Variant report

Variant	nsv1048350
Chromosome Location	chr11:5189296-5225842
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:140)
CpG islands
(count:123)
Chromatin interactive
region (count:45)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:140 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:5222439-5222656	K562	blood:	n/a	n/a
2	ARID3A	chr11:5218875-5219075	K562	blood:	n/a	n/a
3	ARID3A	chr11:5194443-5194536	K562	blood:	n/a	n/a
4	ARID3A	chr11:5220569-5220574	K562	blood:	n/a	n/a
5	ARID3A	chr11:5217315-5217701	K562	blood:	n/a	n/a
6	ARID3A	chr11:5193260-5193372	K562	blood:	n/a	n/a
7	ARID3A	chr11:5220105-5220182	K562	blood:	n/a	n/a
8	ATF1	chr11:5199045-5199305	K562	blood:	n/a	n/a
9	BACH1	chr11:5217475-5217660	K562	blood:	n/a	n/a
10	BHLHE40	chr11:5217386-5217656	K562	blood:	n/a	n/a
11	BHLHE40	chr11:5193299-5193453	K562	blood:	n/a	n/a
12	CCNT2	chr11:5206078-5206231	K562	blood:	n/a	n/a
13	CEBPB	chr11:5199691-5200054	IMR90	lung:	n/a	n/a
14	CEBPB	chr11:5189572-5189685	K562	blood:	n/a	chr11:5189660-5189671 chr11:5189660-5189673
15	CEBPB	chr11:5199668-5200048	K562	blood:	n/a	n/a
16	CEBPB	chr11:5218017-5218228	K562	blood:	n/a	chr11:5218173-5218184 chr11:5218171-5218184
17	CEBPB	chr11:5199688-5200003	A549	lung:	n/a	n/a
18	CEBPB	chr11:5199690-5200049	HepG2	liver:	n/a	n/a
19	CEBPB	chr11:5218052-5218310	H1-hESC	embryonic stem cell:	n/a	chr11:5218173-5218184 chr11:5218171-5218184
20	CEBPB	chr11:5217466-5217539	K562	blood:	n/a	n/a
21	CEBPB	chr11:5199688-5200067	K562	blood:	n/a	n/a
22	CEBPB	chr11:5218644-5219064	K562	blood:	n/a	n/a
23	CEBPB	chr11:5218668-5219156	IMR90	lung:	n/a	n/a
24	CHD2	chr11:5195669-5195693	GM12878	blood:	n/a	n/a
25	CTCF	chr11:5217340-5217580	K562	blood:	n/a	n/a
26	CTCF	chr11:5225640-5225790	AG09319	gingival:	n/a	n/a
27	CTCF	chr11:5218252-5218258	K562	blood:	n/a	n/a
28	CTCF	chr11:5219612-5219681	Lung_OC	lung:	n/a	n/a
29	CTCF	chr11:5218237-5218251	K562	blood:	n/a	n/a
30	CTCF	chr11:5225800-5226495	A549	lung:	n/a	chr11:5226195-5226216 chr11:5226194-5226210 chr11:5226193-5226211 chr11:5226196-5226205
31	CTCF	chr11:5217360-5217510	K562	blood:	n/a	n/a
32	CTCF	chr11:5225766-5226490	SK-N-SH	brain:	n/a	chr11:5226195-5226216 chr11:5226194-5226210 chr11:5226193-5226211 chr11:5226196-5226205
33	CTCF	chr11:5225780-5225930	K562	blood:	n/a	n/a
34	CTCF	chr11:5218067-5218317	K562	blood:	n/a	n/a
35	CTCF	chr11:5217480-5217630	HBMEC	blood vessel:	n/a	n/a
36	CTCF	chr11:5225819-5226511	HCT-116	colon:	n/a	chr11:5226195-5226216 chr11:5226194-5226210 chr11:5226193-5226211 chr11:5226196-5226205
37	CTCF	chr11:5217385-5217604	K562	blood:	n/a	n/a
38	CTCF	chr11:5225820-5225970	BJ	skin:	n/a	n/a
39	CTCF	chr11:5225122-5225168	GM20000	blood:	n/a	n/a
40	CTCF	chr11:5217424-5217547	K562	blood:	n/a	n/a
41	CUX1	chr11:5217323-5217584	K562	blood:	n/a	n/a
42	CUX1	chr11:5218171-5218307	K562	blood:	n/a	n/a
43	E2F4	chr11:5218232-5218424	MCF10A-Er-Src	breast:	n/a	n/a
44	E2F4	chr11:5195343-5195706	MCF10A-Er-Src	breast:	n/a	n/a
45	E2F4	chr11:5207722-5207994	MCF10A-Er-Src	breast:	n/a	n/a
46	E2F6	chr11:5217399-5217573	K562	blood:	n/a	n/a
47	ELF1	chr11:5199501-5199828	K562	blood:	n/a	chr11:5199662-5199675
48	EP300	chr11:5219581-5219817	K562	blood:	n/a	n/a
49	EP300	chr11:5218936-5219113	K562	blood:	n/a	n/a
50	EP300	chr11:5193277-5193345	K562	blood:	n/a	n/a

(count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:5221539-5221589	Caco-2	colon:	n/a
2	chr11:5221539-5221589	Caco-2	colon:	n/a
3	chr11:5221539-5221589	PANC-1	pancreas:	n/a
4	chr11:5221539-5221589	LNCaP	prostate:	n/a
