Variant report

Variant	nsv10448
Chromosome Location	chr4:9619170-9633207
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1105 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:1105 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112862697	chr4:9619205-9619206	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs75177643	chr4:9619219-9619220	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs78132336	chr4:9619232-9619233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs74601525	chr4:9619249-9619250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs75579322	chr4:9619258-9619259	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs186318757	chr4:9619274-9619275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs77994025	chr4:9619292-9619293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs111659315	chr4:9619320-9619321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs199896628	chr4:9619326-9619327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs377481320	chr4:9619346-9619347	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs201030109	chr4:9619348-9619349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112272292	chr4:9619362-9619363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs113590969	chr4:9619377-9619378	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs142252720	chr4:9619380-9619381	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs150310832	chr4:9619389-9619390	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs138975949	chr4:9619390-9619391	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs139470226	chr4:9619394-9619395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs147607742	chr4:9619398-9619399	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs148914987	chr4:9619399-9619400	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs144693107	chr4:9619415-9619416	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs138323863	chr4:9619416-9619417	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs113559953	chr4:9619424-9619425	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs147834330	chr4:9619433-9619434	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs375351318	chr4:9619439-9619440	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs149036428	chr4:9619440-9619441	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs145781005	chr4:9619446-9619447	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs138681522	chr4:9619447-9619448	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs182743492	chr4:9619481-9619482	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs536977866	chr4:9619485-9619486	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs186504508	chr4:9619489-9619490	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs190891982	chr4:9619490-9619491	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs578104548	chr4:9619492-9619493	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs183061990	chr4:9619493-9619494	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs555252970	chr4:9619504-9619505	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs144622462	chr4:9619509-9619510	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs375136795	chr4:9619524-9619525	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs572421308	chr4:9619530-9619531	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187370048	chr4:9619538-9619539	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs28479838	chr4:9619548-9619549	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs531926688	chr4:9619550-9619551	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs192147630	chr4:9619572-9619573	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs565194887	chr4:9619575-9619576	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs183179606	chr4:9619580-9619581	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs369538980	chr4:9619681-9619682	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
45	rs546951838	chr4:9619688-9619689	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs576597316	chr4:9619702-9619703	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs371838153	chr4:9619721-9619722	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs375462258	chr4:9619726-9619727	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
49	rs543617911	chr4:9619727-9619728	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs565786530	chr4:9619742-9619743	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Sezary syndrome	18413736	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Urothelial carcinoma	21177765	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	23813976	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:9606000-9619400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:9611000-9619600	Weak transcription	Thymus	Thymus
3	chr4:9615000-9619400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:9619400-9621000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:9619400-9621200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:9619800-9628200	Weak transcription	Ovary	ovary
7	chr4:9624800-9637600	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:9625200-9629400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr4:9626000-9631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:9626800-9631200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:9627000-9639000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:9627400-9630600	Weak transcription	Fetal Brain Female	brain
13	chr4:9627800-9634400	Weak transcription	Brain Anterior Caudate	brain
14	chr4:9628200-9630400	Strong transcription	Ovary	ovary
15	chr4:9628600-9630800	Weak transcription	Brain Angular Gyrus	brain
16	chr4:9629400-9630000	Strong transcription	Stomach Smooth Muscle	stomach
17	chr4:9630000-9631600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:9630400-9632000	Weak transcription	Ovary	ovary

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