Variant report

Variant	nsv1041666
Chromosome Location	chr10:42433540-42525112
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-10	chr10:42489651-42489811	NONHSAT012851
2	lnc-CCNYL2-10	chr10:42498812-42498914	NONHSAT012851
3	lnc-CCNYL2-10	chr10:42501405-42501470	NONHSAT012851
4	lnc-CCNYL2-10	chr10:42506989-42507177	NONHSAT012851

Extended variants
information (count: 7000 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:7000 , 50 per page) page: 1 2 3 4 5 6 7 ... 140

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs9703043	chr10:42433540-42433541	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs528533131	chr10:42433547-42433548	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs114978854	chr10:42433553-42433554	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs570131272	chr10:42433567-42433568	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs181543577	chr10:42433575-42433576	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs2335061	chr10:42433583-42433584	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	mRNA abundance
7	rs557139929	chr10:42433585-42433586	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs570514115	chr10:42433586-42433587	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs151234519	chr10:42433609-42433610	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs553142714	chr10:42433617-42433618	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs572870706	chr10:42433627-42433628	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs534270097	chr10:42433647-42433648	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs541835231	chr10:42433665-42433666	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs185967152	chr10:42433667-42433668	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs575101770	chr10:42433673-42433674	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs192232370	chr10:42433693-42433694	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs563552062	chr10:42433696-42433697	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs78439269	chr10:42433707-42433708	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs545891430	chr10:42433712-42433713	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs567166602	chr10:42433716-42433717	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs375298251	chr10:42433720-42433721	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs536216994	chr10:42433727-42433728	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs12267425	chr10:42433739-42433740	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs75461754	chr10:42433753-42433754	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs140704873	chr10:42433754-42433755	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs530835489	chr10:42433759-42433760	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs183954397	chr10:42433760-42433761	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs534970855	chr10:42433761-42433762	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs570649758	chr10:42433764-42433765	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs539689207	chr10:42433771-42433772	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs546693363	chr10:42433772-42433773	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs545118346	chr10:42433782-42433783	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs566580327	chr10:42433783-42433784	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs74204408	chr10:42433795-42433796	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs578104027	chr10:42442400-42442401	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs186487227	chr10:42442419-42442420	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs562651947	chr10:42442422-42442423	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs371582143	chr10:42442430-42442431	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs554384783	chr10:42442437-42442438	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs2878326	chr10:42442438-42442439	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs200154814	chr10:42442439-42442440	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs562527984	chr10:42442447-42442448	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs576040785	chr10:42442449-42442450	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs200773672	chr10:42442450-42442451	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs370017889	chr10:42442460-42442461	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs187098063	chr10:42442474-42442475	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs111458060	chr10:42442476-42442477	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs565035539	chr10:42442487-42442488	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs527439142	chr10:42442488-42442489	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs547268078	chr10:42442489-42442490	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	20858243	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42422800-42433800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:42442400-42443000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:42442400-42443200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:42442400-42444000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr10:42443400-42448800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr10:42445000-42448400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:42447800-42449800	ZNF genes & repeats	Liver	Liver
8	chr10:42448000-42458200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:42453200-42454600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
10	chr10:42454000-42456600	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr10:42454000-42457000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
12	chr10:42458400-42461000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr10:42460400-42460600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:42461600-42463200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:42465000-42477400	ZNF genes & repeats	Liver	Liver
16	chr10:42465000-42483000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:42465600-42471000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
18	chr10:42465800-42470600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr10:42466000-42469200	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr10:42471200-42476200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
21	chr10:42472200-42484600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr10:42472400-42479000	ZNF genes & repeats	Adipose Nuclei	Adipose
23	chr10:42472600-42473400	Active TSS	Right Atrium	heart
24	chr10:42473400-42473800	Active TSS	Aorta	Aorta
25	chr10:42474800-42475000	Bivalent/Poised TSS	Right Atrium	heart
26	chr10:42474800-42477600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:42478000-42482800	ZNF genes & repeats	Liver	Liver
28	chr10:42480000-42480800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
29	chr10:42480200-42483000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
30	chr10:42480200-42484600	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr10:42491200-42498800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:42492000-42492600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr10:42493800-42495400	ZNF genes & repeats	Adipose Nuclei	Adipose
34	chr10:42497400-42499200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
35	chr10:42499400-42501800	ZNF genes & repeats	Liver	Liver
36	chr10:42501600-42503000	ZNF genes & repeats	Adipose Nuclei	Adipose
37	chr10:42502400-42523600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:42504000-42506200	ZNF genes & repeats	Adipose Nuclei	Adipose
39	chr10:42505800-42509200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
40	chr10:42506000-42509200	ZNF genes & repeats	Liver	Liver
41	chr10:42506200-42508600	ZNF genes & repeats	Psoas Muscle	Psoas
42	chr10:42509600-42509800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
43	chr10:42509800-42513800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
44	chr10:42510200-42510600	ZNF genes & repeats	Liver	Liver
45	chr10:42513200-42513600	Active TSS	Fetal Heart	heart
46	chr10:42519000-42519400	Active TSS	Right Atrium	heart
47	chr10:42519400-42520400	Weak transcription	Right Atrium	heart
48	chr10:42519600-42521600	ZNF genes & repeats	Adipose Nuclei	Adipose
49	chr10:42519800-42520000	ZNF genes & repeats	Psoas Muscle	Psoas
50	chr10:42520400-42520800	Active TSS	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links