5	chr11:5221539-5221589	SK-N-SH_RA	brain:	n/a
6	chr11:5223080-5223130	AG04449	skin:	fetal
7	chr11:5223080-5223130	ProgFib	skin:	n/a
8	chr11:5223080-5223130	Hela-S3	cervix:	n/a
9	chr11:5223080-5223130	CMK	blood:	n/a
10	chr11:5221539-5221589	GM06990	blood:	n/a
11	chr11:5221539-5221589	RPTEC	kidney:	n/a
12	chr11:5223080-5223130	AG09309	skin:	n/a
13	chr11:5223080-5223130	SKMC	muscle:	n/a
14	chr11:5223080-5223130	GM12891	blood:	n/a
15	chr11:5221539-5221589	HEEpiC	esophagus:	n/a
16	chr11:5223080-5223130	SK-N-MC	brain:	n/a
17	chr11:5221539-5221589	HIPEpiC	eye:	n/a
18	chr11:5223080-5223130	A549	lung:	n/a
19	chr11:5223080-5223130	PFSK-1	brain:	n/a
20	chr11:5223080-5223130	GM12878	blood:	n/a
21	chr11:5223080-5223130	NB4	blood:	n/a
22	chr11:5223080-5223130	HRE	kidney:	n/a
23	chr11:5221539-5221589	NB4	blood:	n/a
24	chr11:5223080-5223130	SAEC	small airway:	n/a
25	chr11:5223080-5223130	Jurkat	blood:	n/a
26	chr11:5223080-5223130	LNCaP	prostate:	n/a
27	chr11:5223080-5223130	HRPEpiC	eye:	n/a
28	chr11:5223080-5223130	PrEC	prostate:	n/a
29	chr11:5221539-5221589	SKMC	muscle:	n/a
30	chr11:5223080-5223130	HCT-116	colon:	n/a
31	chr11:5221539-5221589	U87	brain:	n/a
32	chr11:5223080-5223130	HPAEpiC	pulmonary alveolar:	n/a
33	chr11:5221539-5221589	AoSMC	blood vessel:	n/a
34	chr11:5221539-5221589	NHBE	bronchial:	n/a
35	chr11:5221539-5221589	HRCEpiC	kidney:	n/a
36	chr11:5221539-5221589	HRE	kidney:	n/a
37	chr11:5221539-5221589	HPAEpiC	pulmonary alveolar:	n/a
38	chr11:5221539-5221589	ovcar-3	ovarian:	n/a
39	chr11:5223080-5223130	MCF-7	breast:	n/a
40	chr11:5221539-5221589	ProgFib	skin:	n/a
41	chr11:5223080-5223130	HCF	heart:	n/a
42	chr11:5221539-5221589	Jurkat	blood:	n/a
43	chr11:5223080-5223130	ovcar-3	ovarian:	n/a
44	chr11:5223080-5223130	H1-hESC	embryonic stem cell:	embryo
45	chr11:5223080-5223130	HRCEpiC	kidney:	n/a
46	chr11:5223080-5223130	MCF10A-Er-Src	breast:	n/a
47	chr11:5223080-5223130	BJ	skin:	n/a
48	chr11:5221539-5221589	HEK293	kidney:	embryo
49	chr11:5221539-5221589	HL-60	blood:	n/a
50	chr11:5223080-5223130	T-47D	breast:	n/a

(count:45 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:5222789-5225325..11:5250847-5268367	K562	blood:
2	chr11:5174124..5177497-chr11:5196224..5198159,3	K562	blood:
3	11:5181580-5190487..11:5700314-5707362	GM12878	blood:
4	chr11:5191979..5193506-chr11:5217289..5219722,2	K562	blood:
5	chr11:5216338..5218129-chr11:5279337..5280949,2	K562	blood:
6	chr11:5217946..5220374-chr11:5295563..5297750,2	K562	blood:
7	chr11:5145799..5146631-chr11:5217510..5218294,2	K562	blood:
8	chr11:5218893..5221432-chr11:5224834..5227380,3	K562	blood:
9	11:5222789-5225325..11:5616559-5618985	H1-hESC	embryonic stem cell:	embryo
10	11:5222789-5225325..11:5533869-5541626	K562	blood:
11	11:5146608-5154908..11:5217159-5218976	K562	blood:
12	chr11:5218102..5224405-chr11:5224720..5231093,9	K562	blood:
13	chr11:5150178..5155699-chr11:5220911..5225581,8	K562	blood:
14	chr11:5208760..5213541-chr11:5217325..5221735,4	K562	blood:
15	chr11:5172907..5175854-chr11:5188403..5191895,3	K562	blood:
16	chr11:5216417..5219337-chr11:5231565..5234054,2	K562	blood:
17	chr11:5192167..5196032-chr11:5198178..5201494,6	K562	blood:
18	11:5217159-5218976..11:5321718-5325668	K562	blood:
19	chr11:5218102..5224405-chr11:5224720..5231093,9	K562	blood:
20	11:5222789-5225325..11:5714465-5718134	K562	blood:
21	11:5181580-5190487..11:5533869-5541626	K562	blood:
22	chr11:5208760..5213541-chr11:5217325..5221735,4	K562	blood:
23	chr11:5188285..5189927-chr11:5190428..5192790,2	K562	blood:
24	chr11:5220556..5223187-chr11:5263121..5265697,2	K562	blood:
25	11:5146608-5154908..11:5222789-5225325	K562	blood:
26	chr11:5150860..5154299-chr11:5221551..5224711,3	K562	blood:
27	chr11:5224202..5227710-chr11:5524990..5527435,3	K562	blood:
28	11:5217159-5218976..11:5700314-5707362	K562	blood:
29	chr11:5188106..5190567-chr11:5193129..5195928,3	K562	blood:
30	chr11:5152006..5154660-chr11:5213226..5215210,2	K562	blood:
31	chr11:5149697..5151826-chr11:5212442..5214718,2	K562	blood:
32	11:5222789-5225325..11:5700314-5707362	K562	blood:
33	11:5222789-5225325..11:5469844-5475173	K562	blood:
34	chr11:5176895..5179770-chr11:5188054..5190408,2	K562	blood:
35	11:5181580-5190487..11:5250847-5268367	Hela-S3	cervix:
36	11:5222789-5225325..11:5527719-5533869	K562	blood:
37	chr11:5216220..5220735-chr11:5221265..5224295,5	K562	blood:
38	chr11:5222818..5224901-chr11:5309713..5311258,2	K562	blood:
39	chr11:5188106..5190567-chr11:5193129..5195928,3	K562	blood:
40	11:5181580-5190487..11:5527719-5533869	GM12878	blood:
41	chr11:5191942..5195830-chr11:5198178..5202032,4	K562	blood:
42	11:5181580-5190487..11:5714465-5718134	K562	blood:
43	chr11:5151076..5153190-chr11:5193820..5196178,2	K562	blood:
44	chr11:5191942..5195830-chr11:5198178..5202032,4	K562	blood:
45	chr11:5192167..5196032-chr11:5198178..5201494,6	K562	blood:

No data

Variant related genes	Relation type
OR52Z1	TF binding region
OR51V1	TF binding region
ENSG00000224091	TF binding region
OR51A1P	TF binding region
OR52A1	TF binding region
OR52Z1	CpG island
OR51V1	CpG island
ENSG00000224091	CpG island
OR51A1P	CpG island
OR52A1	CpG island
ENSG00000187918	chromatin interactions
ENSG00000223609	chromatin interactions
ENSG00000175520	chromatin interactions
ENSG00000171944	chromatin interactions
ENSG00000121236	chromatin interactions
ENSG00000260629	chromatin interactions
ENSG00000176742	chromatin interactions
ENSG00000213931	chromatin interactions
ENSG00000258588	chromatin interactions
ENSG00000132256	chromatin interactions
ENSG00000229988	chromatin interactions
ENSG00000176748	chromatin interactions
ENSG00000175518	chromatin interactions
ENSG00000183251	chromatin interactions
ENSG00000196565	chromatin interactions
ENSG00000176752	chromatin interactions
ENSG00000132274	chromatin interactions
ENSG00000224091	chromatin interactions
ENSG00000167355	chromatin interactions
ENSG00000182070	chromatin interactions

Extended variants
information (count: 1439 )
Associated
traits (count: 61 )

Variant overlapped rSNPs/rCNVs (count:1439 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs138191905	chr11:5189367-5189368	Weak transcription Enhancers	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
2	rs115885209	chr11:5189369-5189370	Weak transcription Enhancers	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
3	rs57911787	chr11:5189398-5189399	Weak transcription Enhancers	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs144019642	chr11:5189415-5189416	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
5	rs555312849	chr11:5189416-5189417	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
6	rs201652530	chr11:5189457-5189458	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
7	rs386750119	chr11:5189458-5189459	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
8	rs60636854	chr11:5189460-5189461	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
9	rs573875160	chr11:5189554-5189555	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
10	rs556570694	chr11:5189558-5189559	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
