Variant report

Variant	nsv1044537
Chromosome Location	chr10:42463534-42635506
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:60)
LncRNA
region (count:10)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:60 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr10:42531427..42532425-chr11:19922614..19923134,2	MCF-7	breast:
2	chr10:42531904..42532590-chr13:98148609..98149589,2	MCF-7	breast:
3	chr1:121482971..121485434-chr10:42543133..42544641,3	MCF-7	breast:
4	chr10:42528075..42531081-chr19:27735905..27739791,6	MCF-7	breast:
5	chr10:10531872..10532392-chr10:42529084..42529944,2	MCF-7	breast:
6	chr10:42528436..42531081-chr19:27736662..27739367,4	MCF-7	breast:
7	chr1:121482838..121485428-chr10:42529461..42532722,10	K562	blood:
8	chr10:42398850..42399800-chr10:42529302..42530219,2	MCF-7	breast:
9	chr10:42527395..42527915-chr7:61970565..61971091,3	MCF-7	breast:
10	chr10:42527395..42527914-chr7:61968778..61969295,2	MCF-7	breast:
11	chr10:42529603..42530301-chr17:58166691..58167257,2	MCF-7	breast:
12	chr1:121484711..121485401-chr10:42532112..42532774,3	MCF-7	breast:
13	chr10:42529421..42530247-chr2:12411785..12412750,2	MCF-7	breast:
14	chr10:42529561..42531107-chr15:41406107..41408391,2	MCF-7	breast:
15	chr10:42525601..42527915-chr7:61967079..61969468,3	K562	blood:
16	chr10:42528302..42530981-chr19:27731210..27733512,2	MCF-7	breast:
17	chr10:42526395..42527915-chr7:61967791..61969507,5	MCF-7	breast:
18	chr10:42529415..42529944-chr19:27739260..27739782,2	MCF-7	breast:
19	chr10:42530145..42531061-chr19:27738673..27739367,3	MCF-7	breast:
20	chr10:42526475..42528192-chr19:27731227..27733212,2	MCF-7	breast:
21	chr1:224620434..224622448-chr10:42530903..42532481,2	MCF-7	breast:
22	chr1:121484917..121485418-chr10:42529872..42530372,2	MCF-7	breast:
23	chr1:121484906..121485408-chr10:42529869..42530392,2	MCF-7	breast:
24	chr10:42528102..42529921-chr12:34831375..34832895,2	K562	blood:
25	chr1:121484509..121485410-chr10:42528540..42529041,2	MCF-7	breast:
26	chr10:42532112..42532613-chr19:27734969..27735848,2	MCF-7	breast:
27	chr10:42525601..42527915-chr7:61967079..61969278,2	K562	blood:
28	chr10:42528736..42531443-chr2:73087371..73089045,2	MCF-7	breast:
29	chr1:121482838..121485428-chr10:42528872..42531081,8	K562	blood:
30	chr10:42399009..42399706-chr10:42529715..42530239,2	MCF-7	breast:
31	chr10:42529302..42529920-chr19:27734982..27735519,2	MCF-7	breast:
32	chr1:121484705..121485362-chr10:42530459..42531081,4	MCF-7	breast:
33	chr10:42530427..42532590-chr8:46977725..46979226,2	MCF-7	breast:
34	chr10:42526394..42527915-chr7:61967791..61969362,3	MCF-7	breast:
35	chr1:121484020..121484634-chr10:42530561..42531081,2	MCF-7	breast:
36	chr1:121484702..121485223-chr10:42530561..42531081,2	MCF-7	breast:
37	chr10:42398850..42399487-chr10:42529302..42530228,2	MCF-7	breast:
38	chr10:42532093..42532747-chr2:154892410..154892910,2	MCF-7	breast:
39	chr10:42528106..42531063-chr19:27736683..27739174,2	K562	blood:
40	chr10:42528107..42529933-chr8:110778066..110779566,2	MCF-7	breast:
41	chr1:121484862..121485397-chr10:42530581..42531081,2	MCF-7	breast:
42	chr10:42529082..42529941-chr19:27738664..27739193,3	MCF-7	breast:
43	chr1:121483719..121484637-chr10:42529281..42529801,2	MCF-7	breast:
44	chr10:42527395..42527923-chr7:61968860..61969524,4	MCF-7	breast:
45	chr10:42530126..42531081-chr19:27738662..27739344,3	MCF-7	breast:
46	chr10:42529442..42530392-chr19:27737662..27738480,2	MCF-7	breast:
47	chr1:121484520..121485419-chr10:42530561..42531081,2	K562	blood:
48	chr10:42530906..42532591-chr12:125398363..125400597,2	MCF-7	breast:
49	chr10:42529282..42529919-chr2:134391577..134392424,2	MCF-7	breast:
50	chr10:42530231..42530737-chr16:29006682..29007182,2	MCF-7	breast:

(count:10 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNYL2-10	chr10:42506989-42507177	NONHSAT012851
2	lnc-CCNYL2-9	chr10:42598751-42598801	NONHSAT012853
3	lnc-CCNYL2-10	chr10:42498812-42498914	NONHSAT012851
4	lnc-BMS1-10	chr10:42529283-42529832	NONHSAT012852
5	lnc-CCNYL2-9	chr10:42596697-42596905	NONHSAT012853
6	lnc-BMS1-10	chr10:42529998-42530003	FPKM1_group_3228_transcript_1
7	lnc-BMS1-10	chr10:42529283-42529832	FPKM1_group_3228_transcript_1
8	lnc-CCNYL2-10	chr10:42489651-42489811	NONHSAT012851
9	lnc-CCNYL2-10	chr10:42501405-42501470	NONHSAT012851
10	lnc-BMS1-10	chr10:42529998-42530057	NONHSAT012852

No data

Variant related genes	Relation type
ENSG00000143786	chromatin interactions
ENSG00000265345	chromatin interactions
ENSG00000150991	chromatin interactions
ENSG00000162923	chromatin interactions
ENSG00000128908	chromatin interactions

Extended variants
information (count: 12151 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:12151 , 50 per page) page: 1 2 3 4 5 6 7 ... 244

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs578018489	chr10:42465027-42465028	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs377590732	chr10:42465032-42465033	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs568525636	chr10:42465050-42465051	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs534018923	chr10:42465065-42465066	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs78018203	chr10:42465068-42465069	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs543086921	chr10:42465070-42465071	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs538469924	chr10:42465097-42465098	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs117790958	chr10:42465099-42465100	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs576407636	chr10:42465100-42465101	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs545160260	chr10:42465102-42465103	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs9663767	chr10:42465110-42465111	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
12	rs183844777	chr10:42465139-42465140	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs547172043	chr10:42465161-42465162	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs560689411	chr10:42465165-42465166	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs529602083	chr10:42465182-42465183	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs549369276	chr10:42465197-42465198	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs186169250	chr10:42465202-42465203	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs531894980	chr10:42465203-42465204	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs191024278	chr10:42465205-42465206	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs182095564	chr10:42465233-42465234	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs146114892	chr10:42465255-42465256	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs553966580	chr10:42465258-42465259	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs567773485	chr10:42465262-42465263	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs559102850	chr10:42465267-42465268	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs140153519	chr10:42465277-42465278	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs186733870	chr10:42465281-42465282	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs116546466	chr10:42465382-42465383	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs116967226	chr10:42465383-42465384	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs9664345	chr10:42465390-42465391	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs191497861	chr10:42465393-42465394	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs143892165	chr10:42465395-42465396	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs548432662	chr10:42465404-42465405	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs144818291	chr10:42465406-42465407	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs148586742	chr10:42465411-42465412	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs75617081	chr10:42465418-42465419	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs529761174	chr10:42465422-42465423	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs79767843	chr10:42465425-42465426	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs78597902	chr10:42465426-42465427	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs578182365	chr10:42465441-42465442	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs76648199	chr10:42465449-42465450	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs79966747	chr10:42465456-42465457	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs76014735	chr10:42465457-42465458	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs76944333	chr10:42465459-42465460	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs72802083	chr10:42465472-42465473	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs80159386	chr10:42465485-42465486	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs530060802	chr10:42465486-42465487	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs79491614	chr10:42465487-42465488	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs112358026	chr10:42465490-42465491	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs76976883	chr10:42465500-42465501	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs74469205	chr10:42465503-42465504	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Pancreatic cancer	17952125	CNVD
Autism	20531469	CNVD

Chromatin state (count:1318 , 50 per page) page: 1 2 3 4 5 6 7 ... 27

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42465000-42477400	ZNF genes & repeats	Liver	Liver
2	chr10:42465000-42483000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:42465600-42471000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr10:42465800-42470600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr10:42466000-42469200	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr10:42471200-42476200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr10:42472200-42484600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr10:42472400-42479000	ZNF genes & repeats	Adipose Nuclei	Adipose
9	chr10:42472600-42473400	Active TSS	Right Atrium	heart
10	chr10:42473400-42473800	Active TSS	Aorta	Aorta
11	chr10:42474800-42475000	Bivalent/Poised TSS	Right Atrium	heart
12	chr10:42474800-42477600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:42478000-42482800	ZNF genes & repeats	Liver	Liver
14	chr10:42480000-42480800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
15	chr10:42480200-42483000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
16	chr10:42480200-42484600	ZNF genes & repeats	Adipose Nuclei	Adipose
17	chr10:42491200-42498800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr10:42492000-42492600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr10:42493800-42495400	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr10:42497400-42499200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
21	chr10:42499400-42501800	ZNF genes & repeats	Liver	Liver
22	chr10:42501600-42503000	ZNF genes & repeats	Adipose Nuclei	Adipose
23	chr10:42502400-42523600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:42504000-42506200	ZNF genes & repeats	Adipose Nuclei	Adipose
25	chr10:42505800-42509200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
26	chr10:42506000-42509200	ZNF genes & repeats	Liver	Liver
27	chr10:42506200-42508600	ZNF genes & repeats	Psoas Muscle	Psoas
28	chr10:42509600-42509800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr10:42509800-42513800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
30	chr10:42510200-42510600	ZNF genes & repeats	Liver	Liver
31	chr10:42513200-42513600	Active TSS	Fetal Heart	heart
32	chr10:42519000-42519400	Active TSS	Right Atrium	heart
33	chr10:42519400-42520400	Weak transcription	Right Atrium	heart
34	chr10:42519600-42521600	ZNF genes & repeats	Adipose Nuclei	Adipose
35	chr10:42519800-42520000	ZNF genes & repeats	Psoas Muscle	Psoas
36	chr10:42520400-42520800	Active TSS	Right Atrium	heart
37	chr10:42520800-42525800	Weak transcription	Right Atrium	heart
38	chr10:42523000-42523200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr10:42523200-42525800	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr10:42525400-42526200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
41	chr10:42525400-42533200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
42	chr10:42525600-42526200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr10:42525600-42526200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:42525600-42526200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
45	chr10:42525600-42526200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
46	chr10:42525600-42526200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:42525600-42526200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:42525600-42526200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
49	chr10:42525600-42526200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:42525600-42526200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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