Variant report

Variant	nsv1047991
Chromosome Location	chr13:65982529-66931617
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3633)
CpG islands
(count:611)
Chromatin interactive
region (count:43)
LncRNA
region (count:27)
Mature miRNA
region (count: 3)
miRNA target
sites (count:3)

(count:3633 , 50 per page) page: 1 2 3 4 5 6 7 ... 73

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr13:66651230-66651680	K562	blood:	n/a	n/a
2	ARID3A	chr13:66648258-66648447	K562	blood:	n/a	n/a
3	ARID3A	chr13:66650602-66650906	K562	blood:	n/a	n/a
4	ARID3A	chr13:66643768-66644097	K562	blood:	n/a	n/a
5	ARID3A	chr13:66784968-66784973	HepG2	liver:	n/a	n/a
6	ARID3A	chr13:66886857-66887028	HepG2	liver:	n/a	n/a
7	ARID3A	chr13:66713473-66713809	HepG2	liver:	n/a	n/a
8	ATF1	chr13:66650593-66650896	K562	blood:	n/a	n/a
9	ATF1	chr13:66035822-66036144	K562	blood:	n/a	n/a
10	ATF1	chr13:66648256-66648525	K562	blood:	n/a	n/a
11	ATF1	chr13:66643737-66644023	K562	blood:	n/a	n/a
12	ATF2	chr13:66712423-66712799	GM12878	blood:	n/a	n/a
13	ATF2	chr13:66798630-66799137	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF3	chr13:66886740-66887227	A549	lung:	n/a	n/a
15	BATF	chr13:66712420-66712936	GM12878	blood:	n/a	n/a
16	BATF	chr13:66080137-66080390	GM12878	blood:	n/a	n/a
17	BATF	chr13:66041811-66041993	GM12878	blood:	n/a	chr13:66041940-66041951
18	BATF	chr13:66712465-66712951	GM12878	blood:	n/a	n/a
19	BATF	chr13:65988370-65988595	GM12878	blood:	n/a	n/a
20	BATF	chr13:66702801-66703238	GM12878	blood:	n/a	n/a
21	BCL11A	chr13:66798709-66799125	H1-hESC	embryonic stem cell:	n/a	n/a
22	BCL11A	chr13:66712457-66712949	GM12878	blood:	n/a	chr13:66712844-66712853
23	BCL11A	chr13:66712423-66713013	GM12878	blood:	n/a	chr13:66712844-66712853
24	BCL11A	chr13:66702875-66703088	GM12878	blood:	n/a	n/a
25	BCL11A	chr13:66798756-66799093	H1-hESC	embryonic stem cell:	n/a	n/a
26	BCL11A	chr13:66702751-66703109	GM12878	blood:	n/a	n/a
27	BCL3	chr13:66886608-66887994	A549	lung:	n/a	n/a
28	BCL3	chr13:66886752-66887345	A549	lung:	n/a	n/a
29	BCLAF1	chr13:66712465-66712857	GM12878	blood:	n/a	chr13:66712844-66712853
30	BHLHE40	chr13:66212820-66213067	GM12878	blood:	n/a	n/a
31	BHLHE40	chr13:66739043-66739104	K562	blood:	n/a	n/a
32	BHLHE40	chr13:66902776-66902779	K562	blood:	n/a	n/a
33	BHLHE40	chr13:66712457-66712998	GM12878	blood:	n/a	n/a
34	BHLHE40	chr13:66917482-66917943	K562	blood:	n/a	n/a
35	BHLHE40	chr13:66648396-66648557	K562	blood:	n/a	n/a
36	BRCA1	chr13:66712793-66712993	GM12878	blood:	n/a	n/a
37	BRCA1	chr13:66035765-66036027	Hela-S3	cervix:	n/a	n/a
38	BRCA1	chr13:66878245-66878246	Hela-S3	cervix:	n/a	n/a
39	CBX3	chr13:66784784-66785224	HCT-116	colon:	n/a	n/a
40	CBX3	chr13:66212653-66213113	HCT-116	colon:	n/a	n/a
41	CBX3	chr13:66784811-66785347	HCT-116	colon:	n/a	n/a
42	CBX3	chr13:66861033-66861253	K562	blood:	n/a	n/a
43	CBX3	chr13:66643667-66644035	K562	blood:	n/a	n/a
44	CCNT2	chr13:66589547-66589747	K562	blood:	n/a	n/a
45	CCNT2	chr13:66617039-66617239	K562	blood:	n/a	n/a
46	CEBPB	chr13:66252032-66252574	HCT-116	colon:	n/a	n/a
47	CEBPB	chr13:66485897-66486276	IMR90	lung:	n/a	chr13:66486079-66486092 chr13:66486081-66486090 chr13:66486081-66486090 chr13:66486079-66486092 chr13:66486081-66486092 chr13:66486079-66486090 chr13:66486081-66486090 chr13:66486081-66486090
48	CEBPB	chr13:66035754-66036255	Hela-S3	cervix:	n/a	n/a
49	CEBPB	chr13:66612357-66612666	MCF-7	breast:	n/a	n/a
50	CEBPB	chr13:66269557-66269900	IMR90	lung:	n/a	chr13:66269714-66269727 chr13:66269716-66269727 chr13:66269714-66269725

(count:611 , 50 per page) page: 1 2 3 4 5 6 7 ... 13

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr13:66607275-66607325	Hela-S3	cervix:	n/a
2	chr13:66607275-66607325	Hela-S3	cervix:	n/a
3	chr13:66583583-66583633	NH-A	brain:	n/a
4	chr13:66878738-66878788	HepG2	liver:	n/a
5	chr13:66322551-66322601	HRE	kidney:	n/a
6	chr13:66583686-66583736	BE2_C	brain:	n/a
7	chr13:66156848-66156898	HEEpiC	esophagus:	n/a
8	chr13:66929165-66929215	HCM	heart:	n/a
9	chr13:66607275-66607325	NH-A	brain:	n/a
10	chr13:66252177-66252227	HEEpiC	esophagus:	n/a
11	chr13:66322551-66322601	HEEpiC	esophagus:	n/a
12	chr13:66322551-66322601	AG09309	skin:	n/a
13	chr13:66607275-66607325	PFSK-1	brain:	n/a
14	chr13:66322551-66322601	AG04450	lung:	fetal
15	chr13:66156848-66156898	Hepatocyte	liver:	n/a
16	chr13:66252177-66252227	H1-hESC	embryonic stem cell:	embryo
17	chr13:66607275-66607325	SK-N-SH	brain:	n/a
18	chr13:66919912-66919962	HNPCEpiC	eye:	n/a
19	chr13:66322551-66322601	ProgFib	skin:	n/a
20	chr13:66878738-66878788	NHDF-neo	bronchial:	n/a
21	chr13:66501111-66501161	H1-hESC	embryonic stem cell:	embryo
22	chr13:66252177-66252227	Hepatocyte	liver:	n/a
23	chr13:66919912-66919962	NHBE	bronchial:	n/a
24	chr13:66322551-66322601	HIPEpiC	eye:	n/a
25	chr13:66929165-66929215	Hela-S3	cervix:	n/a
26	chr13:66583583-66583633	HUVEC	blood vessel:	n/a
27	chr13:66156848-66156898	NB4	blood:	n/a
28	chr13:66583686-66583736	GM12892	blood:	n/a
29	chr13:66252177-66252227	RPTEC	kidney:	n/a
30	chr13:66607275-66607325	H1-hESC	embryonic stem cell:	embryo
31	chr13:66322551-66322601	HUVEC	blood vessel:	n/a
32	chr13:66252177-66252227	HCT-116	colon:	n/a
33	chr13:66929165-66929215	SK-N-SH	brain:	n/a
34	chr13:66607275-66607325	NB4	blood:	n/a
35	chr13:66583583-66583633	PrEC	prostate:	n/a
36	chr13:66878738-66878788	GM06990	blood:	n/a
37	chr13:66929165-66929215	MCF-7	breast:	n/a
38	chr13:66156848-66156898	H1-hESC	embryonic stem cell:	embryo
39	chr13:66322551-66322601	AG10803	skin:	n/a
40	chr13:66322551-66322601	HCF	heart:	n/a
41	chr13:66501111-66501161	NHDF-neo	bronchial:	n/a
42	chr13:66878738-66878788	HEEpiC	esophagus:	n/a
43	chr13:66583583-66583633	BJ	skin:	n/a
44	chr13:66252177-66252227	HNPCEpiC	eye:	n/a
45	chr13:66583583-66583633	HNPCEpiC	eye:	n/a
46	chr13:66878738-66878788	U87	brain:	n/a
47	chr13:66583686-66583736	HepG2	liver:	n/a
48	chr13:66607275-66607325	AG04449	skin:	fetal
49	chr13:66252177-66252227	MCF-7	breast:	n/a
50	chr13:66919912-66919962	T-47D	breast:	n/a