11	rs56381892	chr11:5189604-5189605	Weak transcription	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs201058515	chr11:5189612-5189613	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
13	rs199828586	chr11:5189623-5189624	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
14	rs61491854	chr11:5189627-5189628	Weak transcription	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs57430332	chr11:5189630-5189631	Weak transcription	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
16	rs57138324	chr11:5189682-5189683	Weak transcription	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs60603509	chr11:5189687-5189688	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
18	rs540814628	chr11:5189688-5189689	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
19	rs559807891	chr11:5189731-5189732	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
20	rs374007829	chr11:5189735-5189736	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
21	rs7481293	chr11:5189743-5189744	Weak transcription	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs529524638	chr11:5189760-5189761	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
23	rs12279380	chr11:5189764-5189765	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
24	rs550896378	chr11:5189771-5189772	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
25	rs78546573	chr11:5189781-5189782	Weak transcription	Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
26	rs74051384	chr11:5189899-5189900	Weak transcription	Chromatin interactive region	9 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs551416138	chr11:5189930-5189931	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
28	rs61060114	chr11:5189995-5189996	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
29	rs10160444	chr11:5190030-5190031	Weak transcription	Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs555515814	chr11:5190043-5190044	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
31	rs139503878	chr11:5190058-5190059	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
32	rs183089376	chr11:5190098-5190099	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
33	rs538100478	chr11:5190099-5190100	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
34	rs376252258	chr11:5190104-5190105	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
35	rs556516409	chr11:5190107-5190108	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
36	rs577662624	chr11:5190133-5190134	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
37	rs545029189	chr11:5190153-5190154	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
38	rs187762943	chr11:5190158-5190159	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
39	rs572105964	chr11:5190166-5190167	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
40	rs74051385	chr11:5190172-5190173	Weak transcription	Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
41	rs79969741	chr11:5190204-5190205	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
42	rs10734487	chr11:5190281-5190282	Weak transcription	Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs192078471	chr11:5190305-5190306	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
44	rs116780407	chr11:5190368-5190369	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
45	rs551454338	chr11:5190373-5190374	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
46	rs533484129	chr11:5190385-5190386	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
