Variant report

Variant	nsv1046155
Chromosome Location	chr15:55123603-55137606
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 540 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:540 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs562032563	chr15:55123683-55123684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs188066461	chr15:55123732-55123733	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs112531843	chr15:55123782-55123783	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs1915199	chr15:55123794-55123795	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs1915200	chr15:55123808-55123809	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs8038304	chr15:55123820-55123821	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs575429354	chr15:55123876-55123877	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs573626338	chr15:55123888-55123889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs544269784	chr15:55123918-55123919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs79375914	chr15:55123925-55123926	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs578094966	chr15:55123941-55123942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs540465601	chr15:55123998-55123999	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs542721664	chr15:55124079-55124080	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs560867320	chr15:55124119-55124120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs529526585	chr15:55124150-55124151	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs548978993	chr15:55124151-55124152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs145095592	chr15:55124167-55124168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs376687607	chr15:55124225-55124226	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs113634143	chr15:55124228-55124229	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs551811493	chr15:55124250-55124251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs373865029	chr15:55124268-55124269	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs571639941	chr15:55124270-55124271	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs368131811	chr15:55124283-55124284	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs533201679	chr15:55124341-55124342	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs111759036	chr15:55124374-55124375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs371618599	chr15:55124378-55124379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs546456598	chr15:55124405-55124406	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs140601330	chr15:55124406-55124407	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535714551	chr15:55124410-55124411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs8043485	chr15:55124413-55124414	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs190844781	chr15:55124440-55124441	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs537556948	chr15:55124503-55124504	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs544847638	chr15:55124528-55124529	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs557878656	chr15:55124541-55124542	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs577640403	chr15:55124597-55124598	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs182606349	chr15:55124606-55124607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs6493721	chr15:55124659-55124660	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs113721952	chr15:55124667-55124668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs187850550	chr15:55124678-55124679	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs574015875	chr15:55124681-55124682	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs150492815	chr15:55124720-55124721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs542864632	chr15:55124749-55124750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs562552109	chr15:55124847-55124848	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs111392908	chr15:55124931-55124932	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs74017626	chr15:55124963-55124964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs565407041	chr15:55124967-55124968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs527770401	chr15:55125005-55125006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs138146783	chr15:55125041-55125042	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs118091825	chr15:55125051-55125052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs372616802	chr15:55125056-55125057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Myelofibrosis	22110671	CNVD
Acute monocytic leukemia	16498392	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Urothelial carcinoma	21177765	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Cancer	17440070	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55117600-55131800	Weak transcription	Aorta	Aorta
2	chr15:55123400-55125400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr15:55125400-55125600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:55131000-55131800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr15:55131000-55132400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr15:55131200-55132400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr15:55131200-55133200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr15:55131200-55133200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:55131800-55132000	Flanking Active TSS	Aorta	Aorta
10	chr15:55131800-55132800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:55131800-55133200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr15:55132000-55132200	Active TSS	Aorta	Aorta
13	chr15:55132000-55133200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr15:55132000-55133200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:55132400-55132800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:55132800-55133200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr15:55133000-55133200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr15:55133000-55133200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr15:55133000-55133200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:55134200-55136200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr15:55134400-55134600	Enhancers	Skeletal Muscle Female	skeletal muscle

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