Variant report

Variant	nsv1048327
Chromosome Location	chr9:115383253-115589646
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3489)
CpG islands
(count:856)
Chromatin interactive
region (count:229)
LncRNA
region (count:11)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3489 , 50 per page) page: 1 2 3 4 5 6 7 ... 70

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr9:115512431-115512988	HepG2	liver:	n/a	n/a
2	ARID3A	chr9:115512832-115512868	K562	blood:	n/a	n/a
3	ARID3A	chr9:115480786-115481091	HepG2	liver:	n/a	n/a
4	ARID3A	chr9:115480303-115480518	K562	blood:	n/a	n/a
5	ARID3A	chr9:115480237-115480501	HepG2	liver:	n/a	n/a
6	ARID3A	chr9:115479963-115479990	K562	blood:	n/a	n/a
7	ARID3A	chr9:115527085-115527557	HepG2	liver:	n/a	n/a
8	ARID3A	chr9:115494056-115494755	HepG2	liver:	n/a	n/a
9	ARID3A	chr9:115526787-115526979	K562	blood:	n/a	n/a
10	ARID3A	chr9:115509251-115509790	HepG2	liver:	n/a	n/a
11	ATF1	chr9:115479899-115480664	K562	blood:	n/a	n/a
12	ATF1	chr9:115546849-115547018	K562	blood:	n/a	n/a
13	ATF1	chr9:115492920-115493063	K562	blood:	n/a	n/a
14	ATF2	chr9:115546485-115546980	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr9:115479964-115480574	H1-hESC	embryonic stem cell:	n/a	n/a
16	ATF2	chr9:115571553-115572322	GM12878	blood:	n/a	n/a
17	ATF2	chr9:115461473-115461858	GM12878	blood:	n/a	n/a
18	ATF2	chr9:115480059-115480571	H1-hESC	embryonic stem cell:	n/a	n/a
19	ATF2	chr9:115533877-115534620	GM12878	blood:	n/a	n/a
20	ATF2	chr9:115534041-115534389	GM12878	blood:	n/a	n/a
21	ATF2	chr9:115479969-115480608	GM12878	blood:	n/a	n/a
22	ATF2	chr9:115546557-115547024	H1-hESC	embryonic stem cell:	n/a	n/a
23	ATF2	chr9:115461429-115461926	GM12878	blood:	n/a	n/a
24	ATF2	chr9:115571491-115572271	GM12878	blood:	n/a	n/a
25	ATF2	chr9:115536387-115537342	GM12878	blood:	n/a	n/a
26	ATF3	chr9:115512764-115513021	K562	blood:	n/a	n/a
27	ATF3	chr9:115513811-115514038	K562	blood:	n/a	chr9:115513959-115513968
28	BACH1	chr9:115480689-115480847	K562	blood:	n/a	n/a
29	BACH1	chr9:115391691-115391696	H1-hESC	embryonic stem cell:	n/a	n/a
30	BACH1	chr9:115555648-115555803	H1-hESC	embryonic stem cell:	n/a	n/a
31	BACH1	chr9:115480800-115481000	H1-hESC	embryonic stem cell:	n/a	n/a
32	BACH1	chr9:115383915-115383962	H1-hESC	embryonic stem cell:	n/a	n/a
33	BACH1	chr9:115513425-115513999	H1-hESC	embryonic stem cell:	n/a	n/a
34	BATF	chr9:115477422-115477655	GM12878	blood:	n/a	n/a
35	BATF	chr9:115571549-115572196	GM12878	blood:	n/a	chr9:115571860-115571871
36	BATF	chr9:115481594-115481937	GM12878	blood:	n/a	n/a
37	BATF	chr9:115555592-115555842	GM12878	blood:	n/a	n/a
38	BATF	chr9:115571596-115572164	GM12878	blood:	n/a	chr9:115571860-115571871
39	BATF	chr9:115450305-115450695	GM12878	blood:	n/a	chr9:115450534-115450545 chr9:115450535-115450545
40	BATF	chr9:115477441-115477621	GM12878	blood:	n/a	n/a
41	BATF	chr9:115481521-115481962	GM12878	blood:	n/a	n/a
42	BCL11A	chr9:115571550-115572162	GM12878	blood:	n/a	n/a
43	BCL11A	chr9:115571502-115572209	GM12878	blood:	n/a	n/a
44	BCL3	chr9:115571588-115572096	GM12878	blood:	n/a	n/a
45	BCL3	chr9:115461526-115461832	GM12878	blood:	n/a	n/a
46	BCLAF1	chr9:115461422-115462143	GM12878	blood:	n/a	n/a
47	BCLAF1	chr9:115555367-115555922	GM12878	blood:	n/a	n/a
48	BCLAF1	chr9:115479865-115480402	GM12878	blood:	n/a	n/a
49	BCLAF1	chr9:115571542-115572234	GM12878	blood:	n/a	n/a
50	BCLAF1	chr9:115571497-115572306	GM12878	blood:	n/a	n/a

