Variant report

Variant	nsv1043044
Chromosome Location	chr13:55102831-55285581
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:55165909..55168648-chr13:55172019..55174969,2	MCF-7	breast:
2	chr13:55225858..55228081-chr13:55229883..55232107,2	MCF-7	breast:
3	chr13:55199830..55202056-chr13:55206437..55209228,2	MCF-7	breast:
4	chr13:55145225..55147281-chr13:55171713..55173554,2	MCF-7	breast:
5	chr13:55109906..55110862-chr13:55819209..55820062,2	MCF-7	breast:
6	chr13:55111967..55114721-chr13:55118788..55120478,2	MCF-7	breast:
7	chr1:114505901..114506720-chr13:55199515..55200372,2	MCF-7	breast:
8	chr13:55111967..55114721-chr13:55118788..55120478,2	MCF-7	breast:
9	chr13:55145343..55147455-chr16:12696633..12698151,2	MCF-7	breast:
10	chr13:55139502..55142309-chr13:55146026..55147750,2	MCF-7	breast:
11	chr13:55145225..55147281-chr13:55171713..55173554,2	MCF-7	breast:
12	chr13:55147191..55149509-chr13:55154393..55156642,2	MCF-7	breast:
13	chr13:55139502..55142309-chr13:55146026..55147750,2	MCF-7	breast:
14	chr13:55165909..55168648-chr13:55172019..55174969,2	MCF-7	breast:
15	chr13:55097700..55099907-chr13:55102895..55105179,2	K562	blood:
16	chr13:55225858..55228081-chr13:55229883..55232107,2	MCF-7	breast:
17	chr13:55199830..55202056-chr13:55206437..55209228,2	MCF-7	breast:
18	chr13:55147191..55149509-chr13:55154393..55156642,2	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OLFM4-5	chr13:55264457-55264577	XLOC_010400
2	lnc-OLFM4-5	chr13:55260674-55260848	XLOC_010400

No data

Variant related genes	Relation type
ENSG00000163349	chromatin interactions
MTMR1	miRNA target sites
THADA	miRNA target sites

Extended variants
information (count: 4024 )
Associated
traits (count: 112 )

Variant overlapped rSNPs/rCNVs (count:4024 , 50 per page) page: 1 2 3 4 5 6 7 ... 81

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs545592855	chr13:55107803-55107804	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs368660612	chr13:55107804-55107805	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs575495394	chr13:55107819-55107820	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs538136304	chr13:55107862-55107863	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs563909696	chr13:55107868-55107869	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs558472985	chr13:55107874-55107875	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs577541979	chr13:55107887-55107888	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs79667902	chr13:55107938-55107939	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs531647623	chr13:55107969-55107970	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs540255966	chr13:55107981-55107982	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs531747329	chr13:55108015-55108016	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs72623347	chr13:55108016-55108017	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs573700328	chr13:55108017-55108018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs542796418	chr13:55108062-55108063	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs11842326	chr13:55108126-55108127	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs145915413	chr13:55108137-55108138	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs531583146	chr13:55108145-55108146	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs181940919	chr13:55108152-55108153	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs565220403	chr13:55108181-55108182	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs529232026	chr13:55109843-55109844	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs542625433	chr13:55109851-55109852	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs562613111	chr13:55109892-55109893	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs531835360	chr13:55109960-55109961	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs181939614	chr13:55109968-55109969	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs201574456	chr13:55110026-55110027	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs369665930	chr13:55110028-55110029	Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs571803115	chr13:55110031-55110032	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs115723406	chr13:55110032-55110033	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs554655819	chr13:55110102-55110103	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs150694161	chr13:55110112-55110113	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs567977232	chr13:55110151-55110152	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs574593510	chr13:55110173-55110174	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs556200320	chr13:55110193-55110194	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs569729212	chr13:55110208-55110209	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs9597000	chr13:55110211-55110212	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs2409103	chr13:55110219-55110220	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs186585112	chr13:55110224-55110225	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs543342453	chr13:55110248-55110249	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs140168439	chr13:55110249-55110250	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs9591607	chr13:55110267-55110268	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs71100837	chr13:55110300-55110301	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs12876480	chr13:55110303-55110304	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs553243920	chr13:55110353-55110354	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs540900907	chr13:55110364-55110365	Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs371498485	chr13:55110365-55110366	Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs563633159	chr13:55110403-55110404	Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs375172637	chr13:55110463-55110464	Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs143816926	chr13:55110477-55110478	Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs17089610	chr13:55110510-55110511	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
50	rs17616641	chr13:55110513-55110514	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:112)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Colorectal cancer	16774939	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prostate cancer	16573809	CNVD
Prostate cancer	18632612	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	19242612	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Prostate cancer	17245344	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	17053054	CNVD
Multiple myeloma	19135901	CNVD
Autism	18414403	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Prostate cancer	16461572	CNVD
Merkel cell carcinoma	19020549	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Breast cancer	21858162	CNVD
Acute myeloid leukemia	21251322	CNVD
Acute myeloid leukemia	17237825	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16272173	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Gastric cancer	17908304	CNVD
Breast cancer	18852474	CNVD
Myelofibrosis	22110671	CNVD
craniofacial dysmorphism	21918468	CNVD
Glioblastoma multiforme	22286061	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Urothelial carcinoma	21177765	CNVD
early-passage human iPS cells	21368824	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:288 , 50 per page) page: 1 2 3 4 5 6

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55107800-55108200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:55109800-55110800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:55109800-55110800	Enhancers	Fetal Heart	heart
4	chr13:55110200-55110600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr13:55110400-55110800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:55123400-55123600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr13:55124200-55126000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:55134200-55135000	Enhancers	Fetal Heart	heart
9	chr13:55136600-55137400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:55136600-55138200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:55144800-55146200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr13:55145800-55146000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr13:55145800-55146000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr13:55146000-55146400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr13:55146000-55146400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr13:55146000-55146600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr13:55146000-55146600	Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr13:55146000-55147400	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr13:55146000-55167000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:55146200-55146400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr13:55146200-55146800	Active TSS	H1 Cell Line	embryonic stem cell
22	chr13:55146200-55146800	Active TSS	HUES64 Cell Line	embryonic stem cell
23	chr13:55146400-55146800	Active TSS	H9 Cell Line	embryonic stem cell
24	chr13:55146400-55146800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr13:55146400-55146800	Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr13:55146400-55146800	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr13:55146400-55146800	Active TSS	iPS-18 Cell Line	embryonic stem cell
28	chr13:55146400-55146800	Active TSS	Placenta	Placenta
29	chr13:55146400-55147200	Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr13:55146600-55148800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr13:55146800-55147600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr13:55146800-55147600	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr13:55146800-55149400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr13:55146800-55155800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr13:55146800-55160000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr13:55147200-55147400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr13:55147200-55147600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr13:55147400-55147800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr13:55147400-55148200	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr13:55147600-55148000	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr13:55147600-55148000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
42	chr13:55147800-55148000	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr13:55148000-55148400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr13:55148000-55155800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr13:55148000-55159600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr13:55148200-55155600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr13:55148400-55148800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr13:55148800-55149400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr13:55148800-55149400	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr13:55149400-55155600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links