Variant report

Variant	nsv1047260
Chromosome Location	chr15:52257100-52337418
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3138)
CpG islands
(count:1713)
Chromatin interactive
region (count:208)
LncRNA
region (count:16)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3138 , 50 per page) page: 1 2 3 4 5 6 7 ... 63

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:52262314-52262958	HepG2	liver:	n/a	n/a
2	ARID3A	chr15:52313326-52313890	HepG2	liver:	n/a	n/a
3	ARID3A	chr15:52301038-52301580	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:52310974-52311277	K562	blood:	n/a	n/a
5	ARID3A	chr15:52263763-52264015	K562	blood:	n/a	n/a
6	ARID3A	chr15:52311081-52311524	HepG2	liver:	n/a	chr15:52311459-52311467
7	ARID3A	chr15:52300842-52301499	K562	blood:	n/a	n/a
8	ARID3A	chr15:52313069-52313903	K562	blood:	n/a	n/a
9	ARID3A	chr15:52312056-52312360	K562	blood:	n/a	n/a
10	ARID3A	chr15:52273801-52275191	K562	blood:	n/a	n/a
11	ARID3A	chr15:52306374-52306381	K562	blood:	n/a	n/a
12	ARID3A	chr15:52298599-52299060	HepG2	liver:	n/a	n/a
13	ARID3A	chr15:52273760-52274828	HepG2	liver:	n/a	n/a
14	ARID3A	chr15:52305318-52306072	K562	blood:	n/a	n/a
15	ARID3A	chr15:52263834-52264340	HepG2	liver:	n/a	n/a
16	ARID3A	chr15:52304090-52304268	K562	blood:	n/a	n/a
17	ARID3A	chr15:52285232-52285745	HepG2	liver:	n/a	n/a
18	ATF1	chr15:52263791-52264194	K562	blood:	n/a	n/a
19	ATF1	chr15:52313354-52313693	K562	blood:	n/a	n/a
20	ATF1	chr15:52300967-52301527	K562	blood:	n/a	n/a
21	ATF1	chr15:52305294-52305888	K562	blood:	n/a	n/a
22	ATF1	chr15:52273750-52274071	K562	blood:	n/a	n/a
23	ATF1	chr15:52310954-52311566	K562	blood:	n/a	n/a
24	ATF1	chr15:52274395-52274759	K562	blood:	n/a	n/a
25	ATF1	chr15:52303152-52303572	K562	blood:	n/a	n/a
26	ATF2	chr15:52263565-52264188	H1-hESC	embryonic stem cell:	n/a	n/a
27	ATF2	chr15:52311161-52311614	H1-hESC	embryonic stem cell:	n/a	n/a
28	ATF2	chr15:52299718-52300806	GM12878	blood:	n/a	n/a
29	ATF2	chr15:52313042-52313851	GM12878	blood:	n/a	n/a
30	ATF2	chr15:52263763-52264266	H1-hESC	embryonic stem cell:	n/a	n/a
31	ATF2	chr15:52274133-52274800	GM12878	blood:	n/a	n/a
32	ATF2	chr15:52305243-52306079	GM12878	blood:	n/a	n/a
33	ATF2	chr15:52274216-52274906	GM12878	blood:	n/a	n/a
34	ATF2	chr15:52305245-52306047	GM12878	blood:	n/a	n/a
35	ATF2	chr15:52298010-52299530	GM12878	blood:	n/a	n/a
36	ATF2	chr15:52303013-52303545	GM12878	blood:	n/a	n/a
37	ATF2	chr15:52310959-52311514	GM12878	blood:	n/a	n/a
38	ATF2	chr15:52298102-52299577	GM12878	blood:	n/a	n/a
39	ATF2	chr15:52263714-52264280	GM12878	blood:	n/a	n/a
40	ATF2	chr15:52303059-52303490	GM12878	blood:	n/a	n/a
41	ATF2	chr15:52263616-52264275	GM12878	blood:	n/a	n/a
42	ATF2	chr15:52311012-52311599	GM12878	blood:	n/a	n/a
43	ATF2	chr15:52313258-52313920	GM12878	blood:	n/a	n/a
44	ATF2	chr15:52311956-52312875	GM12878	blood:	n/a	n/a
45	ATF3	chr15:52311958-52312251	K562	blood:	n/a	n/a
46	ATF3	chr15:52263741-52264269	H1-hESC	embryonic stem cell:	n/a	chr15:52264167-52264176
47	ATF3	chr15:52311886-52312317	K562	blood:	n/a	chr15:52311904-52311913
48	ATF3	chr15:52273734-52274129	K562	blood:	n/a	n/a
49	ATF3	chr15:52311859-52312540	A549	lung:	n/a	chr15:52311904-52311913
50	ATF3	chr15:52263605-52264191	HepG2	liver:	n/a	chr15:52263630-52263639 chr15:52264167-52264176

