800-92147000	Enhancers	Brain Substantia Nigra	brain
11	chr15:92147000-92147200	ZNF genes & repeats	Aorta	Aorta
12	chr15:92147000-92147200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr15:92147200-92148200	Weak transcription	Brain Hippocampus Middle	brain
14	chr15:92147200-92148400	Weak transcription	Aorta	Aorta
15	chr15:92147600-92148600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:92147800-92149200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:92148400-92148800	Enhancers	Aorta	Aorta
18	chr15:92148600-92148800	Enhancers	Brain Hippocampus Middle	brain
19	chr15:92148600-92149000	Enhancers	Brain Substantia Nigra	brain
20	chr15:92148600-92149400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr15:92152600-92153400	Enhancers	Fetal Brain Male	brain
22	chr15:92152800-92153000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:92152800-92153200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
24	chr15:92152800-92153400	Enhancers	Adipose Nuclei	Adipose
25	chr15:92153000-92153600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:92154800-92156000	Enhancers	HepG2	liver
27	chr15:92155400-92156000	Enhancers	Liver	Liver
28	chr15:92157400-92158800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:92157800-92158000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:92157800-92158400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr15:92158000-92170000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:92158800-92162800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:92162200-92162800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr15:92162800-92163800	Enhancers	Colon Smooth Muscle	Colon
35	chr15:92162800-92164600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr15:92163000-92164000	Enhancers	Rectal Smooth Muscle	rectum
37	chr15:92163000-92164400	Enhancers	Fetal Stomach	stomach
38	chr15:92163400-92163600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:92163400-92163600	Enhancers	Fetal Brain Male	brain
40	chr15:92163600-92163800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:92163600-92163800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:92163600-92163800	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr15:92163600-92163800	Enhancers	Fetal Brain Female	brain
44	chr15:92163600-92163800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
45	chr15:92163600-92164000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:92163600-92164400	Enhancers	Fetal Lung	lung
47	chr15:92163600-92165000	Weak transcription	Fetal Brain Male	brain
48	chr15:92163800-92164600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr15:92163800-92164600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr15:92163800-92166000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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