Variant report
Variant | nsv10489 |
---|---|
Chromosome Location | chr4:49161172-49162620 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs376388184 | chr4:49161180-49161181 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs10433734 | chr4:49161181-49161182 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs534914530 | chr4:49161191-49161192 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs5021108 | chr4:49161199-49161200 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs377007570 | chr4:49161211-49161212 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs5021107 | chr4:49161245-49161246 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs4695471 | chr4:49161252-49161253 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs553102854 | chr4:49161257-49161258 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs59753014 | chr4:49161258-49161259 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs59647382 | chr4:49161298-49161299 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs143165298 | chr4:49161300-49161301 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs111919293 | chr4:49161303-49161304 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs4346623 | chr4:49161308-49161309 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs368212775 | chr4:49161319-49161320 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs4346624 | chr4:49161321-49161322 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs147073386 | chr4:49161331-49161332 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs138687791 | chr4:49161333-49161334 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs139730362 | chr4:49161334-49161335 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs372071767 | chr4:49161341-49161342 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs57763198 | chr4:49161347-49161348 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs571503804 | chr4:49161353-49161354 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs538788965 | chr4:49161354-49161355 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs372549658 | chr4:49161359-49161360 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs199684993 | chr4:49161363-49161364 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs6828357 | chr4:49161364-49161365 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs9884273 | chr4:49161385-49161386 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs143389559 | chr4:49161402-49161403 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs76517706 | chr4:49161408-49161409 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs557017423 | chr4:49161411-49161412 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs79848551 | chr4:49161412-49161413 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs76329701 | chr4:49161413-49161414 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs60401063 | chr4:49161415-49161416 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs374071290 | chr4:49161418-49161419 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs75331757 | chr4:49161434-49161435 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs370854895 | chr4:49161450-49161451 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs75928580 | chr4:49161454-49161455 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs575575917 | chr4:49161455-49161456 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs542977459 | chr4:49161467-49161468 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs144026349 | chr4:49161468-49161469 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs554582004 | chr4:49161470-49161471 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs201558723 | chr4:49161499-49161500 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs199837099 | chr4:49161501-49161502 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs540432781 | chr4:49161514-49161515 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs4235162 | chr4:49161534-49161535 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs9884736 | chr4:49161540-49161541 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs4694929 | chr4:49161548-49161549 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs367586314 | chr4:49161559-49161560 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs6827351 | chr4:49161613-49161614 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs4395471 | chr4:49161614-49161615 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs4126656 | chr4:49161615-49161616 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Colorectal cancer | 19359472 | CNVD |
Neuroblastoma | 17533364 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Cancer | 21637783 | CNVD |
Melanoma | 21693616 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Cervical cancer | 21062161 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Autism | 22495311 | CNVD |
Wilms tumour | 21544195 | CNVD |
Breast cancer | 21858162 | CNVD |
Small bowel adenocarcinoma | 21586687 | CNVD |
Gastric cancer | 21586687 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
Melanoma | 22183965 | CNVD |
Cancer | 22183965 | CNVD |
Melanoma | 18172304 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Lung cancer | 18438408 | CNVD |
Renal cell carcinoma | 18194544 | CNVD |
Breast cancer | 17603634 | CNVD |
Glioblastoma multiforme | 21922591 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Parkinson disease | 21956041 | CNVD |
Mental retardation | 20522426 | CNVD |
delayed speech | 20522426 | CNVD |
growth disorder | 20522426 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Myxofibrosarcoma | 16751306 | CNVD |
Esophageal squamous carcinoma | 18350619 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Parkinson disease | 18923514 | CNVD |
Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
Cancer | 21183584 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Schizophrenia | 21399695 | CNVD |
Breast cancer | 16272173 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Breast cancer | 21509527 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:49158600-49163000 | Weak transcription | K562 | blood |
2 | chr4:49158600-49163400 | Weak transcription | A549 | lung |
3 | chr4:49158600-49163400 | Weak transcription | NH-A | brain |
4 | chr4:49162000-49162200 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |