Variant report

Variant	nsv1041635
Chromosome Location	chr15:55658171-55943942
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3840)
CpG islands
(count:3850)
Chromatin interactive
region (count:144)
LncRNA
region (count:5)
Mature miRNA
region (count: 2)
miRNA target
sites (count:4)

(count:3840 , 50 per page) page: 1 2 3 4 5 6 7 ... 77

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:55818712-55819023	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:55688544-55689215	K562	blood:	n/a	n/a
3	ARID3A	chr15:55695766-55696116	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:55699681-55700995	HepG2	liver:	n/a	chr15:55699936-55699952
5	ARID3A	chr15:55694987-55696143	K562	blood:	n/a	n/a
6	ARID3A	chr15:55711482-55711586	HepG2	liver:	n/a	n/a
7	ARID3A	chr15:55933805-55934122	K562	blood:	n/a	n/a
8	ARID3A	chr15:55933818-55934139	HepG2	liver:	n/a	n/a
9	ARID3A	chr15:55700139-55701084	K562	blood:	n/a	n/a
10	ARID3A	chr15:55693945-55694278	K562	blood:	n/a	n/a
11	ARID3A	chr15:55662471-55662715	HepG2	liver:	n/a	n/a
12	ARID3A	chr15:55790421-55790685	HepG2	liver:	n/a	n/a
13	ARID3A	chr15:55772283-55772392	HepG2	liver:	n/a	n/a
14	ARID3A	chr15:55806152-55806285	K562	blood:	n/a	n/a
15	ATF1	chr15:55939036-55939172	K562	blood:	n/a	n/a
16	ATF1	chr15:55695695-55696130	K562	blood:	n/a	n/a
17	ATF1	chr15:55731955-55732174	K562	blood:	n/a	n/a
18	ATF1	chr15:55700302-55701186	K562	blood:	n/a	n/a
19	ATF2	chr15:55700234-55700505	GM12878	blood:	n/a	n/a
20	ATF2	chr15:55700143-55700984	GM12878	blood:	n/a	n/a
21	ATF2	chr15:55700338-55700728	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF3	chr15:55818765-55819007	K562	blood:	n/a	n/a
23	ATF3	chr15:55700118-55701112	A549	lung:	n/a	n/a
24	ATF3	chr15:55700358-55700740	K562	blood:	n/a	n/a
25	ATF3	chr15:55697469-55697665	K562	blood:	n/a	n/a
26	ATF3	chr15:55818618-55819080	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF3	chr15:55695638-55696206	K562	blood:	n/a	n/a
28	BACH1	chr15:55879929-55880216	H1-hESC	embryonic stem cell:	n/a	n/a
29	BACH1	chr15:55928620-55928792	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr15:55845070-55845357	H1-hESC	embryonic stem cell:	n/a	n/a
31	BACH1	chr15:55693951-55694258	K562	blood:	n/a	n/a
32	BACH1	chr15:55790323-55790739	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr15:55695752-55696274	K562	blood:	n/a	n/a
34	BACH1	chr15:55659431-55659478	K562	blood:	n/a	n/a
35	BACH1	chr15:55700619-55701045	H1-hESC	embryonic stem cell:	n/a	n/a
36	BACH1	chr15:55700665-55700854	K562	blood:	n/a	n/a
37	BACH1	chr15:55880445-55881363	H1-hESC	embryonic stem cell:	n/a	n/a
38	BATF	chr15:55834632-55834829	GM12878	blood:	n/a	n/a
39	BATF	chr15:55834598-55834831	GM12878	blood:	n/a	n/a
40	BCL3	chr15:55700313-55701096	A549	lung:	n/a	chr15:55700652-55700665 chr15:55700787-55700795 chr15:55700649-55700662
41	BCL3	chr15:55790292-55790938	A549	lung:	n/a	n/a
42	BCL3	chr15:55790199-55790921	A549	lung:	n/a	n/a
43	BCLAF1	chr15:55700112-55700929	GM12878	blood:	n/a	chr15:55700652-55700665 chr15:55700787-55700795 chr15:55700649-55700662
44	BCLAF1	chr15:55700180-55700876	GM12878	blood:	n/a	chr15:55700652-55700665 chr15:55700787-55700795 chr15:55700649-55700662
45	BHLHE40	chr15:55689050-55689682	K562	blood:	n/a	n/a
46	BHLHE40	chr15:55790520-55790743	K562	blood:	n/a	n/a
47	BHLHE40	chr15:55791493-55791621	A549	lung:	n/a	n/a
48	BHLHE40	chr15:55694074-55694195	K562	blood:	n/a	n/a
49	BHLHE40	chr15:55830506-55830748	K562	blood:	n/a	n/a
50	BHLHE40	chr15:55690413-55690747	K562	blood:	n/a	chr15:55690612-55690625