(count:856 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:115513525-115513575	NB4	blood:	n/a
2	chr9:115513756-115513806	SK-N-MC	brain:	n/a
3	chr9:115513525-115513575	NB4	blood:	n/a
4	chr9:115513756-115513806	SK-N-MC	brain:	n/a
5	chr9:115480625-115480675	GM12892	blood:	n/a
6	chr9:115480324-115480374	GM06990	blood:	n/a
7	chr9:115509770-115509820	K562	blood:	n/a
8	chr9:115480630-115480680	IMR90	lung:	fetal
9	chr9:115512530-115512580	A549	lung:	n/a
10	chr9:115480539-115480589	SKMC	muscle:	n/a
11	chr9:115480625-115480675	ECC-1	luminal epithelium:	n/a
12	chr9:115513820-115513870	GM12878	blood:	n/a
13	chr9:115513525-115513575	HCF	heart:	n/a
14	chr9:115509770-115509820	AoSMC	blood vessel:	n/a
15	chr9:115509770-115509820	MCF10A-Er-Src	breast:	n/a
16	chr9:115480324-115480374	HIPEpiC	eye:	n/a
17	chr9:115512612-115512662	HCT-116	colon:	n/a
18	chr9:115480625-115480675	Caco-2	colon:	n/a
19	chr9:115513756-115513806	AG04449	skin:	fetal
20	chr9:115512612-115512662	HRE	kidney:	n/a
21	chr9:115513482-115513532	BE2_C	brain:	n/a
22	chr9:115480539-115480589	HCF	heart:	n/a
23	chr9:115513056-115513106	NH-A	brain:	n/a
24	chr9:115480324-115480374	H1-hESC	embryonic stem cell:	embryo
25	chr9:115481039-115481089	HAEpiC	amniotic membrane:	n/a
26	chr9:115513482-115513532	PANC-1	pancreas:	n/a
27	chr9:115480060-115480110	HCPEpiC	choroid plexus:	n/a
28	chr9:115513756-115513806	HUVEC	blood vessel:	n/a
29	chr9:115512530-115512580	AG09309	skin:	n/a
30	chr9:115512612-115512662	HMEC	breast:	n/a
31	chr9:115513525-115513575	HUVEC	blood vessel:	n/a
32	chr9:115512530-115512580	IMR90	lung:	fetal
33	chr9:115513525-115513575	HRPEpiC	eye:	n/a
34	chr9:115513525-115513575	SK-N-SH_RA	brain:	n/a
35	chr9:115513525-115513575	HCT-116	colon:	n/a
36	chr9:115509770-115509820	Jurkat	blood:	n/a
37	chr9:115480630-115480680	NHBE	bronchial:	n/a
38	chr9:115513820-115513870	Jurkat	blood:	n/a
39	chr9:115512612-115512662	HRCEpiC	kidney:	n/a
40	chr9:115509770-115509820	HepG2	liver:	n/a
41	chr9:115509770-115509820	GM12878	blood:	n/a
42	chr9:115480324-115480374	CMK	blood:	n/a
43	chr9:115480539-115480589	HCM	heart:	n/a
44	chr9:115480630-115480680	AG04450	lung:	fetal
45	chr9:115509770-115509820	HCF	heart:	n/a
46	chr9:115480060-115480110	A549	lung:	n/a
47	chr9:115480324-115480374	ovcar-3	ovarian:	n/a
48	chr9:115513756-115513806	HNPCEpiC	eye:	n/a
49	chr9:115513482-115513532	ovcar-3	ovarian:	n/a
50	chr9:115480324-115480374	HCPEpiC	choroid plexus:	n/a