(count:1713 , 50 per page) page: 1 2 3 4 5 6 7 ... 35

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:52311484-52311534	HCF	heart:	n/a
2	chr15:52311631-52311681	HEEpiC	esophagus:	n/a
3	chr15:52263597-52263647	HCPEpiC	choroid plexus:	n/a
4	chr15:52264074-52264124	HCM	heart:	n/a
5	chr15:52311484-52311534	GM12878	blood:	n/a
6	chr15:52311484-52311534	HCF	heart:	n/a
7	chr15:52311631-52311681	HEEpiC	esophagus:	n/a
8	chr15:52263597-52263647	HCPEpiC	choroid plexus:	n/a
9	chr15:52264074-52264124	HCM	heart:	n/a
10	chr15:52311484-52311534	GM12878	blood:	n/a
11	chr15:52264074-52264124	HIPEpiC	eye:	n/a
12	chr15:52260669-52260719	HUVEC	blood vessel:	n/a
13	chr15:52264396-52264446	CMK	blood:	n/a
14	chr15:52267193-52267243	NHBE	bronchial:	n/a
15	chr15:52263597-52263647	HUVEC	blood vessel:	n/a
16	chr15:52267193-52267243	HRE	kidney:	n/a
17	chr15:52267193-52267243	SK-N-SH_RA	brain:	n/a
18	chr15:52308123-52308173	LNCaP	prostate:	n/a
19	chr15:52263839-52263889	PrEC	prostate:	n/a
20	chr15:52263839-52263889	HAEpiC	amniotic membrane:	n/a
21	chr15:52311380-52311430	NHBE	bronchial:	n/a
22	chr15:52311221-52311271	GM19239	blood:	n/a
23	chr15:52310788-52310838	Caco-2	colon:	n/a
24	chr15:52274433-52274483	HRE	kidney:	n/a
25	chr15:52264224-52264274	IMR90	lung:	fetal
26	chr15:52311484-52311534	A549	lung:	n/a
27	chr15:52263485-52263535	HRCEpiC	kidney:	n/a
28	chr15:52264097-52264147	ECC-1	luminal epithelium:	n/a
29	chr15:52264097-52264147	AG10803	skin:	n/a
30	chr15:52264060-52264110	HEK293	kidney:	embryo
31	chr15:52260669-52260719	Hepatocyte	liver:	n/a
32	chr15:52310788-52310838	HAEpiC	amniotic membrane:	n/a
33	chr15:52264224-52264274	Caco-2	colon:	n/a
34	chr15:52311631-52311681	GM19239	blood:	n/a
35	chr15:52264097-52264147	HRPEpiC	eye:	n/a
36	chr15:52264133-52264183	HCPEpiC	choroid plexus:	n/a
37	chr15:52312166-52312216	MCF10A-Er-Src	breast:	n/a
38	chr15:52263485-52263535	U87	brain:	n/a
39	chr15:52311035-52311085	HRE	kidney:	n/a
40	chr15:52264097-52264147	GM12891	blood:	n/a
41	chr15:52263597-52263647	Caco-2	colon:	n/a
42	chr15:52311035-52311085	SKMC	muscle:	n/a
43	chr15:52312166-52312216	NB4	blood:	n/a
44	chr15:52264224-52264274	Hela-S3	cervix:	n/a
45	chr15:52264224-52264274	T-47D	breast:	n/a
46	chr15:52311484-52311534	BE2_C	brain:	n/a
47	chr15:52264060-52264110	ECC-1	luminal epithelium:	n/a
48	chr15:52263597-52263647	IMR90	lung:	fetal
49	chr15:52308123-52308173	AG09309	skin:	n/a
50	chr15:52333688-52333738	SAEC	small airway:	n/a