(count:3850 , 50 per page) page: 1 2 3 4 5 6 7 ... 77

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:55881089-55881139	GM12878	blood:	n/a
2	chr15:55799927-55799977	GM19239	blood:	n/a
3	chr15:55880224-55880274	LNCaP	prostate:	n/a
4	chr15:55881081-55881131	Jurkat	blood:	n/a
5	chr15:55805949-55805999	HMEC	breast:	n/a
6	chr15:55700780-55700830	HRPEpiC	eye:	n/a
7	chr15:55909920-55909970	AoSMC	blood vessel:	n/a
8	chr15:55881089-55881139	GM12878	blood:	n/a
9	chr15:55799927-55799977	GM19239	blood:	n/a
10	chr15:55880224-55880274	LNCaP	prostate:	n/a
11	chr15:55881081-55881131	Jurkat	blood:	n/a
12	chr15:55805949-55805999	HMEC	breast:	n/a
13	chr15:55700780-55700830	HRPEpiC	eye:	n/a
14	chr15:55909920-55909970	AoSMC	blood vessel:	n/a
15	chr15:55805566-55805616	HEK293	kidney:	embryo
16	chr15:55700689-55700739	HIPEpiC	eye:	n/a
17	chr15:55697065-55697115	A549	lung:	n/a
18	chr15:55790675-55790725	NH-A	brain:	n/a
19	chr15:55710020-55710070	HMEC	breast:	n/a
20	chr15:55700482-55700532	BJ	skin:	n/a
21	chr15:55700768-55700818	NH-A	brain:	n/a
22	chr15:55700780-55700830	NT2-D1	testis:	n/a
23	chr15:55791821-55791871	AG10803	skin:	n/a
24	chr15:55700593-55700643	Jurkat	blood:	n/a
25	chr15:55876513-55876563	RPTEC	kidney:	n/a
26	chr15:55881044-55881094	HNPCEpiC	eye:	n/a
27	chr15:55788146-55788196	NHBE	bronchial:	n/a
28	chr15:55788778-55788828	GM12878	blood:	n/a
29	chr15:55793864-55793914	CMK	blood:	n/a
30	chr15:55793864-55793914	HAEpiC	amniotic membrane:	n/a
31	chr15:55710020-55710070	HCT-116	colon:	n/a
32	chr15:55881089-55881139	AG09309	skin:	n/a
33	chr15:55881607-55881657	HRE	kidney:	n/a
34	chr15:55665236-55665286	HCPEpiC	choroid plexus:	n/a
35	chr15:55881599-55881649	NT2-D1	testis:	n/a
36	chr15:55700768-55700818	ovcar-3	ovarian:	n/a
37	chr15:55880089-55880139	HCT-116	colon:	n/a
38	chr15:55881607-55881657	Hela-S3	cervix:	n/a
39	chr15:55700901-55700951	AG09309	skin:	n/a
40	chr15:55697065-55697115	BJ	skin:	n/a
41	chr15:55920336-55920386	ovcar-3	ovarian:	n/a
42	chr15:55881706-55881756	H1-hESC	embryonic stem cell:	embryo
43	chr15:55881083-55881133	NH-A	brain:	n/a
44	chr15:55881599-55881649	AG09309	skin:	n/a
45	chr15:55700471-55700521	SKMC	muscle:	n/a
46	chr15:55800831-55800881	Hepatocyte	liver:	n/a
47	chr15:55881089-55881139	K562	blood:	n/a
48	chr15:55790571-55790621	GM12892	blood:	n/a
49	chr15:55700587-55700637	PANC-1	pancreas:	n/a
50	chr15:55790675-55790725	AoSMC	blood vessel:	n/a