(count:229 , 50 per page) page: 1 2 3 4 5

No.	Distal block	Cell Line	Cell type
1	chr9:115379161..115382087-chr9:115394727..115397180,2	K562	blood:
2	chr9:115503663..115506191-chr9:115515083..115517470,2	K562	blood:
3	chr9:115505313..115506170-chr9:115581939..115582872,6	MCF-7	breast:
4	chr9:115586477..115588128-chr9:115588617..115590666,2	MCF-7	breast:
5	chr9:115425089..115427194-chr9:115429213..115432033,2	K562	blood:
6	chr9:115503663..115506191-chr9:115515083..115517470,2	K562	blood:
7	chr9:115235092..115237289-chr9:115391747..115394330,2	K562	blood:
8	chr9:115498256..115499821-chr9:115502701..115504658,2	MCF-7	breast:
9	chr9:115456646..115458575-chr9:115460716..115463371,2	MCF-7	breast:
10	chr9:115545740..115547705-chr9:115549522..115552424,3	K562	blood:
11	chr9:115568138..115570765-chr9:115571944..115575616,3	MCF-7	breast:
12	chr9:115566617..115568493-chr9:115570718..115573933,3	K562	blood:
13	chr9:115469754..115472490-chr9:115478111..115481463,3	K562	blood:
14	chr9:115248674..115250547-chr9:115381858..115383773,2	K562	blood:
15	chr9:115466699..115468556-chr9:115477154..115479875,2	K562	blood:
16	chr9:115537609..115539652-chr9:115540859..115543192,2	K562	blood:
17	chr9:115511729..115513827-chr9:115524619..115527032,2	K562	blood:
18	chr9:115512711..115515246-chr9:115645739..115647908,2	MCF-7	breast:
19	chr1:171750400..171751284-chr9:115512246..115512858,2	Hela-S3	cervix:
20	chr9:115446137..115448834-chr9:115451876..115453700,2	K562	blood:
21	chr9:115471879..115473939-chr9:115578770..115581300,2	MCF-7	breast:
22	chr9:115565460..115568341-chr9:115568700..115570833,2	MCF-7	breast:
23	chr9:115425694..115427398-chr9:115429129..115432033,2	K562	blood:
24	chr9:115480360..115482019-chr9:115485425..115488310,2	K562	blood:
25	chr9:115496362..115499450-chr9:115509483..115512826,3	K562	blood:
26	chr9:115542323..115543892-chr9:115545474..115547035,2	K562	blood:
27	chr9:115247539..115250274-chr9:115478530..115480518,2	K562	blood:
28	chr9:115578144..115579912-chr9:115585850..115587895,2	K562	blood:
29	chr1:160651034..160651578-chr9:115581816..115582408,2	K562	blood:
30	chr9:115500108..115502596-chr9:115512247..115514612,3	MCF-7	breast:
31	chr9:115439423..115442262-chr9:115442382..115444578,2	MCF-7	breast:
32	chr9:115449599..115451431-chr9:115473540..115475115,2	K562	blood:
33	chr9:115565460..115568341-chr9:115568700..115570833,2	MCF-7	breast:
34	chr9:115478793..115482013-chr9:115511686..115514694,6	MCF-7	breast:
35	chr9:115496362..115497969-chr9:115509483..115511853,2	K562	blood:
36	chr9:115477963..115483003-chr9:115511350..115514480,8	K562	blood:
37	chr9:115485448..115488278-chr9:115512375..115514169,2	MCF-7	breast:
38	chr9:115374076..115376330-chr9:115394723..115396428,2	K562	blood:
39	chr9:115533346..115535894-chr9:115545369..115547662,2	MCF-7	breast:
40	chr9:115494981..115496599-chr9:115509076..115511385,2	MCF-7	breast:
41	chr9:115513040..115515459-chr9:115588123..115591278,3	MCF-7	breast:
42	chr9:115478146..115483068-chr9:115509233..115514262,7	K562	blood:
43	chr9:115478793..115482013-chr9:115511686..115514694,6	MCF-7	breast:
44	chr9:115542323..115543892-chr9:115545474..115547035,2	K562	blood:
45	chr9:115318942..115321927-chr9:115404197..115406389,2	MCF-7	breast:
46	chr9:115554429..115557322-chr9:115571170..115574854,4	MCF-7	breast:
47	chr9:115478846..115480456-chr9:115577963..115579856,2	MCF-7	breast:
48	chr9:115421290..115425519-chr9:115428023..115431613,4	K562	blood:
49	chr9:115533346..115535894-chr9:115545369..115547662,2	MCF-7	breast:
50	chr9:115549226..115551545-chr9:115577690..115579571,2	MCF-7	breast:

(count:11 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C9orf80-1	chr9:115512686-115512736	XLOC_007830
2	lnc-C9orf80-1	chr9:115505051-115505514	XLOC_007830
3	lnc-KIAA1958-1	chr9:115484007-115484956	NONHSAT134022
4	lnc-SLC46A2-4	chr9:115478741-115478821	NONHSAT134023
5	lnc-SLC46A2-4	chr9:115480267-115480397	NONHSAT134023
6	lnc-KIAA1958-1	chr9:115454118-115454181	NONHSAT134022
7	lnc-KIAA1958-1	chr9:115453057-115453265	NONHSAT134022
8	lnc-C9orf80-1	chr9:115511360-115512795	XLOC_007830
9	lnc-SLC46A2-4	chr9:115456314-115456513	NONHSAT134023
10	lnc-SNX30-2	chr9:115390750-115391983	NONHSAT134020
11	lnc-C9orf80-1	chr9:115511182-115511550	XLOC_007830

No data

Variant related genes	Relation type
ENSG00000226609	TF binding region
INIP	TF binding region
SNX30	TF binding region
ENSG00000226609	CpG island
INIP	CpG island
SNX30	CpG island
ENSG00000101144	chromatin interactions
ENSG00000230185	chromatin interactions
ENSG00000119471	chromatin interactions
ENSG00000173473	chromatin interactions
ENSG00000271631	chromatin interactions
ENSG00000165185	chromatin interactions
ENSG00000150760	chromatin interactions
ENSG00000010165	chromatin interactions
ENSG00000110925	chromatin interactions
ENSG00000226609	chromatin interactions
ENSG00000148158	chromatin interactions
ENSG00000049239	chromatin interactions
ENSG00000119314	chromatin interactions
ENSG00000148153	chromatin interactions
SETD8	miRNA target sites

Extended variants
information (count: 7616 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:7616 , 50 per page) page: 1 2 3 4 5 6 7 ... 153

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1965428	chr9:115383253-115383254	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs573052434	chr9:115383328-115383329	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs786984	chr9:115383332-115383333	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs10568772	chr9:115383340-115383341	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs565176802	chr9:115383358-115383359	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs370886570	chr9:115383369-115383370	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs532416262	chr9:115383381-115383382	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
8	rs531093893	chr9:115383383-115383384	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
9	rs12346080	chr9:115383390-115383391	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
10	rs191606117	chr9:115383416-115383417	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
11	rs138536173	chr9:115383590-115383591	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
12	rs568850936	chr9:115383636-115383637	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
13	rs546733399	chr9:115383671-115383672	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
14	rs786985	chr9:115383694-115383695	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs374876107	chr9:115383703-115383704	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
16	rs532696761	chr9:115383764-115383765	Weak transcription Strong transcription Enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
17	rs551587340	chr9:115383795-115383796	Weak transcription Strong transcription Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs143872038	chr9:115383825-115383826	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs147240303	chr9:115383846-115383847	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs183816372	chr9:115383856-115383857	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs567111662	chr9:115383857-115383858	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs12351944	chr9:115383868-115383869	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs552595488	chr9:115383880-115383881	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs187964755	chr9:115383961-115383962	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs1290321	chr9:115383962-115383963	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs572593381	chr9:115383988-115383989	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs538379690	chr9:115384016-115384017	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs3033071	chr9:115384023-115384024	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs558703204	chr9:115384051-115384052	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs575814610	chr9:115384069-115384070	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs786986	chr9:115384241-115384242	Weak transcription Strong transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
32	rs561633190	chr9:115384248-115384249	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs149235392	chr9:115384249-115384250	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs192966106	chr9:115384257-115384258	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs540623326	chr9:115384263-115384264	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs149367233	chr9:115384383-115384384	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs573592265	chr9:115384413-115384414	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs368341389	chr9:115384426-115384427	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs532630657	chr9:115384464-115384465	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs552727534	chr9:115384476-115384477	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs564896280	chr9:115384490-115384491	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs80135802	chr9:115384517-115384518	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs550553563	chr9:115384633-115384634	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs74684382	chr9:115384669-115384670	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs536192692	chr9:115384677-115384678	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs546170709	chr9:115384692-115384693	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs566157138	chr9:115384706-115384707	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
48	rs144551707	chr9:115384758-115384759	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs558242603	chr9:115384769-115384770	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs575704925	chr9:115384774-115384775	Weak transcription Strong transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Medulloblastoma	21979893	CNVD
microdeletion syndrome	16199537	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Urothelial carcinoma	21177765	CNVD
Renal cell carcinoma	21668985	CNVD
Autism	22495311	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	16751803	CNVD
Myelofibrosis	22110671	CNVD
lymphocytic leukemia	21291569	CNVD
Leukemia	17361228	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Glioblastoma	16823260	CNVD
Non-small cell lung cancer	21044232	CNVD
Brain cancer	20823417	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Renal cell carcinoma	19461508	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Heart disease	21282601	CNVD
Lung cancer	18438408	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Gastric cancer	17908304	CNVD
small cell lung cancer	20016488	CNVD
Cardiac fibroma	18329553	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Testicular germ cell tumor	18059402	CNVD
Breast cancer	21364760	CNVD
Developmental delay	21147756	CNVD
Lung cancer	19147751	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16272173	CNVD
Breast cancer	22522925	CNVD
Melanoma	20877625	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:4846 , 50 per page) page: 1 2 3 4 5 6 7 ... 97

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115346400-115385000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:115368600-115391600	Weak transcription	Brain Hippocampus Middle	brain
3	chr9:115378000-115383400	Weak transcription	GM12878-XiMat	blood
4	chr9:115378400-115386600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:115379000-115391400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:115379000-115410200	Weak transcription	HSMMtube	muscle
7	chr9:115379400-115386400	Weak transcription	Brain Anterior Caudate	brain
8	chr9:115379800-115384000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:115379800-115386600	Weak transcription	Brain Substantia Nigra	brain
10	chr9:115380000-115383400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr9:115380000-115385800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:115380000-115392000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:115380600-115384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:115380800-115385400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr9:115380800-115386600	Weak transcription	Brain Germinal Matrix	brain
16	chr9:115380800-115387600	Weak transcription	Fetal Thymus	thymus
17	chr9:115381000-115383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:115381000-115383400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr9:115381000-115386800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:115381000-115387000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:115381000-115392600	Weak transcription	Left Ventricle	heart
22	chr9:115381000-115402800	Weak transcription	Primary T cells from cord blood	blood
23	chr9:115381200-115383400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr9:115381200-115383400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr9:115381200-115383400	Weak transcription	K562	blood
26	chr9:115381200-115383600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr9:115381200-115383600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:115381200-115384000	Weak transcription	NHDF-Ad	bronchial
29	chr9:115381200-115384200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:115381200-115386000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:115381200-115386600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:115381200-115386800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:115381200-115387000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr9:115381200-115387200	Weak transcription	Esophagus	oesophagus
35	chr9:115381200-115391800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr9:115381200-115392000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr9:115381200-115392200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr9:115381200-115392200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr9:115381200-115392200	Weak transcription	Fetal Stomach	stomach
40	chr9:115381200-115393400	Weak transcription	Primary B cells from cord blood	blood
41	chr9:115381200-115393400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr9:115381200-115393400	Weak transcription	Fetal Muscle Leg	muscle
43	chr9:115381200-115400600	Weak transcription	Fetal Intestine Small	intestine
44	chr9:115381200-115401600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr9:115381200-115401600	Weak transcription	Dnd41	blood
46	chr9:115382000-115383600	Enhancers	Fetal Lung	lung
47	chr9:115382600-115384400	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr9:115382600-115384600	Enhancers	Ovary	ovary
49	chr9:115382800-115383400	Enhancers	Fetal Kidney	kidney
50	chr9:115383000-115383600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links