(count:43 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:66296680..66298971-chr13:66300615..66302352,2	MCF-7	breast:
2	chr13:66358245..66360880-chr16:71346372..71347872,2	MCF-7	breast:
3	chr13:66423397..66425712-chr13:66435469..66437961,2	K562	blood:
4	chr13:66500564..66501578-chr13:66540848..66541721,3	MCF-7	breast:
5	chr13:66725373..66727381-chr13:66728791..66730521,2	K562	blood:
6	chr13:66206471..66208391-chr13:66217892..66220664,2	K562	blood:
7	chr13:66557440..66557967-chr13:82054818..82055319,2	MCF-7	breast:
8	chr13:66230680..66231446-chr13:66540896..66541772,3	MCF-7	breast:
9	chr13:65020257..65021157-chr13:66212532..66213123,2	MCF-7	breast:
10	chr13:66824109..66824810-chr16:71735977..71736631,2	MCF-7	breast:
11	chr13:66901663..66903255-chr13:66906195..66907818,2	K562	blood:
12	chr13:66909684..66911530-chr13:66916300..66919201,2	K562	blood:
13	chr13:66014665..66017459-chr13:66017619..66020223,2	MCF-7	breast:
14	chr13:66879908..66881972-chr13:66902872..66904425,2	K562	blood:
15	chr13:66782802..66785217-chr13:66787154..66788780,2	MCF-7	breast:
16	chr13:66622814..66624893-chr13:66627297..66630041,2	K562	blood:
17	chr13:66500564..66501578-chr13:66540848..66541721,3	MCF-7	breast:
18	chr13:66423397..66425712-chr13:66435469..66437961,2	K562	blood:
19	chr13:66582815..66585533-chr13:66632919..66634778,2	K562	blood:
20	chr13:66677587..66680337-chr13:66682446..66685267,2	K562	blood:
21	chr13:66606276..66609107-chr13:66609295..66610970,2	MCF-7	breast:
22	chr13:66206471..66208391-chr13:66217892..66220664,2	K562	blood:
23	chr13:66918574..66921439-chr13:66945401..66948264,2	MCF-7	breast:
24	chr13:66046639..66047382-chr3:13541452..13542407,2	MCF-7	breast:
25	chr13:66622814..66624893-chr13:66627297..66630041,2	K562	blood:
26	chr13:66230680..66231446-chr13:66540896..66541772,3	MCF-7	breast:
27	chr13:66901663..66903255-chr13:66906195..66907818,2	K562	blood:
28	chr13:66014665..66017459-chr13:66017619..66020223,2	MCF-7	breast:
29	chr13:66909684..66911530-chr13:66916300..66919201,2	K562	blood:
30	chr13:66725373..66727381-chr13:66728791..66730521,2	K562	blood:
31	chr13:66377468..66378968-chr8:43092929..43094908,2	MCF-7	breast:
32	chr13:65045929..65046727-chr13:66212514..66213321,2	MCF-7	breast:
33	chr13:65802985..65805270-chr13:66070535..66073117,2	K562	blood:
34	chr13:66296680..66298971-chr13:66300615..66302352,2	MCF-7	breast:
35	chr13:66363582..66364363-chr21:32786060..32786817,2	MCF-7	breast:
36	chr13:66677587..66680337-chr13:66682446..66685267,2	K562	blood:
37	chr13:66355137..66357196-chr13:66362374..66364366,2	K562	blood:
38	chr1:106318966..106319467-chr13:66093606..66094106,2	NB4	blood:
39	chr13:66879908..66881972-chr13:66902872..66904425,2	K562	blood:
40	chr12:28240626..28241152-chr13:66662383..66662898,2	MCF-7	breast:
41	chr13:66582815..66585533-chr13:66632919..66634778,2	K562	blood:
42	chr13:66606276..66609107-chr13:66609295..66610970,2	MCF-7	breast:
43	chr13:66782802..66785217-chr13:66787154..66788780,2	MCF-7	breast:

(count:27 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL445989.1-26	chr13:66843129-66844590	NONHSAT034207
2	lnc-PCDH9-7	chr13:66035510-66035584	NONHSAT034194
3	lnc-PCDH9-1	chr13:66805874-66806206	ENSG00000250631
4	lnc-PCDH9-7	chr13:66017513-66017582	NONHSAT034194
5	lnc-AL445989.1-8	chr13:66449839-66449901	NONHSAT034197
6	lnc-PCDH9-6	chr13:66410063-66410464	NONHSAT034195
7	lnc-AL445989.1-13	chr13:66878003-66878146	ENSG00000234527.1
8	lnc-AL445989.1-8	chr13:66451989-66452351	ENSG00000234767
9	lnc-AL445989.1-26	chr13:66851684-66852109	NONHSAT034208
10	lnc-AL445989.1-11	chr13:66628093-66628119	XLOC_010416
11	lnc-AL445989.1-9	chr13:66503637-66503853	XLOC_010414
12	lnc-AL445989.1-9	chr13:66510419-66510480	XLOC_010414
13	lnc-PCDH9-1	chr13:66715500-66715905	ENSG00000250631
14	lnc-PCDH9-7	chr13:66015947-66016044	NONHSAT034194
15	lnc-AL445989.1-10	chr13:66515195-66515334	XLOC_010415
16	lnc-AL445989.1-26	chr13:66846998-66847098	NONHSAT034208
17	lnc-AL445989.1-10	chr13:66546596-66551943	XLOC_010415
18	lnc-AL445989.1-13	chr13:66897306-66897693	ENSG00000234527.1
19	lnc-AL445989.1-8	chr13:66449839-66449901	ENSG00000234767
20	lnc-AL445989.1-11	chr13:66569686-66569896	XLOC_010416
21	lnc-PCDH9-1	chr13:66718649-66718753	ENSG00000250631
22	lnc-AL445989.1-8	chr13:66451989-66452351	NONHSAT034197
23	lnc-AL445989.1-8	chr13:66440306-66440375	ENSG00000234767
24	lnc-AL445989.1-8	chr13:66440195-66440400	NONHSAT034197
25	lnc-PCDH9-6	chr13:66430425-66430559	NONHSAT034195
26	lnc-AL445989.1-26	chr13:66844520-66844603	NONHSAT034208
27	lnc-AL445989.1-11	chr13:66569993-66570140	XLOC_010416

miRNA name	Chromosome Location	mirBase accession
hsa-miR-4704-5p	chr13:66792391-66792412	MIMAT0019803
hsa-miR-548x-3p	chr13:66540484-66540503	MIMAT0015081
hsa-miR-4704-3p	chr13:66792428-66792449	MIMAT0019804

(count:3 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location
1	PCDH9	hsa-miR-155-5p	chr13:66878327-66878320
2	PCDH9	hsa-miR-155-5p	chr13:66878321-66878343
3	PCDH9	hsa-miR-155-5p	chr13:66877756-66877779

Variant related genes	Relation type
MIR4704	TF binding region
MIR548X2	TF binding region
TRIM60P19	TF binding region
HNRNPA3P5	TF binding region
PCDH9-AS1	TF binding region
ENSG00000221685	TF binding region
LINC01052	TF binding region
MIR4704	CpG island
MIR548X2	CpG island
TRIM60P19	CpG island
HNRNPA3P5	CpG island
PCDH9-AS1	CpG island
ENSG00000221685	CpG island
LINC01052	CpG island
ENSG00000236565	chromatin interactions
INO80D	miRNA target sites

Extended variants
information (count: 15860 )
Associated
traits (count: 107 )

Variant overlapped rSNPs/rCNVs (count:15860 , 50 per page) page: 1 2 3 4 5 6 7 ... 318

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs572383813	chr13:65990810-65990811	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs34752424	chr13:65990818-65990819	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs397851936	chr13:65990820-65990821	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs567879150	chr13:65990837-65990838	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs541212486	chr13:65990886-65990887	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs183233810	chr13:65990977-65990978	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs188688185	chr13:65990984-65990985	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs371556749	chr13:65990985-65990986	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs550399590	chr13:65990992-65990993	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs193000131	chr13:65991038-65991039	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs540057864	chr13:65991067-65991068	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs74090551	chr13:65991130-65991131	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
13	rs148466954	chr13:65991138-65991139	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs183189048	chr13:65991160-65991161	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs188127027	chr13:65991161-65991162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs115902096	chr13:65991196-65991197	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs570533266	chr13:65991197-65991198	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs564812783	chr13:65991203-65991204	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs74090552	chr13:65991272-65991273	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs34660614	chr13:65991319-65991320	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs532191155	chr13:65991410-65991411	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs368226582	chr13:65991427-65991428	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs555956859	chr13:65991446-65991447	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs371373581	chr13:65991448-65991449	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs535005398	chr13:65991473-65991474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs575817281	chr13:65991553-65991554	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs535389388	chr13:65991572-65991573	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs553588591	chr13:65991578-65991579	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs578188164	chr13:65991616-65991617	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs555632107	chr13:65991675-65991676	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs146472616	chr13:65991680-65991681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs376624037	chr13:65991706-65991707	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs541423456	chr13:65991785-65991786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs191154875	chr13:65991858-65991859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs578157829	chr13:65991862-65991863	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs9598973	chr13:65991906-65991907	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs563904619	chr13:65991920-65991921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs529485081	chr13:65991927-65991928	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs183695924	chr13:65991928-65991929	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs560007496	chr13:65991943-65991944	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs528735181	chr13:65991960-65991961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs189145693	chr13:65991987-65991988	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs539183584	chr13:65992019-65992020	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs140928012	chr13:65992050-65992051	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs60122996	chr13:65992059-65992060	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
46	rs73510678	chr13:65992131-65992132	Enhancers Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs576188952	chr13:65992142-65992143	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs143235751	chr13:65992168-65992169	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565965865	chr13:65992177-65992178	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs534584371	chr13:65992243-65992244	Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:107)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
HIV/AIDS	22032296	CNVD
Prostate cancer	16705090	CNVD
High-proliferative meningiomas	17937814	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Cancer	20164919	CNVD
Autism	22495311	CNVD
Chordoma	21602918	CNVD
Bladder cancer	21949216	CNVD
Acute myeloid leukemia	16864856	CNVD
Burkitt''s lymphoma	18698080	CNVD
Cancer	21637783	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	21518781	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Colorectal cancer	20709793	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Ovarian cancer	20844748	CNVD
Colorectal cancer	19359472	CNVD
Intracranial aneurysm	19064780	CNVD
Breast cancer	19287154	CNVD
Acute myeloid leukemia	18379011	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Multiple myeloma	17077331	CNVD
Ependymoma	16718352	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Colorectal cancer	16272173	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Squamous cell cancer	20885788	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Thyroid cancer	19087340	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	17133270	CNVD
Myoepithelioma	18604193	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Paraganglioma	21461997	CNVD
Pheochromocytoma	21461997	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Prostate cancer	17245344	CNVD
Prostate cancer	18632612	CNVD
Colorectal cancer	21586687	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Retinoblastoma	19183342	CNVD
Developmental delay	21147756	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Merkel cell carcinoma	19020549	CNVD
Basal cell lymphoma	17053054	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
lymphocytic leukemia	21291569	CNVD
Multiple myeloma	17550852	CNVD
Breast cancer	21858162	CNVD
Glioblastoma multiforme	21922591	CNVD
Metanephric adenoma	20802469	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Gastric cancer	17908304	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	17603634	CNVD
Cancer	21183584	CNVD
Breast cancer	17393978	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Liposarcoma	21253554	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Colorectal cancer	16774939	CNVD
Adenoid cystic carcinoma	17372589	CNVD
abnormal development	18461090	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Prostate cancer	16461572	CNVD
Congenital anomalies of the kidney and urinary tract	18316590	CNVD
Intellectual disability	21811512	CNVD
Colorectal cancer	21645411	CNVD
Melanoma	20877625	CNVD
T-cell lymphomas	22341440	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Bipolar disorder	19114987	CNVD
Schizophrenia	20967226	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Schizophrenia	23813976	CNVD
Prostate cancer	22341455	CNVD

