Variant report

Variant	nsv1043817
Chromosome Location	chr13:87097167-87134263
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:86748899..86749431-chr13:87116065..87116706,2	MCF-7	breast:
2	chr13:86659406..86660238-chr13:87098032..87098996,2	MCF-7	breast:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLITRK6-13	chr13:87121092-87121219	NONHSAT034575
2	lnc-SLITRK6-13	chr13:87121092-87121529	l_895_chr13:87064439-87121529_brain
3	lnc-SLITRK6-13	chr13:87121092-87121515	NONHSAT034577
4	lnc-SLITRK6-13	chr13:87121092-87121362	NONHSAT034578

No data

Extended variants
information (count: 373 )
Associated
traits (count: 89 )

Variant overlapped rSNPs/rCNVs (count:373 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs556862895	chr13:87097178-87097179	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs186689729	chr13:87097238-87097239	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs190725481	chr13:87097241-87097242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs182338555	chr13:87097260-87097261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs4772408	chr13:87097310-87097311	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs186252384	chr13:87097340-87097341	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs141512139	chr13:87097363-87097364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs572856606	chr13:87097394-87097395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs190910668	chr13:87097420-87097421	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs150763003	chr13:87097424-87097425	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs550594398	chr13:87097493-87097494	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs539881862	chr13:87097573-87097574	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs368771280	chr13:87097593-87097594	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs182750804	chr13:87097609-87097610	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs547806706	chr13:87097637-87097638	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs559986774	chr13:87097638-87097639	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs188446880	chr13:87097639-87097640	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs533639106	chr13:87097694-87097695	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs192852420	chr13:87097711-87097712	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs558649660	chr13:87097740-87097741	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs139583660	chr13:87097742-87097743	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs182872116	chr13:87097753-87097754	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs556857019	chr13:87097787-87097788	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs12876177	chr13:87097797-87097798	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs542215868	chr13:87097838-87097839	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs372464450	chr13:87097869-87097870	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs538443678	chr13:87097878-87097879	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs35723673	chr13:87097882-87097883	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs572506565	chr13:87097908-87097909	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs76622017	chr13:87097923-87097924	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs564647288	chr13:87097933-87097934	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs145109301	chr13:87097947-87097948	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs532196512	chr13:87097967-87097968	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs147571521	chr13:87097972-87097973	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs544403506	chr13:87097973-87097974	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs192271863	chr13:87097995-87097996	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs183960059	chr13:87098015-87098016	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs200775931	chr13:87098032-87098033	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs548115751	chr13:87098054-87098055	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs369922033	chr13:87098060-87098061	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs566112648	chr13:87098161-87098162	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs189276562	chr13:87098165-87098166	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs572391204	chr13:87098232-87098233	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs570537540	chr13:87098252-87098253	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs538008057	chr13:87098264-87098265	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs141954851	chr13:87098281-87098282	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs114699850	chr13:87098322-87098323	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs150074509	chr13:87098339-87098340	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs373773266	chr13:87098399-87098400	Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs192547716	chr13:87098404-87098405	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:89)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Prostate cancer	18632612	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Prostate cancer	16573809	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Basal cell lymphoma	17053054	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
abnormal development	18461090	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	21965145	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Cancer	21220470	CNVD
Cancer	21183584	CNVD
Omodysplasia	19481194	CNVD
Breast cancer	22032731	CNVD
Congenital anomalies of the kidney and urinary tract	20467480	CNVD
Cancer	17160897	CNVD
Mantle cell lymphoma	19690137	CNVD
Rhabdomyosarcoma	17210683	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Non-small cell lung cancer	16651412	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Melanoma	20877625	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87096600-87098000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:87097400-87098000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:87097600-87098600	Enhancers	NH-A	brain
4	chr13:87097800-87099000	Enhancers	Hela-S3	cervix
5	chr13:87097800-87099200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:87098000-87098400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:87098000-87099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:87098000-87099000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr13:87098000-87099000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr13:87098000-87099200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr13:87098000-87099800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr13:87098000-87100000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr13:87098200-87099000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:87098200-87099000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:87098400-87098800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr13:87098400-87098800	Enhancers	Fetal Lung	lung
17	chr13:87098400-87099000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr13:87098400-87099400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:87098600-87099000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr13:87098800-87099800	Weak transcription	Fetal Lung	lung
21	chr13:87098800-87102800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr13:87099800-87100000	Enhancers	Fetal Lung	lung
23	chr13:87105200-87105600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr13:87116400-87117200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr13:87116800-87117000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr13:87117200-87118200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr13:87117200-87118200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr13:87118200-87118600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr13:87118200-87118600	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr13:87118200-87118800	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr13:87118200-87118800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr13:87118400-87118600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr13:87129000-87129200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr13:87129000-87129200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr13:87134200-87134800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr13:87134200-87134800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr13:87134200-87135600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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