Variant report

Variant	nsv1046166
Chromosome Location	chr10:1896940-1912541
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:1910694..1913328-chr10:1934835..1936567,2	MCF-7	breast:
2	chr10:1892660..1894538-chr10:1897061..1899093,2	K562	blood:

Extended variants
information (count: 893 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:893 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs11250830	chr10:1896940-1896941	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs570341615	chr10:1896941-1896942	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs372418055	chr10:1896953-1896954	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs375884379	chr10:1896961-1896962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs566188310	chr10:1896990-1896991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs534698064	chr10:1897004-1897005	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112479427	chr10:1897062-1897063	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs557678436	chr10:1897071-1897072	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs377674526	chr10:1897072-1897073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs373631223	chr10:1897074-1897075	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs537065719	chr10:1897084-1897085	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs556943378	chr10:1897112-1897113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs573864813	chr10:1897124-1897125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs542585519	chr10:1897135-1897136	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs559497964	chr10:1897171-1897172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs73598658	chr10:1897181-1897182	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs188867780	chr10:1897184-1897185	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs11599065	chr10:1897192-1897193	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs201047509	chr10:1897195-1897196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs141587040	chr10:1897201-1897202	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs549746978	chr10:1897204-1897205	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs181625706	chr10:1897248-1897249	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs529586630	chr10:1897265-1897266	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs373359233	chr10:1897293-1897294	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs556996188	chr10:1897360-1897361	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs549451273	chr10:1897388-1897389	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs73598659	chr10:1897409-1897410	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
28	rs12571224	chr10:1897424-1897425	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs551473439	chr10:1897506-1897507	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs186138359	chr10:1897522-1897523	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs111620463	chr10:1897546-1897547	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs537179406	chr10:1897553-1897554	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs556897265	chr10:1897557-1897558	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs573604164	chr10:1897564-1897565	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs12267019	chr10:1897568-1897569	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs11250831	chr10:1897572-1897573	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs36029969	chr10:1897625-1897626	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs572670918	chr10:1897646-1897647	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs544816905	chr10:1897653-1897654	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs190708188	chr10:1897695-1897696	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs10903569	chr10:1897722-1897723	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs180724056	chr10:1897736-1897737	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs563689830	chr10:1897737-1897738	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs541668419	chr10:1897752-1897753	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs539528736	chr10:1897773-1897774	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs186108010	chr10:1897781-1897782	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs10903570	chr10:1897790-1897791	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs78097053	chr10:1897807-1897808	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs137915349	chr10:1897811-1897812	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs143471105	chr10:1897857-1897858	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Autism	22543975	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1895600-1912800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:1895800-1897800	Weak transcription	Fetal Brain Male	brain
3	chr10:1897200-1899400	Enhancers	Brain Germinal Matrix	brain
4	chr10:1897800-1898000	Enhancers	Fetal Brain Male	brain
5	chr10:1898000-1898400	Weak transcription	Fetal Brain Male	brain
6	chr10:1898400-1898800	Enhancers	Fetal Brain Male	brain
7	chr10:1899400-1900000	Weak transcription	Brain Germinal Matrix	brain
8	chr10:1899600-1900000	Enhancers	Hela-S3	cervix
9	chr10:1900000-1900200	Enhancers	Brain Germinal Matrix	brain
10	chr10:1900200-1900600	Enhancers	Hela-S3	cervix
11	chr10:1900400-1901000	Enhancers	Gastric	stomach
12	chr10:1900400-1901200	Enhancers	Dnd41	blood

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