(count:144 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr15:55609877..55611698-chr15:55698360..55701817,3	MCF-7	breast:
2	chr15:55689930..55691529-chr15:55699148..55701673,2	MCF-7	breast:
3	chr15:55610040..55612568-chr15:55696345..55698141,2	MCF-7	breast:
4	chr15:55940663..55943471-chr15:56092171..56094031,2	MCF-7	breast:
5	chr15:55623887..55626442-chr15:55671919..55674129,2	K562	blood:
6	chr15:55581601..55584571-chr15:55728734..55731543,2	K562	blood:
7	chr15:55687261..55690621-chr15:55699123..55703142,5	K562	blood:
8	chr15:55936558..55939197-chr15:55940435..55942868,2	K562	blood:
9	chr15:55509498..55510422-chr15:55731553..55732482,2	K562	blood:
10	chr15:55580034..55582038-chr15:55661927..55663730,2	MCF-7	breast:
11	chr15:55708123..55710711-chr15:55711539..55714446,2	K562	blood:
12	chr15:55881922..55884171-chr15:55889698..55891738,2	MCF-7	breast:
13	chr15:55694340..55696767-chr15:55697475..55699670,2	MCF-7	breast:
14	chr15:55687039..55689361-chr15:55690418..55692819,3	K562	blood:
15	chr15:55579894..55582757-chr15:55689915..55691723,2	K562	blood:
16	chr15:55805811..55806979-chr15:55933287..55934076,3	MCF-7	breast:
17	chr15:55701169..55703678-chr15:55710788..55712535,2	MCF-7	breast:
18	chr15:55772415..55774167-chr15:55776745..55778293,2	K562	blood:
19	chr15:55607682..55613892-chr15:55697623..55703247,7	K562	blood:
20	chr15:55580643..55583951-chr15:55698978..55701737,3	K562	blood:
21	chr15:55609486..55611262-chr15:55788891..55791859,2	K562	blood:
22	chr15:55940700..55941248-chr15:56066693..56067247,2	K562	blood:
23	chr15:55805811..55806979-chr15:55933287..55934076,3	MCF-7	breast:
24	chr15:55939872..55941462-chr15:56091567..56092720,22	MCF-7	breast:
25	chr15:55824404..55826095-chr15:55826140..55828917,2	MCF-7	breast:
26	chr15:55883057..55885879-chr15:55889260..55891781,2	K562	blood:
27	chr15:55577567..55579089-chr15:55694528..55696394,2	K562	blood:
28	chr1:222884982..222885886-chr15:55790504..55791243,2	Hela-S3	cervix:
29	chr15:55789676..55792813-chr15:55797068..55799898,3	MCF-7	breast:
30	chr15:55656332..55658633-chr15:55699668..55701557,2	MCF-7	breast:
31	chr15:55869964..55873687-chr15:55878081..55881515,3	MCF-7	breast:
32	chr15:55940297..55941155-chr15:56138005..56138994,3	K562	blood:
33	chr15:55772415..55774167-chr15:55776745..55778293,2	K562	blood:
34	chr15:55700022..55700552-chr9:133454540..133455085,2	Hela-S3	cervix:
35	chr15:55693271..55696849-chr15:55698845..55702459,5	MCF-7	breast:
36	chr15:55656332..55658633-chr15:55699668..55701557,2	MCF-7	breast:
37	chr15:55613382..55615549-chr15:55714258..55716081,2	K562	blood:
38	chr15:55678437..55680637-chr15:55698819..55700727,3	K562	blood:
39	chr15:55940223..55941251-chr15:56138147..56138992,3	MCF-7	breast:
40	chr15:55696852..55699665-chr15:55712534..55714960,2	K562	blood:
41	chr15:55509736..55510399-chr15:55727358..55727891,2	MCF-7	breast:
42	chr15:55610804..55613715-chr15:55685567..55687779,2	K562	blood:
43	chr15:55700578..55702237-chr15:55707126..55709409,2	MCF-7	breast:
44	chr15:55610027..55612992-chr15:55688713..55692198,3	K562	blood:
45	chr15:55874660..55876672-chr15:55879383..55881839,2	MCF-7	breast:
46	chr15:55696852..55699665-chr15:55712534..55714960,2	K562	blood:
47	chr15:55486571..55489386-chr15:55698193..55701285,4	K562	blood:
48	chr15:55664031..55666470-chr15:55667052..55669566,2	K562	blood:
49	chr14:68162088..68162732-chr15:55699888..55700416,2	Hela-S3	cervix:
50	chr15:55659246..55661833-chr15:55665281..55667485,2	K562	blood:

(count:5 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PYGO1-2	chr15:55904946-55906620	NONHSAT044004
2	lnc-RP11-178D12.1.1-5	chr15:55881501-55882082	NONHSAT044003
3	lnc-PYGO1-2	chr15:55903750-55904914	NONHSAT044004
4	lnc-PYGO1-1	chr15:55831082-55834829	NONHSAT044002
5	lnc-RP11-178D12.1.1-5	chr15:55880889-55881017	NONHSAT044003

miRNA name	Chromosome Location	mirBase accession
hsa-miR-628-3p	chr15:55665152-55665172	MIMAT0003297
hsa-miR-628-5p	chr15:55665189-55665210	MIMAT0004809

(count:4 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	PRTG	hsa-let-7b-5p	chr15:55910219-55910240
2	PRTG	hsa-let-7b-5p	chr15:55911754-55911748
3	PRTG	hsa-let-7b-5p	chr15:55910225-55910219
4	PRTG	hsa-let-7b-5p	chr15:55911797-55911790

Variant related genes	Relation type
MIR628	TF binding region
PYGO1	TF binding region
C15orf65	TF binding region
CCPG1	TF binding region
DYX1C1-CCPG1	TF binding region
DYX1C1	TF binding region
ENSG00000260036	TF binding region
MIR628	CpG island
PYGO1	CpG island
C15orf65	CpG island
CCPG1	CpG island
DYX1C1-CCPG1	CpG island
DYX1C1	CpG island
ENSG00000260036	CpG island
ENSG00000171016	chromatin interactions
ENSG00000225973	chromatin interactions
ENSG00000260916	chromatin interactions
ENSG00000202077	chromatin interactions
ENSG00000133639	chromatin interactions
ENSG00000261652	chromatin interactions
ENSG00000166450	chromatin interactions
ENSG00000069974	chromatin interactions
ENSG00000245904	chromatin interactions
ENSG00000069943	chromatin interactions
ENSG00000261771	chromatin interactions
ENSG00000186063	chromatin interactions
ENSG00000072042	chromatin interactions
ENSG00000270141	chromatin interactions
ENSG00000199568	chromatin interactions
ENSG00000200156	chromatin interactions
ENSG00000160310	chromatin interactions
ENSG00000137876	chromatin interactions
ENSG00000107164	chromatin interactions
ENSG00000083544	chromatin interactions
ENSG00000207964	chromatin interactions
ENSG00000256061	chromatin interactions
ENSG00000198755	chromatin interactions
CDC14A	Mature miRNA region
LRP6	Mature miRNA region
NELFE	Mature miRNA region
TGFBRAP1	Mature miRNA region
AGO1	Mature miRNA region

Extended variants
information (count: 12283 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:12283 , 50 per page) page: 1 2 3 4 5 6 7 ... 246

