Variant report

Variant	nsv1043757
Chromosome Location	chr10:83247947-83351242
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:83272245..83276354-chr10:83281692..83284767,3	MCF-7	breast:
2	chr10:83257478..83259594-chr10:83260723..83262916,2	MCF-7	breast:
3	chr10:83273413..83276377-chr10:83278603..83280338,2	K562	blood:
4	chr10:83273413..83276377-chr10:83278603..83280338,2	K562	blood:
5	chr10:83272245..83276354-chr10:83281692..83284767,3	MCF-7	breast:
6	chr10:83257478..83259594-chr10:83260723..83262916,2	MCF-7	breast:

Extended variants
information (count: 430 )
Associated
traits (count: 60 )

Variant overlapped rSNPs/rCNVs (count:430 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs577456360	chr10:83258019-83258020	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs112846754	chr10:83258040-83258041	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs35456328	chr10:83258046-83258047	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs556347295	chr10:83258056-83258057	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs2346519	chr10:83258059-83258060	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs541723874	chr10:83258077-83258078	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs541147992	chr10:83258117-83258118	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs562036041	chr10:83258204-83258205	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs77216998	chr10:83258232-83258233	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs76851415	chr10:83258233-83258234	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs527268761	chr10:83258249-83258250	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs539587974	chr10:83258288-83258289	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs12269509	chr10:83258298-83258299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs540657820	chr10:83258350-83258351	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs75232893	chr10:83258355-83258356	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs532907328	chr10:83258358-83258359	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs113429844	chr10:83258367-83258368	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs530481356	chr10:83258408-83258409	Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs7072690	chr10:83258436-83258437	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs531956213	chr10:83258498-83258499	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs577582190	chr10:83258523-83258524	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs548581414	chr10:83258532-83258533	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs568771073	chr10:83258544-83258545	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs533933076	chr10:83258599-83258600	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs575601637	chr10:83262618-83262619	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs532728442	chr10:83262624-83262625	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs2103856	chr10:83262625-83262626	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs574660910	chr10:83262630-83262631	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs540476373	chr10:83262632-83262633	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs560465306	chr10:83262648-83262649	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs532403875	chr10:83262656-83262657	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs546131175	chr10:83262657-83262658	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs377287763	chr10:83262658-83262659	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs375340968	chr10:83262679-83262680	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs116447521	chr10:83262697-83262698	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs547956593	chr10:83262707-83262708	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs185993018	chr10:83262708-83262709	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs73305463	chr10:83262715-83262716	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs569374637	chr10:83262734-83262735	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs374656483	chr10:83262760-83262761	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs574678104	chr10:83262771-83262772	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs555656883	chr10:83262777-83262778	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs140211317	chr10:83262779-83262780	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs569126302	chr10:83262780-83262781	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs538264408	chr10:83262788-83262789	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs117426760	chr10:83262790-83262791	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs79434870	chr10:83262791-83262792	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs189321911	chr10:83262814-83262815	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs553971070	chr10:83262841-83262842	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs577127568	chr10:83262843-83262844	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:60)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
small cell lung cancer	20016488	CNVD
Myelofibrosis	22110671	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21364760	CNVD
Urothelial carcinoma	21177765	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:83258000-83258600	Enhancers	Fetal Kidney	kidney
2	chr10:83262600-83263000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:83274200-83275000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:83274200-83275200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:83274800-83275200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:83290000-83290200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:83291600-83293800	Enhancers	Liver	Liver
8	chr10:83307800-83308400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:83308200-83308800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:83323800-83324400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:83328200-83330200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:83328400-83329800	Enhancers	Brain Germinal Matrix	brain
13	chr10:83330200-83331200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:83331000-83331200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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