(count:208 , 50 per page) page: 1 2 3 4 5

No.	Distal block	Cell Line	Cell type
1	chr15:52250021..52252100-chr15:52255558..52257504,2	MCF-7	breast:
2	chr15:52273041..52275862-chr15:52300749..52303075,2	MCF-7	breast:
3	chr15:52264035..52264681-chr19:46498316..46499226,2	NB4	blood:
4	chr15:52261233..52265470-chr15:52469433..52474401,7	MCF-7	breast:
5	chr15:52318091..52320870-chr15:52417132..52419787,2	K562	blood:
6	chr15:51914606..51918105-chr15:52309438..52311518,3	K562	blood:
7	chr15:52316174..52318031-chr15:52336524..52338315,2	MCF-7	breast:
8	chr15:52263208..52265625-chr15:52404085..52407650,4	MCF-7	breast:
9	chr11:9481906..9482892-chr15:52311101..52311641,2	Hela-S3	cervix:
10	chr15:52272788..52276993-chr15:52369760..52371998,4	MCF-7	breast:
11	chr15:52327906..52330801-chr15:52336087..52340276,6	MCF-7	breast:
12	chr15:52307141..52308923-chr15:52319754..52321972,2	K562	blood:
13	chr15:52309643..52312109-chr15:52424380..52429568,4	MCF-7	breast:
14	chr15:52286844..52289009-chr15:52299646..52301186,2	MCF-7	breast:
15	chr15:52263578..52264205-chr16:30905028..30905583,2	Hela-S3	cervix:
16	chr15:52261501..52265817-chr15:52284354..52288091,7	MCF-7	breast:
17	chr15:52029435..52031649-chr15:52311154..52313570,2	K562	blood:
18	chr15:52288929..52291542-chr15:52296453..52298744,2	MCF-7	breast:
19	chr15:52323591..52325399-chr15:52331469..52333849,2	MCF-7	breast:
20	chr15:52258924..52260672-chr15:52262065..52263877,2	K562	blood:
21	chr15:52273761..52275142-chr15:52431751..52433231,16	MCF-7	breast:
22	chr15:52273740..52275990-chr15:52310375..52312571,2	K562	blood:
23	chr15:52288929..52291542-chr15:52296453..52298744,2	MCF-7	breast:
24	chr15:52273097..52274841-chr15:52286884..52288398,2	K562	blood:
25	chr15:52263930..52266204-chr15:52279410..52281439,2	MCF-7	breast:
26	chr15:52267594..52270331-chr15:52272576..52274636,3	MCF-7	breast:
27	chr1:153642946..153643631-chr15:52311398..52311917,2	Hela-S3	cervix:
28	chr15:50646379..50648105-chr15:52310964..52313763,2	MCF-7	breast:
29	chr15:52281191..52288853-chr15:52309308..52312882,12	MCF-7	breast:
30	chr15:52262536..52264088-chr15:52296110..52298428,2	MCF-7	breast:
31	chr15:52323591..52325399-chr15:52331469..52333849,2	MCF-7	breast:
32	chr15:52308807..52313747-chr15:52329198..52338033,19	MCF-7	breast:
33	chr15:52262263..52265675-chr15:52285605..52288830,5	MCF-7	breast:
34	chr15:52317535..52326388-chr15:52327451..52335331,11	K562	blood:
35	chr15:52307141..52308923-chr15:52319754..52321972,2	K562	blood:
36	chr15:52300735..52303050-chr15:52304162..52305762,3	MCF-7	breast:
37	chr15:52267594..52270331-chr15:52272576..52274636,3	MCF-7	breast:
38	chr15:52263196..52265613-chr15:52299179..52302350,3	MCF-7	breast:
39	chr15:52308640..52315286-chr15:52329805..52332909,7	K562	blood:
40	chr15:52310288..52313422-chr15:52332456..52335210,3	K562	blood:
41	chr15:52274113..52275112-chr15:52370804..52371366,6	K562	blood:
42	chr15:52331526..52333859-chr15:52340163..52342919,2	K562	blood:
43	chr15:52248345..52251299-chr15:52257888..52259558,2	MCF-7	breast:
44	chr15:52327199..52328744-chr15:52329099..52330957,2	MCF-7	breast:
45	chr15:52277079..52289117-chr15:52304221..52314916,38	MCF-7	breast:
46	chr15:52273041..52275862-chr15:52300749..52303075,2	MCF-7	breast:
47	chr1:186344295..186345189-chr15:52311029..52311907,2	Hela-S3	cervix:
48	chr14:75745847..75746397-chr15:52311405..52311940,2	Hela-S3	cervix:
49	chr15:52259391..52261500-chr15:52261701..52265538,4	MCF-7	breast:
50	chr15:52313118..52316334-chr15:52326063..52329741,3	K562	blood:

(count:16 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MAPK6-12	chr15:52313661-52313761	NONHSAT043904
2	lnc-MAPK6-12	chr15:52319836-52320070	NONHSAT043905
3	lnc-MAPK6-12	chr15:52312119-52312229	NONHSAT043903
4	lnc-TMOD3-1	chr15:52327757-52327822	ENSG00000259398.1
5	lnc-MAPK6-12	chr15:52263674-52264103	NONHSAT043898
6	lnc-MAPK6-12	chr15:52334951-52335030	NONHSAT043902
7	lnc-TMOD3-1	chr15:52325904-52326218	ENSG00000259398.1
8	lnc-MAPK6-12	chr15:52296462-52296599	NONHSAT043896
9	lnc-MAPK6-12	chr15:52316778-52316892	NONHSAT043905
10	lnc-MAPK6-12	chr15:52296462-52296586	NONHSAT043898
11	lnc-LEO1-3	chr15:52303196-52303663	ENSG00000259438.1
12	lnc-MAPK6-12	chr15:52334951-52335030	NONHSAT043899
13	lnc-MAPK6-12	chr15:52296377-52296599	NONHSAT043899
14	lnc-MAPK6-12	chr15:52311435-52311573	NONHSAT043902
15	lnc-MAPK6-12	chr15:52296405-52296599	NONHSAT043900
16	lnc-LEO1-3	chr15:52310896-52311292	ENSG00000259438.1

No data

Variant related genes	Relation type
ENSG00000259438	TF binding region
MAPK6	TF binding region
LEO1	TF binding region
ENSG00000259398	TF binding region
ENSG00000259438	CpG island
MAPK6	CpG island
LEO1	CpG island
ENSG00000259398	CpG island
ENSG00000259712	chromatin interactions
ENSG00000259332	chromatin interactions
ENSG00000166477	chromatin interactions
ENSG00000104983	chromatin interactions
ENSG00000259178	chromatin interactions
ENSG00000108106	chromatin interactions
ENSG00000184260	chromatin interactions
ENSG00000140280	chromatin interactions
ENSG00000104093	chromatin interactions
ENSG00000259398	chromatin interactions
ENSG00000104064	chromatin interactions
ENSG00000180953	chromatin interactions
ENSG00000259802	chromatin interactions
ENSG00000176476	chromatin interactions
ENSG00000244879	chromatin interactions
ENSG00000126226	chromatin interactions
ENSG00000099385	chromatin interactions
ENSG00000259438	chromatin interactions
ENSG00000184270	chromatin interactions
ENSG00000211591	chromatin interactions
ENSG00000139842	chromatin interactions
ENSG00000091039	chromatin interactions
ENSG00000166478	chromatin interactions
ENSG00000107816	chromatin interactions
ENSG00000259577	chromatin interactions
ENSG00000143621	chromatin interactions
ENSG00000069966	chromatin interactions
ENSG00000242327	chromatin interactions
ENSG00000170345	chromatin interactions
ENSG00000145495	chromatin interactions
ENSG00000184678	chromatin interactions
ENSG00000108515	chromatin interactions
ENSG00000117174	chromatin interactions
ENSG00000140367	chromatin interactions
ENSG00000178096	chromatin interactions
ENSG00000128872	chromatin interactions
ENSG00000259709	chromatin interactions
ENSG00000115520	chromatin interactions
ENSG00000047410	chromatin interactions
ENSG00000137875	chromatin interactions
ENSG00000268403	chromatin interactions
ENSG00000158373	chromatin interactions
ENSG00000141428	chromatin interactions
ENSG00000138594	chromatin interactions
ENSG00000069956	chromatin interactions
ENSG00000207484	chromatin interactions
ENSG00000143384	chromatin interactions
ENSG00000157181	chromatin interactions

Extended variants
information (count: 3116 )
Associated
traits (count: 59 )

Variant overlapped rSNPs/rCNVs (count:3116 , 50 per page) page: 1 2 3 4 5 6 7 ... 63

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs2470615	chr15:52257100-52257101	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs554346409	chr15:52257127-52257128	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs367963739	chr15:52257135-52257136	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs527408677	chr15:52257140-52257141	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs372647876	chr15:52257200-52257201	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs142847620	chr15:52257207-52257208	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs542838368	chr15:52257218-52257219	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs560950197	chr15:52257238-52257239	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs146095246	chr15:52257245-52257246	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs200669728	chr15:52257259-52257260	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs187652625	chr15:52257274-52257275	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs76961183	chr15:52257282-52257283	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs140021137	chr15:52257284-52257285	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs79372989	chr15:52257285-52257286	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs190618373	chr15:52257332-52257333	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs574837545	chr15:52257348-52257349	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs565465221	chr15:52257368-52257369	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs529773162	chr15:52257403-52257404	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs118007431	chr15:52257458-52257459	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs143639696	chr15:52257466-52257467	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs538386773	chr15:52257469-52257470	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs556941085	chr15:52257470-52257471	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs146750025	chr15:52257510-52257511	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs183374512	chr15:52257529-52257530	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs539072135	chr15:52257537-52257538	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs554188920	chr15:52257593-52257594	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs572446330	chr15:52257666-52257667	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs140411912	chr15:52257723-52257724	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs187716404	chr15:52257725-52257726	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs571424092	chr15:52257726-52257727	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs202063298	chr15:52257760-52257761	Weak transcription Strong transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs192741771	chr15:52257810-52257811	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs149961714	chr15:52257835-52257836	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs564878160	chr15:52257839-52257840	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs563570517	chr15:52257851-52257852	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs2241503	chr15:52257874-52257875	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
37	rs2593203	chr15:52257896-52257897	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs368641630	chr15:52257911-52257912	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs374849668	chr15:52257964-52257965	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs144504049	chr15:52257996-52257997	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs200556754	chr15:52258005-52258006	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs376639956	chr15:52258059-52258060	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs111647640	chr15:52258070-52258071	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs147835501	chr15:52258105-52258106	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs141332132	chr15:52258109-52258110	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs143527162	chr15:52258110-52258111	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs368626497	chr15:52258113-52258114	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs182446553	chr15:52258114-52258115	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs151065984	chr15:52258118-52258119	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs372315793	chr15:52258119-52258120	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:59)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	21364760	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Myelofibrosis	22110671	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	23813976	CNVD

Chromatin state (count:3219 , 50 per page) page: 1 2 3 4 5 6 7 ... 65

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52179600-52259800	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:52200400-52262200	Weak transcription	Stomach Mucosa	stomach
3	chr15:52222600-52259800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:52226200-52259400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:52227400-52258400	Strong transcription	Dnd41	blood
6	chr15:52233000-52258000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:52233600-52258000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr15:52235600-52258000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:52235800-52258000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:52235800-52258600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:52235800-52259200	Strong transcription	Hela-S3	cervix
12	chr15:52236000-52258000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr15:52236000-52258600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:52236000-52258800	Strong transcription	Fetal Thymus	thymus
15	chr15:52236200-52258800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:52237000-52258400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr15:52237200-52257600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:52244400-52257400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr15:52244600-52262600	Weak transcription	Fetal Heart	heart
20	chr15:52245600-52261800	Weak transcription	Pancreas	Pancrea
21	chr15:52245600-52262600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:52245800-52258000	Weak transcription	Aorta	Aorta
23	chr15:52245800-52263000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:52245800-52263200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:52246000-52257800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:52246400-52262200	Weak transcription	NHLF	lung
27	chr15:52247000-52262400	Weak transcription	Colonic Mucosa	Colon
28	chr15:52249800-52263000	Weak transcription	Psoas Muscle	Psoas
29	chr15:52250400-52258000	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:52250600-52258000	Strong transcription	Primary hematopoietic stem cells	blood
31	chr15:52252200-52258800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr15:52252800-52257800	Weak transcription	HUVEC	blood vessel
33	chr15:52253200-52257200	Weak transcription	NH-A	brain
34	chr15:52253200-52257600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:52253200-52259600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr15:52253200-52259800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:52253200-52262400	Weak transcription	Fetal Brain Male	brain
38	chr15:52253200-52262800	Weak transcription	HSMMtube	muscle
39	chr15:52253200-52263000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:52253400-52259600	Weak transcription	Brain Angular Gyrus	brain
41	chr15:52253400-52262400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:52253400-52262400	Weak transcription	Esophagus	oesophagus
43	chr15:52253600-52263000	Weak transcription	Right Ventricle	heart
44	chr15:52253800-52258000	Weak transcription	Brain Substantia Nigra	brain
45	chr15:52253800-52261800	Weak transcription	Small Intestine	intestine
46	chr15:52253800-52262800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr15:52253800-52263200	Weak transcription	Gastric	stomach
48	chr15:52254000-52259200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr15:52254000-52259600	Weak transcription	Brain Anterior Caudate	brain
50	chr15:52254200-52259400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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