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs111696613	chr15:55658206-55658207	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
2	rs539846225	chr15:55658213-55658214	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
3	rs558852637	chr15:55658269-55658270	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
4	rs572412969	chr15:55658284-55658285	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
5	rs188398616	chr15:55658292-55658293	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
6	rs565869009	chr15:55658303-55658304	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
7	rs192233310	chr15:55658320-55658321	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
8	rs184664348	chr15:55658401-55658402	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
9	rs151131548	chr15:55658479-55658480	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
10	rs563396587	chr15:55658482-55658483	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
11	rs534876006	chr15:55658502-55658503	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
12	rs148976460	chr15:55658503-55658504	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
13	rs55964720	chr15:55658507-55658508	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
14	rs545432874	chr15:55658508-55658509	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
15	rs61214049	chr15:55658520-55658521	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
16	rs511132	chr15:55658522-55658523	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs548357592	chr15:55658561-55658562	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
18	rs538684575	chr15:55658566-55658567	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
19	rs113732236	chr15:55658570-55658571	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
20	rs190343806	chr15:55658575-55658576	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
21	rs531157917	chr15:55658595-55658596	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
22	rs574743726	chr15:55658606-55658607	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
23	rs17819096	chr15:55658648-55658649	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
24	rs572683022	chr15:55658740-55658741	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs539836509	chr15:55658742-55658743	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs553454611	chr15:55658743-55658744	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs565960086	chr15:55658760-55658761	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs56132182	chr15:55658767-55658768	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs554869155	chr15:55658787-55658788	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs574498525	chr15:55658788-55658789	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs73421633	chr15:55658815-55658816	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs116848164	chr15:55658825-55658826	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
33	rs533783038	chr15:55658847-55658848	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
34	rs192339760	chr15:55658894-55658895	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
35	rs574689476	chr15:55658935-55658936	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
36	rs545369996	chr15:55658951-55658952	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
37	rs558956825	chr15:55658954-55658955	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
38	rs528091952	chr15:55658958-55658959	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
39	rs142102720	chr15:55658965-55658966	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
40	rs115210783	chr15:55659027-55659028	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
41	rs530973704	chr15:55659032-55659033	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
42	rs368639885	chr15:55659043-55659044	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
43	rs34210341	chr15:55659074-55659075	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
44	rs558896952	chr15:55659075-55659076	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
45	rs145917386	chr15:55659130-55659131	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
46	rs184726656	chr15:55659136-55659137	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
47	rs77460119	chr15:55659137-55659138	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
48	rs145577644	chr15:55659144-55659145	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
49	rs540329870	chr15:55659169-55659170	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
50	rs566842331	chr15:55659266-55659267	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Pancreatic cancer	17952125	CNVD
Gastric adenocarcinoma	19115996	CNVD
Congenital diaphragmatic hernia	21341218	CNVD
Holoprosencephaly	21359414	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:3170 , 50 per page) page: 1 2 3 4 5 6 7 ... 64

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55611800-55699400	Weak transcription	Colonic Mucosa	Colon
2	chr15:55612000-55665000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:55612000-55671000	Weak transcription	Right Ventricle	heart
4	chr15:55612000-55671000	Weak transcription	Small Intestine	intestine
5	chr15:55612600-55663600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:55612600-55675600	Weak transcription	Aorta	Aorta
7	chr15:55612800-55677600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:55623800-55660200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:55630000-55695000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:55630400-55675600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:55630600-55660200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:55630600-55663200	Weak transcription	Fetal Lung	lung
13	chr15:55630600-55667800	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:55630600-55668400	Weak transcription	Brain Substantia Nigra	brain
15	chr15:55630800-55683600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:55631000-55667800	Weak transcription	Brain Hippocampus Middle	brain
17	chr15:55631200-55663200	Weak transcription	Pancreas	Pancrea
18	chr15:55631200-55674000	Weak transcription	Placenta	Placenta
19	chr15:55633600-55667200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr15:55635800-55675200	Weak transcription	Fetal Brain Male	brain
21	chr15:55636600-55678200	Weak transcription	Fetal Thymus	thymus
22	chr15:55636800-55666200	Weak transcription	Brain Germinal Matrix	brain
23	chr15:55637000-55660400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr15:55637000-55663000	Weak transcription	K562	blood
25	chr15:55637000-55663400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:55637000-55671400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:55637000-55699600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:55637400-55680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:55638000-55658200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr15:55641000-55667800	Weak transcription	Spleen	Spleen
31	chr15:55641000-55668000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:55641000-55671600	Weak transcription	Thymus	Thymus
33	chr15:55641200-55658200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:55641600-55660200	Weak transcription	Gastric	stomach
35	chr15:55643000-55664000	Weak transcription	GM12878-XiMat	blood
36	chr15:55645000-55665000	Weak transcription	Fetal Intestine Small	intestine
37	chr15:55645000-55667800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:55645000-55680800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:55645600-55681400	Weak transcription	Stomach Mucosa	stomach
40	chr15:55646400-55658400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr15:55646800-55660600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr15:55647800-55695400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr15:55648200-55666200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr15:55648800-55675800	Weak transcription	Dnd41	blood
45	chr15:55649200-55681000	Weak transcription	HSMM	muscle
46	chr15:55649400-55660000	Weak transcription	Fetal Intestine Large	intestine
47	chr15:55649800-55695800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr15:55650000-55662600	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:55650400-55662400	Weak transcription	Osteobl	bone
50	chr15:55650400-55663400	Weak transcription	NH-A	brain

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