47	rs551748159	chr11:5190387-5190388	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
48	rs566780238	chr11:5190458-5190459	Weak transcription	Chromatin interactive region	8 gene(s)	Overlapped CNVs	n/a
49	rs4910717	chr11:5190474-5190475	Weak transcription	Chromatin interactive region	8 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
50	rs4910718	chr11:5190489-5190490	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:61)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Breast cancer	19432969	CNVD
Alzheimer''s disease	17576883	CNVD
Long-qt syndrome	17576883	CNVD
Emphysema	19352772	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Chordoma	18071362	CNVD
Breast cancer	16608533	CNVD
Cancer	21183584	CNVD
Gastric adenocarcinoma	19115996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Barrett''s syndrome	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Myelofibrosis	22110671	CNVD
Glioma	17123091	CNVD
Lung cancer	16773561	CNVD
Neuroblastoma	21124317	CNVD
Lung adenocarcinoma	17086460	CNVD
Lung cancer	17086460	CNVD
Schizophrenia	21399695	CNVD
Gastric cancer	16891809	CNVD
Cancer	17160897	CNVD
Multiple myeloma	16616336	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5186600-5192200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:5187800-5189400	Enhancers	K562	blood
3	chr11:5189400-5191600	Weak transcription	K562	blood
4	chr11:5191600-5193200	Enhancers	K562	blood
5	chr11:5192200-5192400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:5193200-5193600	Flanking Active TSS	K562	blood
7	chr11:5193600-5194000	Enhancers	K562	blood
8	chr11:5194000-5199000	Weak transcription	K562	blood
9	chr11:5199000-5200000	Enhancers	K562	blood
10	chr11:5217000-5217200	Enhancers	K562	blood
11	chr11:5217200-5217800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:5217200-5217800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr11:5217200-5217800	Flanking Active TSS	K562	blood
14	chr11:5217400-5217600	Enhancers	NHLF	lung
15	chr11:5217400-5217800	Enhancers	H9 Cell Line	embryonic stem cell
16	chr11:5217600-5220200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:5217600-5226000	Weak transcription	NHLF	lung
18	chr11:5217800-5219200	Enhancers	K562	blood
19	chr11:5218200-5219400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:5218600-5219800	Enhancers	Osteobl	bone
21	chr11:5219200-5220400	Weak transcription	K562	blood
22	chr11:5219400-5222800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:5220200-5224200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:5220400-5223200	Enhancers	K562	blood
25	chr11:5221000-5221800	Enhancers	Brain Germinal Matrix	brain
26	chr11:5221600-5221800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:5221800-5222600	Weak transcription	Brain Germinal Matrix	brain
28	chr11:5222600-5222800	Enhancers	Brain Germinal Matrix	brain
29	chr11:5222600-5223000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:5222800-5223200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:5223000-5229600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:5223200-5224800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:5223200-5224800	Weak transcription	K562	blood
34	chr11:5224200-5226200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr11:5224800-5225000	Enhancers	K562	blood
36	chr11:5224800-5225200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:5225000-5225400	Weak transcription	K562	blood
38	chr11:5225200-5231600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:5225400-5226400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links