Variant report

Variant	nsv10469
Chromosome Location	chr4:28581819-28585615
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 159 )
Associated
traits (count: 54 )

Variant overlapped rSNPs/rCNVs (count:159 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs148711649	chr4:28581829-28581830	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs142475960	chr4:28581888-28581889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs537383565	chr4:28581896-28581897	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs557289910	chr4:28581898-28581899	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs574993969	chr4:28582109-28582110	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs573909162	chr4:28582144-28582145	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs542827175	chr4:28582161-28582162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs562225310	chr4:28582165-28582166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572419612	chr4:28582168-28582169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs146882944	chr4:28582204-28582205	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs544043323	chr4:28582229-28582230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs34812904	chr4:28582231-28582232	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs34819719	chr4:28582232-28582233	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs533143605	chr4:28582236-28582237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs375487811	chr4:28582242-28582243	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs2458631	chr4:28582248-28582249	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs111555165	chr4:28582297-28582298	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs193300706	chr4:28582301-28582302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs565772038	chr4:28582320-28582321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs528135282	chr4:28582323-28582324	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs551448078	chr4:28582357-28582358	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs28610055	chr4:28582376-28582377	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs537022538	chr4:28582383-28582384	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs73215424	chr4:28582402-28582403	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs185512904	chr4:28582408-28582409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs112555433	chr4:28582416-28582417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs536472075	chr4:28582461-28582462	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs552843787	chr4:28582469-28582470	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs17643041	chr4:28582488-28582489	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs144402951	chr4:28582489-28582490	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs17699721	chr4:28582620-28582621	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs188795221	chr4:28582648-28582649	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs543379185	chr4:28582667-28582668	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs371527886	chr4:28582753-28582754	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs529499116	chr4:28582779-28582780	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs191996865	chr4:28582802-28582803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs559737176	chr4:28582803-28582804	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs571026850	chr4:28582806-28582807	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs544498614	chr4:28582817-28582818	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs2471706	chr4:28582819-28582820	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs551214876	chr4:28582901-28582902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs116130842	chr4:28582905-28582906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs113767410	chr4:28582907-28582908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs550566050	chr4:28582927-28582928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs372421685	chr4:28582937-28582938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs10939218	chr4:28582951-28582952	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs555968434	chr4:28582965-28582966	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs368955754	chr4:28582966-28582967	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs553220711	chr4:28582987-28582988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566594082	chr4:28583027-28583028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:54)

Disease	PMID	Source
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
Oral squamous cell carcinoma	17134496	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Lung cancer	18438408	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Cancer	21183584	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	16608533	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	22183965	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Olfactory neuroblastoma	18408657	CNVD
Burkitt''s lymphoma	20823134	CNVD
Cancer	22183965	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Prostate cancer	16573809	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28570600-28587400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28583600-28583800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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