Chromatin state (count:1395 , 50 per page) page: 1 2 3 4 5 6 7 ... 28

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:65990800-65991200	Enhancers	Fetal Lung	lung
2	chr13:65991200-65992200	Weak transcription	Fetal Lung	lung
3	chr13:65992000-65992400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr13:65992000-65993400	Enhancers	Fetal Kidney	kidney
5	chr13:65992200-65992400	Enhancers	Fetal Lung	lung
6	chr13:65992200-65992600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr13:65992600-65993800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:65992800-65993800	Enhancers	Brain Germinal Matrix	brain
9	chr13:65993800-65994200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:65993800-65994400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr13:66009000-66010400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
12	chr13:66009400-66010200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
13	chr13:66009600-66010200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:66009800-66010200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr13:66010200-66015800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr13:66010200-66031600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:66015800-66016000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr13:66016000-66018600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr13:66018800-66019000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr13:66028200-66028800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr13:66031600-66031800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:66031800-66035800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:66033400-66034000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr13:66033400-66036000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr13:66033600-66034000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr13:66033600-66036200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr13:66033800-66034800	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr13:66033800-66035800	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr13:66034000-66034200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr13:66034000-66034200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr13:66034000-66034400	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr13:66034200-66034400	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr13:66034400-66034600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
34	chr13:66034400-66034800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr13:66034400-66035600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr13:66034400-66036000	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr13:66034600-66036200	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr13:66034800-66036000	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr13:66035400-66036200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr13:66035600-66036000	Enhancers	H1 Cell Line	embryonic stem cell
41	chr13:66035600-66036000	Enhancers	Adipose Nuclei	Adipose
42	chr13:66035600-66036200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr13:66035600-66036200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr13:66035600-66036400	Enhancers	H9 Cell Line	embryonic stem cell
45	chr13:66035600-66036400	Enhancers	Hela-S3	cervix
46	chr13:66035800-66036200	Enhancers	Muscle Satellite Cultured Cells	--
47	chr13:66035800-66036400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr13:66041600-66042400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr13:66041600-66044400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr13:66041800-66043800	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links